Wall clock time and date at job start Mon Mar 30 2020 01:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35876 * 116.99616 * 2 1 4 4 C 1.39489 * 119.77886 * 0.02562 * 3 2 1 5 5 C 1.37923 * 120.62160 * 180.29563 * 4 3 2 6 6 C 1.39207 * 120.16338 * 359.45474 * 5 4 3 7 7 C 1.47788 * 120.21826 * 180.27353 * 6 5 4 8 8 C 1.39681 * 120.16837 * 65.00229 * 7 6 5 9 9 C 1.37882 * 119.87281 * 179.73691 * 8 7 6 10 10 C 1.38454 * 120.20715 * 0.53300 * 9 8 7 11 11 C 1.38311 * 120.33880 * 359.71265 * 10 9 8 12 12 C 1.38203 * 120.12295 * 0.03188 * 11 10 9 13 13 F 1.35099 * 120.10527 * 179.97438 * 12 11 10 14 14 C 1.41912 * 119.55224 * 0.54279 * 6 5 4 15 15 C 1.40876 * 120.30315 * 179.71016 * 14 6 5 16 16 H 1.08006 * 119.99671 * 25.34568 * 15 14 6 17 17 C 1.40033 * 120.00321 * 205.34807 * 15 14 6 18 18 N 1.30790 * 119.99877 * 15.46022 * 17 15 14 19 19 Si 1.86802 * 120.00154 * 195.46868 * 17 15 14 20 20 H 1.48492 * 109.47237 * 94.96131 * 19 17 15 21 21 H 1.48500 * 109.46939 * 214.96601 * 19 17 15 22 22 H 1.48503 * 109.46741 * 334.96243 * 19 17 15 23 23 C 1.37914 * 119.77820 * 180.02562 * 3 2 1 24 24 H 1.09008 * 109.46988 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47253 * 299.99444 * 1 2 3 26 26 H 1.08999 * 109.47535 * 60.00056 * 1 2 3 27 27 H 1.08001 * 119.68458 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.91824 * 179.72457 * 5 4 3 29 29 H 1.08005 * 120.05879 * 359.96208 * 8 7 6 30 30 H 1.08005 * 119.89374 * 180.24866 * 9 8 7 31 31 H 1.07995 * 119.82849 * 179.74893 * 10 9 8 32 32 H 1.07995 * 119.93688 * 180.02562 * 11 10 9 33 33 H 0.97004 * 120.00269 * 180.02562 * 18 17 15 34 34 H 1.07994 * 120.08813 * 359.95364 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2815 2.3776 0.0005 5 6 1.8894 3.6156 -0.0056 6 6 3.2780 3.7130 -0.0009 7 6 3.9307 5.0389 -0.0014 8 6 3.7790 5.8963 1.0908 9 6 4.3951 7.1299 1.0863 10 6 5.1542 7.5254 -0.0019 11 6 5.3060 6.6854 -1.0902 12 6 4.6990 5.4439 -1.0980 13 9 4.8471 4.6239 -2.1614 14 6 4.0626 2.5305 -0.0016 15 6 5.4691 2.6106 -0.0030 16 1 5.9605 3.4854 0.3967 17 6 6.2300 1.5562 -0.5228 18 7 5.6616 0.6465 -1.2711 19 14 8.0567 1.4488 -0.1473 20 1 8.2703 0.5586 1.0218 21 1 8.7728 0.8984 -1.3261 22 1 8.5792 2.8044 0.1607 23 6 3.4233 1.2776 -0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2035 2.3109 0.0014 28 1 1.2866 4.5117 -0.0096 29 1 3.1832 5.5921 1.9388 30 1 4.2813 7.7915 1.9324 31 1 5.6307 8.4946 -0.0007 32 1 5.9000 7.0004 -1.9353 33 1 6.1886 -0.0842 -1.6309 34 1 4.0094 0.3706 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239554628.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:30 Heat of formation + Delta-G solvation = -59.142035 kcal Electronic energy + Delta-G solvation = -20364.588587 eV Core-core repulsion = 17140.994218 eV Total energy + Delta-G solvation = -3223.594370 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.095 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.50686 -40.58676 -39.59145 -37.90891 -35.46524 -32.82543 -31.67033 -31.22831 -29.72495 -27.72764 -27.02420 -24.03188 -23.28378 -22.73504 -21.45394 -19.54963 -18.33496 -18.00114 -17.14606 -16.99201 -16.82287 -16.43275 -16.36113 -16.10768 -15.42378 -14.92342 -14.73797 -14.53239 -14.14509 -13.87692 -13.54323 -13.16156 -13.07467 -12.98042 -12.84610 -12.68478 -12.49483 -12.22812 -11.96393 -11.64609 -11.45367 -11.37887 -11.02994 -9.75567 -9.42028 -9.38767 -8.79155 -8.49208 -6.39673 0.35728 0.45681 0.94516 1.10506 1.32834 1.46588 1.48763 2.16371 2.66095 2.76335 2.87341 3.60550 3.67316 4.06845 4.12863 4.27755 4.31913 4.45538 4.49217 4.51980 4.59590 4.62614 4.73052 5.03150 5.09816 5.14044 5.28831 5.34051 5.42682 5.51670 5.59159 5.65593 5.86026 5.90618 6.05805 6.12621 6.22558 6.45038 6.87108 6.90399 7.02782 8.28430 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.009178 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.539384 B = 3049.970001 C = 4699.011951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.129 3.871 4 C -0.316 4.316 5 C -0.044 4.044 6 C -0.220 4.220 7 C -0.042 4.042 8 C -0.105 4.105 9 C -0.124 4.124 10 C -0.101 4.101 11 C -0.165 4.165 12 C 0.074 3.926 13 F -0.156 7.156 14 C 0.132 3.868 15 C -0.464 4.464 16 H 0.072 0.928 17 C 0.035 3.965 18 N -0.814 5.814 19 Si 0.974 3.026 20 H -0.258 1.258 21 H -0.267 1.267 22 H -0.257 1.257 23 C -0.232 4.232 24 H 0.116 0.884 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.161 0.839 31 H 0.166 0.834 32 H 0.144 0.856 33 H 0.288 0.712 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 8.721 3.404 9.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.085 3.915 4 C -0.336 4.336 5 C -0.062 4.062 6 C -0.221 4.221 7 C -0.043 4.043 8 C -0.123 4.123 9 C -0.142 4.142 10 C -0.119 4.119 11 C -0.184 4.184 12 C 0.055 3.945 13 F -0.134 7.134 14 C 0.129 3.871 15 C -0.492 4.492 16 H 0.090 0.910 17 C -0.181 4.181 18 N -0.439 5.439 19 Si 0.795 3.205 20 H -0.183 1.183 21 H -0.191 1.191 22 H -0.181 1.181 23 C -0.252 4.252 24 H 0.134 0.866 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.147 0.853 28 H 0.140 0.860 29 H 0.150 0.850 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.161 0.839 33 H 0.099 0.901 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.583 8.282 3.205 9.249 hybrid contribution 0.473 -0.799 -0.490 1.049 sum -2.110 7.484 2.716 8.236 Atomic orbital electron populations 1.23156 0.77535 1.04574 1.01541 1.85969 1.22877 1.28308 1.89484 1.19114 0.92130 0.83972 0.96300 1.20674 0.98839 0.91669 1.22372 1.20663 0.92875 0.96507 0.96141 1.18738 0.93023 0.91405 1.18978 1.18944 0.97534 0.94102 0.93731 1.21410 1.00266 0.94153 0.96515 1.21451 0.97280 0.95796 0.99681 1.21351 0.98446 1.00190 0.91893 1.21317 1.02333 0.92591 1.02156 1.18432 1.01115 0.89779 0.85201 1.91437 1.94255 1.73006 1.54749 1.17525 0.93445 0.89720 0.86379 1.19545 0.91420 1.02947 1.35319 0.90971 1.26801 1.05777 0.93652 0.91884 1.69897 1.40352 1.11037 1.22571 0.85304 0.76155 0.79910 0.79164 1.18270 1.19106 1.18084 1.20520 0.90698 0.98623 1.15402 0.86562 0.92232 0.92866 0.85307 0.86024 0.84977 0.82101 0.81650 0.83867 0.90129 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.80 113.37 1.11 1.93 16 2 O -0.35 -15.84 10.48 -92.16 -0.97 -16.81 16 3 C 0.13 6.51 6.67 22.49 0.15 6.66 16 4 C -0.32 -14.11 9.02 22.50 0.20 -13.91 16 5 C -0.04 -1.97 9.71 22.43 0.22 -1.75 16 6 C -0.22 -10.94 5.06 -19.61 -0.10 -11.03 16 7 C -0.04 -1.83 4.37 -20.00 -0.09 -1.92 16 8 C -0.11 -3.61 9.74 22.53 0.22 -3.39 16 9 C -0.12 -3.25 10.03 22.24 0.22 -3.02 16 10 C -0.10 -2.57 10.04 22.34 0.22 -2.35 16 11 C -0.17 -5.41 10.01 22.28 0.22 -5.19 16 12 C 0.07 3.18 6.49 22.66 0.15 3.32 16 13 F -0.16 -7.85 16.15 44.97 0.73 -7.12 16 14 C 0.13 7.39 5.47 -21.13 -0.12 7.28 16 15 C -0.46 -25.71 7.49 23.35 0.17 -25.54 16 16 H 0.07 3.96 7.07 -2.91 -0.02 3.94 16 17 C 0.04 1.85 5.18 85.28 0.44 2.29 16 18 N -0.81 -44.96 10.87 21.84 0.24 -44.72 16 19 Si 0.97 40.04 29.59 68.60 2.03 42.07 16 20 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 21 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 23 C -0.23 -13.19 8.60 22.78 0.20 -13.00 16 24 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 25 H 0.06 1.66 7.64 -2.39 -0.02 1.64 16 26 H 0.05 1.56 7.65 -2.39 -0.02 1.54 16 27 H 0.13 4.79 6.25 -2.91 -0.02 4.77 16 28 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 29 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 30 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 33 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 34 H 0.10 6.27 6.13 -2.91 -0.02 6.25 16 Total: -1.00 -68.51 297.57 6.38 -62.13 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 1.12 Total: 24.05 kcal Atomic # 6 Polarization: -62.83 SS G_CDS: 3.23 Total: -59.60 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.24 Total: -44.72 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.97 Total: -16.81 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 0.73 Total: -7.12 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -68.51 6.38 -62.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239554628.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.987 kcal (2) G-P(sol) polarization free energy of solvation -68.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds