Wall clock time and date at job start Mon Mar 30 2020 01:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.45378 * 2 1 4 4 C 1.53315 * 109.46294 * 240.02615 * 2 1 3 5 5 C 1.51187 * 108.62161 * 159.90292 * 4 2 1 6 6 O 1.21279 * 119.77158 * 251.28000 * 5 4 2 7 7 N 1.33636 * 120.46027 * 71.25264 * 5 4 2 8 8 C 1.46914 * 120.62379 * 0.28984 * 7 5 4 9 9 C 1.53215 * 108.82013 * 288.03791 * 8 7 5 10 10 N 1.46069 * 109.72314 * 81.60171 * 9 8 7 11 11 C 1.34780 * 118.73367 * 116.13365 * 10 9 8 12 12 O 1.21276 * 120.00272 * 185.85382 * 11 10 9 13 13 C 1.50701 * 119.99872 * 5.86002 * 11 10 9 14 14 S 1.80998 * 109.47012 * 179.97438 * 13 11 10 15 15 C 1.76208 * 99.99753 * 179.97438 * 14 13 11 16 16 H 1.07995 * 119.99766 * 0.02562 * 15 14 13 17 17 C 1.38805 * 119.99748 * 179.97438 * 15 14 13 18 18 N 1.31627 * 119.99671 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99805 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47514 * 89.99857 * 19 17 15 21 21 H 1.48508 * 109.46675 * 209.99341 * 19 17 15 22 22 H 1.48499 * 109.47552 * 329.99401 * 19 17 15 23 23 H 1.08994 * 109.47372 * 294.74980 * 1 2 3 24 24 H 1.09002 * 109.47365 * 54.74889 * 1 2 3 25 25 H 1.09002 * 109.46883 * 174.74390 * 1 2 3 26 26 H 1.09002 * 109.60880 * 279.64334 * 4 2 1 27 27 H 1.08995 * 109.61330 * 40.15668 * 4 2 1 28 28 H 0.97004 * 119.68098 * 180.30768 * 7 5 4 29 29 H 1.09009 * 109.57893 * 168.23811 * 8 7 5 30 30 H 1.08995 * 109.69285 * 47.90975 * 8 7 5 31 31 H 1.09000 * 109.43385 * 321.52335 * 9 8 7 32 32 H 1.09003 * 109.43259 * 201.67503 * 9 8 7 33 33 H 1.09004 * 109.47112 * 299.99783 * 13 11 10 34 34 H 1.09004 * 109.47404 * 59.99465 * 13 11 10 35 35 H 0.96996 * 119.99599 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0408 -0.7222 -1.2522 5 6 3.4703 -0.2992 -1.5041 6 8 3.7278 0.4236 -2.4433 7 7 4.4520 -0.7157 -0.6987 8 6 4.1621 -1.5961 0.4411 9 6 3.4374 -0.7852 1.5203 10 7 2.0170 -0.6885 1.1937 11 6 1.1209 -1.2565 2.0249 12 8 -0.0536 -1.2832 1.7238 13 6 1.5784 -1.8584 3.3286 14 16 0.1523 -2.5356 4.2138 15 6 0.9535 -3.1562 5.6553 16 1 2.0222 -3.0488 5.7675 17 6 0.2108 -3.7823 6.6468 18 7 0.8094 -4.2463 7.7233 19 14 -1.6378 -3.9675 6.4527 20 1 -1.9375 -5.2493 5.7654 21 1 -2.2790 -3.9624 7.7922 22 1 -2.1665 -2.8380 5.6465 23 1 -0.3634 0.4302 0.9332 24 1 -0.3634 0.5931 -0.8392 25 1 -0.3633 -1.0234 -0.0941 26 1 2.0005 -1.8001 -1.0949 27 1 1.4229 -0.4516 -2.1083 28 1 5.3645 -0.4337 -0.8682 29 1 5.0949 -1.9901 0.8448 30 1 3.5277 -2.4208 0.1161 31 1 3.8666 0.2154 1.5715 32 1 3.5548 -1.2790 2.4850 33 1 2.2948 -2.6554 3.1293 34 1 2.0518 -1.0884 3.9380 35 1 0.2905 -4.6842 8.4161 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371048852.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:00 Heat of formation + Delta-G solvation = -71.371925 kcal Electronic energy + Delta-G solvation = -19185.047205 eV Core-core repulsion = 16116.286421 eV Total energy + Delta-G solvation = -3068.760785 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.98982 -40.41464 -37.62385 -35.69588 -34.63863 -34.42440 -30.62889 -29.43595 -28.80920 -27.79232 -24.44955 -23.77060 -21.12638 -20.59319 -19.50272 -18.40574 -18.14349 -17.53564 -17.31921 -17.04185 -16.69041 -15.83392 -15.65310 -15.06015 -14.97872 -14.72993 -14.39417 -14.05568 -13.86924 -13.50731 -13.33480 -13.27922 -13.26477 -12.99892 -12.71576 -12.56294 -12.47800 -12.21591 -11.84309 -11.14086 -10.98175 -10.48724 -10.40249 -9.99199 -9.63739 -8.94567 -8.48661 -6.18048 1.01846 1.33400 1.47923 1.49431 1.54815 1.56078 2.01773 2.26995 2.29246 2.72106 2.90400 3.36023 3.56444 3.82551 3.90843 4.04485 4.12621 4.20777 4.23883 4.27890 4.47879 4.51597 4.66362 4.76191 4.83533 4.97532 5.10235 5.33203 5.62064 5.73922 5.84276 6.15147 6.15903 6.23497 6.97547 7.13279 7.16752 8.63525 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.037539 B = 0.004575 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.705028 B = 6119.391145 C = 6705.790672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.146 4.146 5 C 0.519 3.481 6 O -0.595 6.595 7 N -0.711 5.711 8 C 0.092 3.908 9 C 0.076 3.924 10 N -0.604 5.604 11 C 0.530 3.470 12 O -0.537 6.537 13 C -0.112 4.112 14 S -0.177 6.177 15 C -0.525 4.525 16 H 0.065 0.935 17 C 0.047 3.953 18 N -0.918 5.918 19 Si 0.911 3.089 20 H -0.263 1.263 21 H -0.264 1.264 22 H -0.236 1.236 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.410 0.590 29 H 0.139 0.861 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.618 6.380 -15.239 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.056 3.944 3 H 0.099 0.901 4 C -0.187 4.187 5 C 0.306 3.694 6 O -0.477 6.477 7 N -0.362 5.362 8 C -0.032 4.032 9 C -0.047 4.047 10 N -0.339 5.339 11 C 0.318 3.682 12 O -0.414 6.414 13 C -0.262 4.262 14 S 0.049 5.951 15 C -0.673 4.673 16 H 0.083 0.917 17 C -0.158 4.158 18 N -0.556 5.556 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.188 1.188 22 H -0.160 1.160 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.131 0.869 28 H 0.247 0.753 29 H 0.157 0.843 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.848 6.571 -15.955 18.219 hybrid contribution 1.159 -0.205 0.885 1.473 sum 7.007 6.365 -15.069 17.796 Atomic orbital electron populations 1.22158 0.92154 1.03106 1.00949 1.20960 0.96003 0.95160 0.82306 0.90094 1.22470 0.92530 1.03332 1.00370 1.20756 0.88837 0.78858 0.80951 1.90739 1.85093 1.39457 1.32370 1.45916 1.10727 1.50207 1.29399 1.22375 1.03646 0.92007 0.85202 1.22482 0.78628 1.03140 1.00461 1.47840 1.07322 1.55226 1.23512 1.20151 0.85892 0.77547 0.84645 1.90808 1.18958 1.57013 1.74610 1.23416 1.01989 1.04256 0.96563 1.84753 1.14089 1.75541 1.20686 1.22472 0.96794 1.43066 1.04941 0.91670 1.25514 1.03008 0.93536 0.93783 1.70012 1.38284 1.38293 1.09037 0.85910 0.80463 0.81051 0.79218 1.18780 1.18808 1.16005 0.93016 0.92338 0.91461 0.87866 0.86919 0.75266 0.84280 0.89907 0.89033 0.86614 0.86341 0.87159 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 7.44 71.98 0.54 -2.56 16 2 C 0.16 3.26 3.21 45.16 0.14 3.40 16 3 H 0.08 1.60 7.95 -2.39 -0.02 1.58 16 4 C -0.15 -2.65 4.99 30.11 0.15 -2.50 16 5 C 0.52 10.38 7.11 87.99 0.63 11.00 16 6 O -0.60 -17.05 17.91 -3.03 -0.05 -17.10 16 7 N -0.71 -9.14 5.30 -462.77 -2.45 -11.59 16 8 C 0.09 0.85 6.48 86.37 0.56 1.41 16 9 C 0.08 1.00 6.09 86.53 0.53 1.53 16 10 N -0.60 -12.61 2.77 -798.71 -2.21 -14.83 16 11 C 0.53 15.77 7.47 87.66 0.65 16.42 16 12 O -0.54 -19.67 10.92 -3.02 -0.03 -19.70 16 13 C -0.11 -3.66 4.44 71.24 0.32 -3.34 16 14 S -0.18 -8.33 18.55 -56.49 -1.05 -9.37 16 15 C -0.53 -28.93 10.04 67.96 0.68 -28.25 16 16 H 0.07 3.76 8.03 -2.91 -0.02 3.74 16 17 C 0.05 2.65 5.50 84.86 0.47 3.12 16 18 N -0.92 -54.26 13.97 21.65 0.30 -53.95 16 19 Si 0.91 43.52 27.74 68.60 1.90 45.43 16 20 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.24 -11.23 6.74 99.48 0.67 -10.56 16 23 H 0.05 1.52 6.67 -2.39 -0.02 1.51 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.90 6.54 -2.39 -0.02 1.88 16 26 H 0.10 1.75 7.08 -2.39 -0.02 1.73 16 27 H 0.11 2.00 7.98 -2.39 -0.02 1.98 16 28 H 0.41 4.18 8.91 -92.71 -0.83 3.35 16 29 H 0.14 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.08 0.90 7.04 -2.39 -0.02 0.88 16 31 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 32 H 0.12 1.43 5.56 -2.39 -0.01 1.42 16 33 H 0.12 3.38 7.55 -2.39 -0.02 3.36 16 34 H 0.11 3.36 7.90 -2.39 -0.02 3.34 16 35 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -73.87 294.80 1.32 -72.54 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.25 Total: 8.34 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 4.66 Total: 0.23 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -4.36 Total: -80.37 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.09 Total: -36.80 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.90 Total: 45.43 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.05 Total: -9.37 kcal Total: -73.87 1.32 -72.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371048852.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.172 kcal (2) G-P(sol) polarization free energy of solvation -73.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds