Wall clock time and date at job start Mon Mar 30 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00299 * 2 1 4 4 H 1.48497 * 109.47120 * 270.00507 * 3 2 1 5 5 H 1.48501 * 109.46852 * 30.00108 * 3 2 1 6 6 H 1.48493 * 109.47122 * 150.00148 * 3 2 1 7 7 C 1.37882 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99696 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00030 * 179.97438 * 7 2 1 10 10 H 1.09001 * 110.53843 * 57.39097 * 9 7 2 11 11 C 1.54886 * 110.48843 * 294.77742 * 9 7 2 12 12 C 1.54889 * 102.74917 * 203.37965 * 11 9 7 13 13 C 1.54261 * 104.19762 * 37.94220 * 12 11 9 14 14 H 1.08999 * 110.07584 * 217.08855 * 13 12 11 15 15 N 1.46503 * 110.03513 * 95.67477 * 13 12 11 16 16 C 1.34772 * 119.99593 * 87.83490 * 15 13 12 17 17 O 1.21585 * 120.00308 * 0.02562 * 16 15 13 18 18 N 1.34782 * 119.99435 * 180.02562 * 16 15 13 19 19 C 1.46495 * 119.99881 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47260 * 179.97438 * 19 18 16 21 21 C 1.31164 * 119.99998 * 124.99747 * 20 19 18 22 22 Cl 1.73598 * 120.00096 * 179.97438 * 21 20 19 23 23 C 1.53879 * 106.59710 * 336.39056 * 13 12 11 24 24 H 0.97005 * 119.99947 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.75449 * 321.69045 * 11 9 7 26 26 H 1.09001 * 110.76094 * 84.88233 * 11 9 7 27 27 H 1.09000 * 110.48813 * 279.26371 * 12 11 9 28 28 H 1.09003 * 110.48628 * 156.62419 * 12 11 9 29 29 H 0.96998 * 119.99759 * 267.83874 * 15 13 12 30 30 H 0.96992 * 120.00231 * 359.97438 * 18 16 15 31 31 H 1.08999 * 109.47519 * 59.99345 * 19 18 16 32 32 H 1.09006 * 109.47166 * 300.00083 * 19 18 16 33 33 H 1.07999 * 119.99988 * 304.99717 * 20 19 18 34 34 H 1.07995 * 119.99985 * 359.73016 * 21 20 19 35 35 H 1.09002 * 110.03261 * 119.28748 * 23 13 12 36 36 H 1.09002 * 110.03057 * 240.71338 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8942 -0.6443 0.8587 11 6 4.0531 -0.5858 -1.3185 12 6 5.4716 -1.1993 -1.4205 13 6 5.2977 -2.6425 -0.9042 14 1 6.1739 -2.9425 -0.3294 15 7 5.0992 -3.5581 -2.0305 16 6 6.1637 -4.1092 -2.6465 17 8 7.2887 -3.8470 -2.2671 18 7 5.9811 -4.9511 -3.6831 19 6 7.1382 -5.5506 -4.3523 20 6 6.6648 -6.4458 -5.4685 21 6 7.1083 -6.2623 -6.6891 22 17 6.5636 -7.2939 -7.9747 23 6 4.0513 -2.6392 -0.0017 24 1 -0.4850 0.8401 0.0004 25 1 3.4388 -0.8903 -2.1658 26 1 4.1032 0.5009 -1.2503 27 1 6.1710 -0.6503 -0.7899 28 1 5.8122 -1.2030 -2.4559 29 1 4.2017 -3.7675 -2.3330 30 1 5.0837 -5.1605 -3.9855 31 1 7.7097 -6.1379 -3.6336 32 1 7.7701 -4.7623 -4.7615 33 1 5.9604 -7.2383 -5.2632 34 1 7.8093 -5.4671 -6.8952 35 1 3.2988 -3.3188 -0.4018 36 1 4.3230 -2.9368 1.0111 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895132577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:11 Heat of formation + Delta-G solvation = -31.329825 kcal Electronic energy + Delta-G solvation = -18323.035250 eV Core-core repulsion = 15253.967115 eV Total energy + Delta-G solvation = -3069.068135 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.00756 -37.70947 -37.15571 -35.64263 -33.66360 -32.71307 -31.85636 -28.51586 -27.81086 -25.89998 -23.52095 -21.19732 -20.87785 -19.65674 -19.35798 -18.10634 -17.06254 -16.67906 -15.94137 -15.21242 -15.07551 -14.69723 -14.36573 -13.88981 -13.82837 -13.11993 -12.85824 -12.66340 -12.53110 -12.33467 -12.03088 -11.42529 -11.26058 -11.18783 -10.93614 -10.56768 -10.24344 -10.06587 -9.94669 -9.74944 -9.63195 -9.46147 -9.20720 -9.03071 -8.58311 -8.54067 -6.09331 -4.08237 1.29185 1.83473 2.93380 3.28413 3.33806 3.37986 3.39984 4.39744 4.40731 4.41290 4.62249 5.09139 5.18657 5.30738 5.37899 5.45264 5.64205 5.69760 5.82928 6.12217 6.15119 6.31112 6.35203 6.42913 6.53730 6.55268 6.71093 6.85555 6.95039 7.10811 7.15979 7.50517 7.75808 8.14963 8.49653 8.73182 8.93616 9.54020 11.03762 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028833 B = 0.003174 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.883204 B = 8818.235426 C = 9229.659088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.011 3.989 10 H 0.034 0.966 11 C -0.128 4.128 12 C -0.133 4.133 13 C 0.158 3.842 14 H 0.081 0.919 15 N -0.729 5.729 16 C 0.703 3.297 17 O -0.597 6.597 18 N -0.750 5.750 19 C 0.175 3.825 20 C -0.159 4.159 21 C -0.087 4.087 22 Cl -0.090 7.090 23 C -0.112 4.112 24 H 0.263 0.737 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.398 0.602 30 H 0.398 0.602 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.129 0.871 34 H 0.150 0.850 35 H 0.069 0.931 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.909 -12.035 -11.725 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.710 3.290 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.547 4.547 8 H 0.091 0.909 9 C -0.008 4.008 10 H 0.052 0.948 11 C -0.166 4.166 12 C -0.172 4.172 13 C 0.053 3.947 14 H 0.099 0.901 15 N -0.383 5.383 16 C 0.403 3.597 17 O -0.475 6.475 18 N -0.407 5.407 19 C 0.051 3.949 20 C -0.179 4.179 21 C -0.132 4.132 22 Cl -0.062 7.062 23 C -0.150 4.150 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.232 0.768 30 H 0.232 0.768 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.147 0.853 34 H 0.168 0.832 35 H 0.087 0.913 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.753 -11.753 -11.449 21.410 hybrid contribution -0.567 0.687 -0.514 1.028 sum 13.186 -11.067 -11.963 20.963 Atomic orbital electron populations 1.69903 1.06315 1.26931 1.50973 1.25003 0.94637 0.99076 0.94416 0.86891 0.80131 0.83669 0.78347 1.20444 1.22208 1.18860 1.21049 0.88604 0.94320 1.50769 0.90914 1.19986 0.96539 0.91198 0.93098 0.94790 1.22925 0.93946 0.98478 1.01211 1.22783 0.98526 0.95605 1.00260 1.21626 0.99349 0.88105 0.85614 0.90137 1.45466 1.07613 1.49359 1.35899 1.15980 0.85268 0.78855 0.79631 1.90901 1.22555 1.66362 1.67719 1.45053 1.09568 1.50598 1.35504 1.19989 0.87993 0.94954 0.91981 1.23268 1.00840 1.00400 0.93379 1.24529 1.02115 0.97419 0.89129 1.98387 1.88956 1.67456 1.51388 1.22432 0.94623 1.00340 0.97647 0.92709 0.91611 0.93635 0.91755 0.92534 0.76785 0.76805 0.90046 0.90948 0.85308 0.83216 0.91277 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 2 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 3 Si 0.88 21.45 24.65 -169.99 -4.19 17.26 16 4 H -0.28 -6.64 7.10 56.52 0.40 -6.24 16 5 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.16 6.47 56.52 0.37 -5.79 16 7 C -0.51 -13.64 9.04 -34.44 -0.31 -13.95 16 8 H 0.07 2.09 7.79 -52.48 -0.41 1.68 16 9 C 0.01 0.24 2.28 -90.12 -0.21 0.04 16 10 H 0.03 0.78 7.06 -51.93 -0.37 0.42 16 11 C -0.13 -2.62 5.31 -24.74 -0.13 -2.75 16 12 C -0.13 -2.35 6.54 -25.07 -0.16 -2.51 16 13 C 0.16 2.64 3.25 -66.81 -0.22 2.42 16 14 H 0.08 1.38 7.56 -51.93 -0.39 0.99 16 15 N -0.73 -10.55 5.03 -57.58 -0.29 -10.84 16 16 C 0.70 10.30 8.56 -86.92 -0.74 9.56 16 17 O -0.60 -10.98 16.00 5.29 0.08 -10.89 16 18 N -0.75 -7.82 5.55 -66.42 -0.37 -8.19 16 19 C 0.18 1.54 6.11 -5.20 -0.03 1.51 16 20 C -0.16 -1.06 9.36 -36.07 -0.34 -1.40 16 21 C -0.09 -0.57 10.43 28.97 0.30 -0.27 16 22 Cl -0.09 -0.68 29.10 -51.86 -1.51 -2.19 16 23 C -0.11 -2.06 6.13 -25.61 -0.16 -2.22 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 26 H 0.05 0.97 5.27 -51.93 -0.27 0.69 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 29 H 0.40 5.06 8.33 -40.82 -0.34 4.72 16 30 H 0.40 3.23 8.48 -40.82 -0.35 2.88 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.67 7.80 -51.93 -0.40 0.26 16 33 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.15 0.80 7.84 -52.49 -0.41 0.38 16 35 H 0.07 1.26 7.13 -51.93 -0.37 0.89 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -31.61 311.58 -7.91 -39.52 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.01 Total: 4.64 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.09 Total: -7.71 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.11 Total: -45.32 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.19 Total: 17.26 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.51 Total: -2.19 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.61 -7.91 -39.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895132577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.187 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds