Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00299 * 2 1 4 4 H 1.48497 * 109.47120 * 270.00507 * 3 2 1 5 5 H 1.48501 * 109.46852 * 30.00108 * 3 2 1 6 6 H 1.48493 * 109.47122 * 150.00148 * 3 2 1 7 7 C 1.37882 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99696 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00030 * 179.97438 * 7 2 1 10 10 H 1.09001 * 110.53843 * 57.39097 * 9 7 2 11 11 C 1.54886 * 110.48843 * 294.77742 * 9 7 2 12 12 C 1.54889 * 102.74917 * 203.37965 * 11 9 7 13 13 C 1.54261 * 104.19762 * 37.94220 * 12 11 9 14 14 H 1.08999 * 110.07584 * 217.08855 * 13 12 11 15 15 N 1.46503 * 110.03513 * 95.67477 * 13 12 11 16 16 C 1.34772 * 119.99593 * 87.83490 * 15 13 12 17 17 O 1.21585 * 120.00308 * 0.02562 * 16 15 13 18 18 N 1.34782 * 119.99435 * 180.02562 * 16 15 13 19 19 C 1.46495 * 119.99881 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47260 * 179.97438 * 19 18 16 21 21 C 1.31164 * 119.99998 * 124.99747 * 20 19 18 22 22 Cl 1.73598 * 120.00096 * 179.97438 * 21 20 19 23 23 C 1.53879 * 106.59710 * 336.39056 * 13 12 11 24 24 H 0.97005 * 119.99947 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.75449 * 321.69045 * 11 9 7 26 26 H 1.09001 * 110.76094 * 84.88233 * 11 9 7 27 27 H 1.09000 * 110.48813 * 279.26371 * 12 11 9 28 28 H 1.09003 * 110.48628 * 156.62419 * 12 11 9 29 29 H 0.96998 * 119.99759 * 267.83874 * 15 13 12 30 30 H 0.96992 * 120.00231 * 359.97438 * 18 16 15 31 31 H 1.08999 * 109.47519 * 59.99345 * 19 18 16 32 32 H 1.09006 * 109.47166 * 300.00083 * 19 18 16 33 33 H 1.07999 * 119.99988 * 304.99717 * 20 19 18 34 34 H 1.07995 * 119.99985 * 359.73016 * 21 20 19 35 35 H 1.09002 * 110.03261 * 119.28748 * 23 13 12 36 36 H 1.09002 * 110.03057 * 240.71338 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8942 -0.6443 0.8587 11 6 4.0531 -0.5858 -1.3185 12 6 5.4716 -1.1993 -1.4205 13 6 5.2977 -2.6425 -0.9042 14 1 6.1739 -2.9425 -0.3294 15 7 5.0992 -3.5581 -2.0305 16 6 6.1637 -4.1092 -2.6465 17 8 7.2887 -3.8470 -2.2671 18 7 5.9811 -4.9511 -3.6831 19 6 7.1382 -5.5506 -4.3523 20 6 6.6648 -6.4458 -5.4685 21 6 7.1083 -6.2623 -6.6891 22 17 6.5636 -7.2939 -7.9747 23 6 4.0513 -2.6392 -0.0017 24 1 -0.4850 0.8401 0.0004 25 1 3.4388 -0.8903 -2.1658 26 1 4.1032 0.5009 -1.2503 27 1 6.1710 -0.6503 -0.7899 28 1 5.8122 -1.2030 -2.4559 29 1 4.2017 -3.7675 -2.3330 30 1 5.0837 -5.1605 -3.9855 31 1 7.7097 -6.1379 -3.6336 32 1 7.7701 -4.7623 -4.7615 33 1 5.9604 -7.2383 -5.2632 34 1 7.8093 -5.4671 -6.8952 35 1 3.2988 -3.3188 -0.4018 36 1 4.3230 -2.9368 1.0111 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895132577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = -53.237465 kcal Electronic energy + Delta-G solvation = -18323.985236 eV Core-core repulsion = 15253.967115 eV Total energy + Delta-G solvation = -3070.018122 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17681 -39.07465 -37.81198 -36.50541 -35.18664 -34.11400 -33.15282 -30.18975 -29.23777 -26.83594 -25.31793 -22.36283 -21.56126 -20.99025 -20.96426 -19.21417 -18.91553 -17.59130 -17.06584 -16.75200 -16.11227 -16.10860 -15.48234 -15.22517 -14.79376 -14.76156 -14.16381 -14.04044 -13.85835 -13.30027 -13.09981 -12.86782 -12.62580 -12.53486 -12.29454 -11.83173 -11.80982 -11.59974 -11.49610 -11.33099 -11.24928 -10.98545 -10.66144 -10.41577 -10.12988 -9.67758 -8.25576 -6.27504 0.72195 1.27649 1.35480 1.39344 1.48922 1.94845 2.19333 2.37378 3.10416 3.41465 3.86511 3.89616 3.92581 4.01832 4.18227 4.44490 4.63433 4.66588 4.70015 4.78665 4.95570 4.99965 5.03002 5.14100 5.15898 5.24694 5.28222 5.48936 5.49891 5.67999 5.69687 5.83236 6.06286 6.36141 6.79389 7.12495 7.38025 7.62026 8.90851 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028833 B = 0.003174 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.883204 B = 8818.235426 C = 9229.659088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.012 3.988 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.299 1.299 6 H -0.245 1.245 7 C -0.506 4.506 8 H 0.039 0.961 9 C 0.004 3.996 10 H 0.031 0.969 11 C -0.124 4.124 12 C -0.123 4.123 13 C 0.168 3.832 14 H 0.082 0.918 15 N -0.726 5.726 16 C 0.702 3.298 17 O -0.634 6.634 18 N -0.735 5.735 19 C 0.176 3.824 20 C -0.154 4.154 21 C -0.083 4.083 22 Cl -0.098 7.098 23 C -0.104 4.104 24 H 0.263 0.737 25 H 0.056 0.944 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.406 0.594 30 H 0.411 0.589 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.066 0.934 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.703 -12.222 -12.560 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.184 4.184 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.227 1.227 6 H -0.169 1.169 7 C -0.544 4.544 8 H 0.057 0.943 9 C -0.015 4.015 10 H 0.049 0.951 11 C -0.162 4.162 12 C -0.162 4.162 13 C 0.063 3.937 14 H 0.100 0.900 15 N -0.381 5.381 16 C 0.401 3.599 17 O -0.515 6.515 18 N -0.392 5.392 19 C 0.052 3.948 20 C -0.174 4.174 21 C -0.128 4.128 22 Cl -0.069 7.069 23 C -0.142 4.142 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.242 0.758 30 H 0.247 0.753 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.181 0.819 35 H 0.085 0.915 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.543 -11.982 -12.320 23.172 hybrid contribution -1.162 0.640 -0.270 1.353 sum 14.381 -11.343 -12.590 22.226 Atomic orbital electron populations 1.70046 1.08144 1.27783 1.53327 1.25811 0.95275 1.02782 0.94555 0.85962 0.79472 0.79260 0.78914 1.19430 1.22667 1.16856 1.21368 0.91162 0.92845 1.49018 0.94278 1.19972 0.93485 0.94032 0.93973 0.95074 1.22780 0.95619 0.98178 0.99594 1.22714 0.96653 0.95855 1.00977 1.21358 0.98230 0.88173 0.85980 0.89986 1.45300 1.08215 1.49092 1.35484 1.16082 0.84488 0.79126 0.80155 1.90878 1.23903 1.67763 1.68998 1.44961 1.10933 1.49195 1.34120 1.20031 0.87377 0.95056 0.92322 1.23093 1.01259 1.00312 0.92702 1.24693 1.02008 0.97319 0.88811 1.98392 1.89060 1.67787 1.51691 1.22300 0.95222 0.97761 0.98963 0.92779 0.92480 0.94091 0.90712 0.91926 0.75758 0.75273 0.90392 0.91165 0.84473 0.81923 0.91545 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.36 13.96 21.45 0.30 -58.07 16 2 C 0.01 0.70 5.46 84.66 0.46 1.17 16 3 Si 0.94 43.81 24.65 68.60 1.69 45.50 16 4 H -0.27 -12.07 7.10 99.48 0.71 -11.36 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.24 -10.59 6.47 99.48 0.64 -9.95 16 7 C -0.51 -27.31 9.04 25.60 0.23 -27.08 16 8 H 0.04 2.31 7.79 -2.91 -0.02 2.29 16 9 C 0.00 0.19 2.28 -10.47 -0.02 0.17 16 10 H 0.03 1.37 7.06 -2.39 -0.02 1.36 16 11 C -0.12 -4.85 5.31 31.88 0.17 -4.68 16 12 C -0.12 -4.03 6.54 31.67 0.21 -3.82 16 13 C 0.17 5.25 3.25 45.71 0.15 5.40 16 14 H 0.08 2.62 7.56 -2.39 -0.02 2.60 16 15 N -0.73 -19.52 5.03 -454.35 -2.29 -21.81 16 16 C 0.70 19.14 8.56 179.05 1.53 20.67 16 17 O -0.63 -22.19 16.00 -3.98 -0.06 -22.26 16 18 N -0.74 -13.71 5.55 -482.30 -2.68 -16.39 16 19 C 0.18 2.73 6.11 85.63 0.52 3.26 16 20 C -0.15 -1.71 9.36 25.48 0.24 -1.48 16 21 C -0.08 -0.92 10.43 67.62 0.71 -0.21 16 22 Cl -0.10 -1.31 29.10 -2.72 -0.08 -1.39 16 23 C -0.10 -3.67 6.13 31.32 0.19 -3.47 16 24 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 25 H 0.06 2.31 8.05 -2.39 -0.02 2.29 16 26 H 0.04 1.63 5.27 -2.39 -0.01 1.62 16 27 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 29 H 0.41 9.54 8.33 -92.71 -0.77 8.77 16 30 H 0.41 5.64 8.48 -92.71 -0.79 4.85 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.16 7.80 -2.38 -0.02 1.14 16 33 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 34 H 0.16 1.35 7.84 -2.91 -0.02 1.33 16 35 H 0.07 2.36 7.13 -2.39 -0.02 2.34 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -67.70 311.58 0.75 -66.95 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -0.52 Total: 17.54 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 4.39 Total: -10.08 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -4.67 Total: -96.26 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.06 Total: -22.26 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.69 Total: 45.50 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -67.70 0.75 -66.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895132577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.717 kcal (2) G-P(sol) polarization free energy of solvation -67.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds