Wall clock time and date at job start Mon Mar 30 2020 01:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35870 * 117.00297 * 2 1 4 4 C 1.38838 * 119.93570 * 180.02562 * 3 2 1 5 5 C 1.37912 * 120.06596 * 180.02562 * 4 3 2 6 6 C 1.39369 * 119.93332 * 359.96834 * 5 4 3 7 7 C 1.48373 * 120.06522 * 179.97438 * 6 5 4 8 8 C 1.39834 * 119.96214 * 0.02562 * 7 6 5 9 9 C 1.38235 * 120.41769 * 180.02562 * 8 7 6 10 10 C 1.38070 * 120.34921 * 0.23308 * 9 8 7 11 11 F 1.35095 * 120.04242 * 179.72926 * 10 9 8 12 12 C 1.41047 * 119.91566 * 359.49302 * 10 9 8 13 13 C 1.41317 * 120.20256 * 180.25568 * 12 10 9 14 14 H 1.07997 * 120.00216 * 329.88631 * 13 12 10 15 15 C 1.39918 * 120.00147 * 149.89472 * 13 12 10 16 16 N 1.30849 * 120.00090 * 162.19871 * 15 13 12 17 17 Si 1.86793 * 119.99654 * 342.19654 * 15 13 12 18 18 H 1.48501 * 109.47056 * 95.43385 * 17 15 13 19 19 H 1.48506 * 109.47317 * 215.43301 * 17 15 13 20 20 H 1.48504 * 109.47435 * 335.43338 * 17 15 13 21 21 C 1.38676 * 119.96553 * 179.97438 * 7 6 5 22 22 C 1.39378 * 119.87529 * 0.25740 * 6 5 4 23 23 C 1.37914 * 119.92809 * 359.51462 * 22 6 5 24 24 H 1.08995 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46607 * 299.99773 * 1 2 3 26 26 H 1.09004 * 109.47263 * 59.99393 * 1 2 3 27 27 H 1.08001 * 119.96670 * 359.97166 * 4 3 2 28 28 H 1.08000 * 120.03032 * 179.97438 * 5 4 3 29 29 H 1.07996 * 119.79364 * 359.97432 * 8 7 6 30 30 H 1.07993 * 119.82682 * 179.97438 * 9 8 7 31 31 H 0.96998 * 119.99885 * 179.97438 * 16 15 13 32 32 H 1.08006 * 120.17797 * 359.97438 * 21 7 6 33 33 H 1.07998 * 120.04298 * 179.72268 * 22 6 5 34 34 H 1.08000 * 119.96791 * 180.20741 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 3.4324 1.2816 -0.0005 5 6 4.0614 2.5090 0.0000 6 6 3.3037 3.6787 0.0004 7 6 3.9773 5.0007 0.0016 8 6 5.3738 5.0729 0.0017 9 6 6.0112 6.2995 0.0033 10 6 5.2756 7.4680 0.0096 11 9 5.9049 8.6634 0.0167 12 6 3.8662 7.4119 0.0037 13 6 3.1074 8.6041 0.0047 14 1 3.4979 9.4925 0.4785 15 6 1.8499 8.6334 -0.6082 16 7 1.0049 9.5907 -0.3222 17 14 1.3774 7.3060 -1.8345 18 1 0.6109 6.2406 -1.1399 19 1 0.5395 7.8991 -2.9077 20 1 2.6061 6.7231 -2.4310 21 6 3.2214 6.1633 0.0014 22 6 1.9119 3.6043 0.0057 23 6 1.2886 2.3741 0.0004 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 4.0191 0.3748 -0.0005 28 1 5.1400 2.5635 0.0000 29 1 5.9581 4.1647 0.0014 30 1 7.0902 6.3442 0.0038 31 1 0.1333 9.6113 -0.7474 32 1 2.1427 6.1095 0.0001 33 1 1.3221 4.5090 0.0106 34 1 0.2101 2.3158 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239485515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:25 Heat of formation + Delta-G solvation = -45.398259 kcal Electronic energy + Delta-G solvation = -19758.698943 eV Core-core repulsion = 16535.700548 eV Total energy + Delta-G solvation = -3222.998395 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.095 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.43763 -40.01996 -38.27760 -36.65236 -33.82005 -31.44525 -31.20829 -30.36278 -28.21988 -26.71968 -25.39330 -23.02685 -22.25320 -21.16916 -19.91261 -18.20891 -17.56469 -16.59130 -16.03207 -15.74046 -15.71172 -14.96735 -14.65508 -14.39767 -14.21587 -13.77632 -13.39368 -13.11579 -12.88132 -12.78376 -12.34774 -12.21324 -11.97463 -11.71725 -11.65298 -11.22841 -10.93264 -10.83231 -10.67736 -10.38263 -10.00517 -9.74529 -9.28708 -8.84059 -8.47800 -7.89192 -7.09230 -7.03241 -4.61807 1.26101 1.54812 2.41893 2.54391 2.96783 3.10592 3.21859 3.28713 3.85248 3.95740 4.45155 4.87028 4.98743 5.04908 5.09645 5.16339 5.25313 5.33726 5.50285 5.55607 5.68099 5.78782 5.80341 6.15397 6.20273 6.32281 6.43741 6.52553 6.57317 6.84081 6.90935 7.01047 7.19922 7.29504 7.43675 7.49662 7.61505 7.87004 8.21168 8.43430 8.60701 9.93561 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.006056 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.968303 B = 4622.468149 C = 5849.767979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.110 3.890 4 C -0.150 4.150 5 C -0.077 4.077 6 C -0.056 4.056 7 C -0.021 4.021 8 C -0.207 4.207 9 C -0.112 4.112 10 C -0.007 4.007 11 F -0.156 7.156 12 C 0.067 3.933 13 C -0.438 4.438 14 H 0.097 0.903 15 C 0.085 3.915 16 N -0.798 5.798 17 Si 0.903 3.097 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.241 1.241 21 C -0.204 4.204 22 C -0.080 4.080 23 C -0.204 4.204 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.288 0.712 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 -14.468 -0.762 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.066 3.934 4 C -0.169 4.169 5 C -0.095 4.095 6 C -0.056 4.056 7 C -0.021 4.021 8 C -0.227 4.227 9 C -0.131 4.131 10 C -0.027 4.027 11 F -0.135 7.135 12 C 0.063 3.937 13 C -0.466 4.466 14 H 0.115 0.885 15 C -0.135 4.135 16 N -0.422 5.422 17 Si 0.729 3.271 18 H -0.193 1.193 19 H -0.213 1.213 20 H -0.163 1.163 21 C -0.224 4.224 22 C -0.098 4.098 23 C -0.223 4.223 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.147 0.853 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.505 -14.414 -0.769 14.512 hybrid contribution -0.607 -0.013 -0.479 0.773 sum -2.112 -14.427 -1.248 14.634 Atomic orbital electron populations 1.23007 0.78807 1.03495 1.01413 1.86016 1.21075 1.27303 1.89146 1.19033 0.92356 0.83826 0.98229 1.20299 0.91132 0.98399 1.07039 1.21093 1.00096 0.90583 0.97700 1.18969 0.92673 0.93113 1.00888 1.18339 0.93028 0.90521 1.00231 1.20238 0.92692 0.95866 1.13861 1.20528 0.98431 0.91745 1.02403 1.17852 0.90582 0.79695 1.14591 1.91313 1.82283 1.45019 1.94864 1.17623 0.90229 0.93679 0.92187 1.19415 0.99114 0.97560 1.30467 0.88546 1.26135 0.94687 0.96300 0.96331 1.69686 1.06470 1.30946 1.35075 0.86437 0.80281 0.80192 0.80177 1.19253 1.21305 1.16350 1.20925 0.98183 0.91105 1.12145 1.21237 0.94340 0.97266 0.96949 1.21127 0.99755 0.92226 1.09157 0.88558 0.92731 0.92762 0.85449 0.84856 0.87414 0.87262 0.90165 0.87115 0.85341 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.21 10.49 -19.33 -0.20 -4.41 16 3 C 0.11 1.61 6.69 -39.14 -0.26 1.35 16 4 C -0.15 -2.15 9.97 -39.48 -0.39 -2.55 16 5 C -0.08 -1.20 9.42 -39.28 -0.37 -1.57 16 6 C -0.06 -1.03 5.88 -104.88 -0.62 -1.65 16 7 C -0.02 -0.44 5.87 -104.97 -0.62 -1.06 16 8 C -0.21 -4.09 9.43 -38.99 -0.37 -4.45 16 9 C -0.11 -2.33 9.99 -39.64 -0.40 -2.73 16 10 C -0.01 -0.17 7.31 -38.58 -0.28 -0.45 16 11 F -0.16 -3.80 16.76 2.25 0.04 -3.77 16 12 C 0.07 1.69 5.10 -106.80 -0.54 1.14 16 13 C -0.44 -11.88 9.25 -37.78 -0.35 -12.23 16 14 H 0.10 2.79 7.97 -52.49 -0.42 2.37 16 15 C 0.09 2.21 5.41 -17.34 -0.09 2.11 16 16 N -0.80 -20.87 13.93 55.55 0.77 -20.10 16 17 Si 0.90 20.14 24.52 -169.99 -4.17 15.97 16 18 H -0.27 -5.53 6.05 56.52 0.34 -5.19 16 19 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.24 -5.56 6.85 56.52 0.39 -5.17 16 21 C -0.20 -4.77 6.53 -38.55 -0.25 -5.02 16 22 C -0.08 -1.41 9.41 -39.28 -0.37 -1.78 16 23 C -0.20 -3.07 9.02 -39.48 -0.36 -3.42 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 26 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 27 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.13 1.81 6.18 -52.49 -0.32 1.49 16 29 H 0.11 1.77 6.17 -52.49 -0.32 1.44 16 30 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 32 H 0.11 2.54 2.95 -52.48 -0.15 2.38 16 33 H 0.13 2.34 5.51 -52.49 -0.29 2.05 16 34 H 0.13 1.56 6.28 -52.49 -0.33 1.23 16 LS Contribution 287.71 15.07 4.34 4.34 Total: -1.00 -28.14 287.71 -6.61 -34.75 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -3.11 Total: 4.26 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: -4.28 Total: -31.05 kcal Atomic # 7 Polarization: -20.87 SS G_CDS: 0.77 Total: -20.10 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.20 Total: -4.41 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.17 Total: 15.97 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.14 -6.61 -34.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239485515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.650 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds