Wall clock time and date at job start Mon Mar 30 2020 01:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45750 * 117.94560 * 2 1 4 4 C 1.52923 * 110.48591 * 160.95004 * 3 2 1 5 5 C 1.53339 * 108.68660 * 50.74518 * 4 3 2 6 6 C 1.53071 * 108.42145 * 292.47958 * 5 4 3 7 7 H 1.09002 * 109.33021 * 288.81754 * 6 5 4 8 8 N 1.46500 * 109.40040 * 169.03261 * 6 5 4 9 9 C 1.34774 * 119.99961 * 154.57027 * 8 6 5 10 10 O 1.21281 * 120.00138 * 359.97438 * 9 8 6 11 11 C 1.50701 * 119.99741 * 180.02562 * 9 8 6 12 12 S 1.81005 * 109.47173 * 179.97438 * 11 9 8 13 13 C 1.76189 * 100.00097 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00127 * 0.02562 * 13 12 11 15 15 C 1.38805 * 120.00013 * 180.02562 * 13 12 11 16 16 N 1.31633 * 120.00034 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48490 * 109.46901 * 150.00205 * 17 15 13 21 21 C 1.33358 * 117.94742 * 180.02562 * 2 1 3 22 22 O 1.21280 * 118.24675 * 2.20060 * 21 2 1 23 23 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46930 * 299.97052 * 1 2 3 25 25 H 1.08989 * 109.47391 * 59.97495 * 1 2 3 26 26 H 1.08996 * 109.30460 * 281.26324 * 3 2 1 27 27 H 1.08999 * 109.30044 * 40.84887 * 3 2 1 28 28 H 1.09001 * 109.60130 * 170.51214 * 4 3 2 29 29 H 1.09001 * 109.60365 * 290.99381 * 4 3 2 30 30 H 1.08994 * 109.67269 * 172.74812 * 5 4 3 31 31 H 1.08993 * 109.67506 * 52.21318 * 5 4 3 32 32 H 0.97002 * 119.99685 * 334.57529 * 8 6 5 33 33 H 1.09005 * 109.47318 * 59.99759 * 11 9 8 34 34 H 1.09002 * 109.47150 * 299.99724 * 11 9 8 35 35 H 0.97001 * 119.99662 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5950 1.1258 0.4676 5 6 4.2493 -0.0013 -0.3404 6 6 3.5838 -1.3240 0.0479 7 1 3.8883 -1.5983 1.0579 8 7 4.0010 -2.3716 -0.8874 9 6 3.9908 -3.6628 -0.5013 10 8 3.6368 -3.9575 0.6207 11 6 4.4205 -4.7403 -1.4632 12 16 4.2975 -6.3551 -0.6547 13 6 4.8424 -7.3967 -1.9671 14 1 5.1254 -6.9662 -2.9163 15 6 4.9081 -8.7707 -1.7810 16 7 5.3147 -9.5489 -2.7617 17 14 4.4194 -9.5153 -0.1390 18 1 5.6101 -9.5886 0.7453 19 1 3.3803 -8.6677 0.4992 20 1 3.8791 -10.8813 -0.3562 21 6 2.0900 -1.1781 -0.0005 22 8 1.4159 -2.1854 -0.0420 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5134 0.8903 25 1 -0.3633 0.5142 -0.8897 26 1 2.1394 1.7000 -1.0089 27 1 1.6294 1.9705 0.6729 28 1 4.1385 2.0563 0.3037 29 1 3.6107 0.8723 1.5276 30 1 5.3143 -0.0456 -0.1126 31 1 4.1087 0.1814 -1.4057 32 1 4.2846 -2.1359 -1.7846 33 1 5.4522 -4.5648 -1.7683 34 1 3.7741 -4.7228 -2.3407 35 1 5.3609 -10.5091 -2.6315 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331093185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:12 Heat of formation + Delta-G solvation = -98.250746 kcal Electronic energy + Delta-G solvation = -18727.445044 eV Core-core repulsion = 15657.518706 eV Total energy + Delta-G solvation = -3069.926338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.098 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.90211 -40.21553 -37.59416 -36.33958 -34.68877 -33.73133 -31.35647 -29.25726 -28.09036 -27.85975 -24.89731 -23.38188 -21.85199 -20.17171 -19.60435 -18.15402 -17.93729 -17.73682 -17.30912 -17.10238 -16.31367 -16.19428 -15.69142 -15.17065 -14.97941 -14.78905 -14.73404 -14.38204 -13.74500 -13.60502 -13.37048 -13.19604 -13.03165 -12.99060 -12.74715 -12.38482 -12.25362 -11.89331 -11.83264 -11.24391 -11.18256 -11.00344 -10.55274 -10.10100 -9.72864 -9.01650 -8.53252 -6.23989 0.94239 1.29219 1.32901 1.47746 1.53927 1.60531 2.03077 2.23443 2.30038 2.70707 2.84917 3.49324 3.59432 3.76609 3.86794 4.00886 4.20644 4.29571 4.41881 4.42382 4.48947 4.61314 4.67761 4.80479 4.93293 5.04645 5.06843 5.20592 5.34672 5.44841 5.69427 6.09417 6.34165 6.41543 6.92106 7.09462 7.20080 8.59290 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.040294 B = 0.003953 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.717662 B = 7081.950048 C = 7340.636485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.605 5.605 3 C 0.103 3.897 4 C -0.129 4.129 5 C -0.120 4.120 6 C 0.137 3.863 7 H 0.100 0.900 8 N -0.701 5.701 9 C 0.539 3.461 10 O -0.551 6.551 11 C -0.108 4.108 12 S -0.178 6.178 13 C -0.529 4.529 14 H 0.064 0.936 15 C 0.048 3.952 16 N -0.916 5.916 17 Si 0.913 3.087 18 H -0.259 1.259 19 H -0.242 1.242 20 H -0.257 1.257 21 C 0.487 3.513 22 O -0.588 6.588 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.128 0.872 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.420 0.580 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.375 29.847 4.141 30.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.338 5.338 3 C -0.018 4.018 4 C -0.166 4.166 5 C -0.157 4.157 6 C 0.028 3.972 7 H 0.117 0.883 8 N -0.356 5.356 9 C 0.325 3.675 10 O -0.428 6.428 11 C -0.259 4.259 12 S 0.048 5.952 13 C -0.677 4.677 14 H 0.082 0.918 15 C -0.158 4.158 16 N -0.554 5.554 17 Si 0.735 3.265 18 H -0.183 1.183 19 H -0.167 1.167 20 H -0.181 1.181 21 C 0.274 3.726 22 O -0.467 6.467 23 H 0.073 0.927 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.146 0.854 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.258 0.742 33 H 0.140 0.860 34 H 0.125 0.875 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.247 28.685 5.894 29.590 hybrid contribution 0.198 -0.705 -1.405 1.584 sum -4.048 27.980 4.489 28.626 Atomic orbital electron populations 1.21832 0.79430 1.03133 1.03244 1.47466 1.07979 1.06427 1.71924 1.21816 0.93595 0.82660 1.03712 1.21923 0.94234 1.00315 1.00176 1.22010 1.01605 0.89539 1.02594 1.20947 0.89347 0.90501 0.96357 0.88256 1.45487 1.68045 1.04273 1.17784 1.19995 0.76216 0.83888 0.87450 1.90683 1.47060 1.82417 1.22635 1.23236 1.06616 0.94646 1.01376 1.84787 1.88151 0.99832 1.22412 1.22457 1.50699 0.94670 0.99849 0.91824 1.25526 0.93461 0.96435 1.00327 1.70011 1.46115 1.05637 1.33629 0.85889 0.80872 0.79652 0.80108 1.18297 1.16666 1.18101 1.21166 0.92147 0.83293 0.76042 1.90764 1.66921 1.37945 1.51082 0.92694 0.90058 0.89973 0.89411 0.88231 0.85360 0.91099 0.87857 0.88705 0.74167 0.86035 0.87524 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 10.48 127.77 1.34 2.48 16 2 N -0.60 -11.05 3.21 -851.63 -2.73 -13.78 16 3 C 0.10 0.74 6.40 86.49 0.55 1.30 16 4 C -0.13 -0.69 6.02 30.68 0.18 -0.51 16 5 C -0.12 -1.15 5.51 30.73 0.17 -0.99 16 6 C 0.14 3.11 2.70 44.10 0.12 3.23 16 7 H 0.10 2.67 7.57 -2.39 -0.02 2.65 16 8 N -0.70 -18.52 4.96 -446.77 -2.22 -20.74 16 9 C 0.54 20.76 7.28 87.66 0.64 21.40 16 10 O -0.55 -26.42 15.10 -2.14 -0.03 -26.46 16 11 C -0.11 -4.41 6.16 71.24 0.44 -3.97 16 12 S -0.18 -9.60 18.55 -56.49 -1.05 -10.65 16 13 C -0.53 -31.98 10.04 67.96 0.68 -31.30 16 14 H 0.06 4.02 8.03 -2.91 -0.02 4.00 16 15 C 0.05 2.90 5.50 84.86 0.47 3.37 16 16 N -0.92 -56.99 13.97 21.65 0.30 -56.69 16 17 Si 0.91 46.69 27.74 68.60 1.90 48.60 16 18 H -0.26 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.24 -12.65 6.74 99.48 0.67 -11.98 16 20 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 21 C 0.49 13.51 7.20 87.71 0.63 14.14 16 22 O -0.59 -23.82 14.74 -2.14 -0.03 -23.85 16 23 H 0.05 1.40 6.59 -2.39 -0.02 1.38 16 24 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.10 0.34 8.11 -2.39 -0.02 0.32 16 28 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.07 0.52 8.12 -2.39 -0.02 0.51 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.65 8.10 -2.39 -0.02 0.63 16 32 H 0.42 7.81 8.59 -92.71 -0.80 7.02 16 33 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 34 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 35 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -88.61 306.90 1.63 -86.98 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.27 Total: 7.43 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.22 Total: 9.16 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -4.65 Total: -91.21 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.06 Total: -50.31 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.90 Total: 48.60 kcal Atomic # 16 Polarization: -9.60 SS G_CDS: -1.05 Total: -10.65 kcal Total: -88.61 1.63 -86.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331093185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.273 kcal (2) G-P(sol) polarization free energy of solvation -88.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds