Wall clock time and date at job start Mon Mar 30 2020 01:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 110.99729 * 2 1 4 4 C 1.53006 * 109.46756 * 164.30717 * 3 2 1 5 5 H 1.09002 * 109.46960 * 57.19238 * 4 3 2 6 6 C 1.47192 * 109.47112 * 297.18764 * 4 3 2 7 7 N 3.63291 * 128.28537 * 81.29593 * 2 1 3 8 8 C 1.52999 * 109.46841 * 177.18783 * 4 3 2 9 9 C 1.50702 * 109.47015 * 185.00206 * 8 4 3 10 10 H 1.07996 * 120.00259 * 359.97438 * 9 8 4 11 11 C 1.37877 * 120.00014 * 179.97438 * 9 8 4 12 12 N 1.31514 * 120.00018 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00189 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46842 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46995 * 119.99713 * 13 11 9 16 16 H 1.48494 * 109.47259 * 240.00422 * 13 11 9 17 17 C 1.46902 * 110.99830 * 236.04308 * 2 1 3 18 18 C 1.53047 * 113.15088 * 39.33256 * 17 2 1 19 19 S 1.81426 * 89.88741 * 211.84862 * 18 17 2 20 20 O 1.42103 * 112.75142 * 280.47166 * 19 18 17 21 21 O 1.42099 * 112.75325 * 136.72866 * 19 18 17 22 22 C 1.53033 * 113.15420 * 298.95504 * 17 2 1 23 23 H 1.09002 * 109.47367 * 54.22010 * 1 2 3 24 24 H 1.08998 * 109.47162 * 174.22200 * 1 2 3 25 25 H 1.09000 * 109.47551 * 294.22001 * 1 2 3 26 26 H 1.08997 * 109.47585 * 44.31253 * 3 2 1 27 27 H 1.09000 * 109.47381 * 284.30542 * 3 2 1 28 28 H 1.09011 * 109.47321 * 304.99856 * 8 4 3 29 29 H 1.08997 * 109.47428 * 65.00310 * 8 4 3 30 30 H 0.97004 * 119.99660 * 180.02562 * 12 11 9 31 31 H 1.09007 * 112.49385 * 169.16266 * 17 2 1 32 32 H 1.08994 * 113.14704 * 327.10586 * 18 17 2 33 33 H 1.09000 * 113.15087 * 96.58748 * 18 17 2 34 34 H 1.08997 * 113.15109 * 263.40168 * 22 17 2 35 35 H 1.08998 * 113.14944 * 32.88886 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4747 1.3498 0.3902 5 1 4.0227 0.7069 -0.2985 6 6 3.6130 0.8315 1.7609 7 7 3.7199 0.4315 2.8188 8 6 4.0407 2.7696 0.3222 9 6 5.5239 2.7322 0.5864 10 1 6.0138 1.7902 0.7835 11 6 6.2556 3.9008 0.5765 12 7 5.6591 5.0482 0.3369 13 14 8.0940 3.8546 0.9046 14 1 8.5189 2.4520 1.1447 15 1 8.8206 4.3970 -0.2715 16 1 8.4042 4.6778 2.1010 17 6 1.9954 -0.7661 -1.1376 18 6 1.1948 -0.5579 -2.4252 19 16 1.5755 -2.2577 -2.9325 20 8 2.8801 -2.3886 -3.4804 21 8 0.4499 -2.9345 -3.4749 22 6 1.5751 -2.2374 -1.1183 23 1 -0.3634 0.6008 -0.8337 24 1 -0.3633 -1.0224 -0.1035 25 1 -0.3634 0.4216 0.9372 26 1 1.4391 1.9742 0.7179 27 1 1.8885 1.8017 -0.9958 28 1 3.8586 3.1865 -0.6684 29 1 3.5535 3.3914 1.0732 30 1 6.1740 5.8702 0.3296 31 1 3.0683 -0.6285 -1.2723 32 1 0.1325 -0.3916 -2.2471 33 1 1.6303 0.1936 -3.0838 34 1 2.3290 -2.8928 -0.6824 35 1 0.5860 -2.3949 -0.6883 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931245723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:49 Heat of formation + Delta-G solvation = -41.442853 kcal Electronic energy + Delta-G solvation = -18946.931710 eV Core-core repulsion = 15879.468748 eV Total energy + Delta-G solvation = -3067.462963 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21300 -38.28671 -37.82647 -37.02688 -35.64789 -34.56640 -32.87318 -29.02365 -27.52454 -26.69079 -24.67395 -23.53079 -21.18970 -19.63130 -18.64371 -18.33556 -17.57438 -17.41681 -17.08379 -16.70963 -16.21032 -15.61534 -15.55889 -14.84217 -14.62808 -14.31434 -14.20381 -13.85829 -13.72486 -13.30193 -13.22895 -13.22335 -13.01849 -12.77478 -12.68048 -12.56795 -12.43094 -12.34019 -12.27972 -11.72730 -11.67798 -11.34465 -11.16260 -11.08840 -10.54543 -9.26546 -8.19149 -6.26588 -0.73418 1.15970 1.39345 1.43051 1.52819 2.09027 2.16275 2.42020 2.81383 2.82017 3.17025 3.21186 3.36885 3.49527 3.81406 4.00402 4.12340 4.27229 4.39430 4.55413 4.70140 4.71389 4.77160 4.79486 4.94237 5.00919 5.04489 5.22205 5.48566 5.63040 5.80242 6.01994 6.07188 6.22915 6.84922 6.95733 7.42240 8.91809 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023821 B = 0.004575 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.173994 B = 6118.117818 C = 6580.185152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.530 5.530 3 C 0.067 3.933 4 C 0.016 3.984 5 H 0.117 0.883 6 C 0.267 3.733 7 N -0.515 5.515 8 C 0.037 3.963 9 C -0.538 4.538 10 H 0.053 0.947 11 C 0.013 3.987 12 N -0.923 5.923 13 Si 0.945 3.055 14 H -0.270 1.270 15 H -0.273 1.273 16 H -0.286 1.286 17 C 0.087 3.913 18 C -0.630 4.630 19 S 2.440 3.560 20 O -0.950 6.950 21 O -0.959 6.959 22 C -0.588 4.588 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.002 0.998 30 H 0.263 0.737 31 H 0.126 0.874 32 H 0.167 0.833 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.844 -11.538 -8.050 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.253 5.253 3 C -0.061 4.061 4 C -0.005 4.005 5 H 0.135 0.865 6 C -0.049 4.049 7 N -0.193 5.193 8 C -0.002 4.002 9 C -0.576 4.576 10 H 0.071 0.929 11 C -0.186 4.186 12 N -0.563 5.563 13 Si 0.771 3.229 14 H -0.195 1.195 15 H -0.199 1.199 16 H -0.212 1.212 17 C -0.025 4.025 18 C -0.762 4.762 19 S 2.624 3.376 20 O -0.947 6.947 21 O -0.956 6.956 22 C -0.718 4.718 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.021 0.979 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.184 0.816 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.353 -12.932 -7.009 19.208 hybrid contribution 0.820 1.610 0.276 1.828 sum -11.532 -11.321 -6.733 17.507 Atomic orbital electron populations 1.22659 0.85505 1.03528 1.02170 1.61859 1.09568 1.13473 1.40409 1.22150 0.92111 0.89258 1.02604 1.19265 0.98049 0.98811 0.84413 0.86516 1.29336 0.90133 0.90539 0.94937 1.80987 1.11728 1.12651 1.13908 1.19006 0.94133 0.89267 0.97800 1.21589 0.94816 0.93160 1.48011 0.92881 1.25661 1.02358 0.95415 0.95119 1.70027 1.37316 0.98486 1.50439 0.85695 0.81191 0.78153 0.77845 1.19461 1.19874 1.21193 1.22266 1.00347 0.92083 0.87764 1.31653 1.11932 1.25090 1.07489 1.07214 0.73397 0.79060 0.77952 1.93687 1.38703 1.85391 1.76928 1.93595 1.51902 1.72143 1.77915 1.31148 1.12330 1.02491 1.25795 0.92738 0.89242 0.91352 0.89994 0.90065 0.94370 0.97935 0.92751 0.85650 0.81572 0.83851 0.84648 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.26 127.69 1.05 1.18 16 2 N -0.53 -10.85 4.46 -936.93 -4.18 -15.02 16 3 C 0.07 1.66 4.33 86.31 0.37 2.03 16 4 C 0.02 0.55 2.22 -12.60 -0.03 0.52 16 5 H 0.12 3.54 6.55 -2.39 -0.02 3.53 16 6 C 0.27 10.56 13.61 89.44 1.22 11.78 16 7 N -0.52 -22.59 18.54 20.00 0.37 -22.22 16 8 C 0.04 1.62 4.42 29.85 0.13 1.75 16 9 C -0.54 -27.84 8.60 25.60 0.22 -27.62 16 10 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 11 C 0.01 0.72 5.46 84.65 0.46 1.19 16 12 N -0.92 -52.00 13.29 21.45 0.28 -51.71 16 13 Si 0.94 42.99 29.54 68.60 2.03 45.02 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 17 C 0.09 1.45 3.33 44.94 0.15 1.60 16 18 C -0.63 -7.03 7.03 72.00 0.51 -6.52 16 19 S 2.44 33.58 7.55 -56.49 -0.43 33.15 16 20 O -0.95 -20.86 18.18 -127.88 -2.32 -23.18 16 21 O -0.96 -18.86 18.18 -127.88 -2.32 -21.19 16 22 C -0.59 -7.28 7.49 71.99 0.54 -6.74 16 23 H 0.05 0.62 6.70 -2.39 -0.02 0.60 16 24 H 0.09 0.96 6.00 -2.39 -0.01 0.95 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 2.07 8.00 -2.39 -0.02 2.05 16 27 H 0.08 1.68 7.94 -2.39 -0.02 1.66 16 28 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.13 2.23 6.50 -2.38 -0.02 2.22 16 32 H 0.17 1.27 5.81 -2.39 -0.01 1.26 16 33 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.16 1.48 6.16 -2.39 -0.01 1.46 16 Total: -1.00 -74.62 306.07 -0.84 -75.46 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: 1.10 Total: 0.52 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.63 Total: -20.82 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -3.52 Total: -88.96 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -4.65 Total: -44.37 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 33.58 SS G_CDS: -0.43 Total: 33.15 kcal Total: -74.62 -0.84 -75.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931245723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.016 kcal (2) G-P(sol) polarization free energy of solvation -74.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds