Wall clock time and date at job start Mon Mar 30 2020 01:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35778 * 117.00023 * 2 1 4 4 C 1.38544 * 120.12591 * 359.97438 * 3 2 1 5 5 C 1.38224 * 120.14447 * 180.02562 * 4 3 2 6 6 C 1.38443 * 120.39747 * 0.02562 * 5 4 3 7 7 C 1.38133 * 120.24657 * 359.76348 * 6 5 4 8 8 F 1.35103 * 120.07412 * 180.27660 * 7 6 5 9 9 C 1.39848 * 119.85215 * 0.48912 * 7 6 5 10 10 C 1.47799 * 120.19679 * 179.76397 * 9 7 6 11 11 C 1.40036 * 119.88778 * 294.72637 * 10 9 7 12 12 C 1.36203 * 120.11011 * 179.97438 * 11 10 9 13 13 C 1.40961 * 119.88958 * 0.02562 * 12 11 10 14 14 C 1.40981 * 120.10989 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99635 * 204.70486 * 14 13 12 16 16 C 1.39968 * 120.00456 * 24.70073 * 14 13 12 17 17 N 1.30826 * 119.99726 * 17.98719 * 16 14 13 18 18 Si 1.86793 * 120.00153 * 197.98479 * 16 14 13 19 19 H 1.48494 * 109.47279 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46991 * 119.99856 * 18 16 14 21 21 H 1.48500 * 109.47275 * 239.99897 * 18 16 14 22 22 C 1.40959 * 119.77842 * 359.97438 * 13 12 11 23 23 C 1.36199 * 119.88502 * 0.02562 * 22 13 12 24 24 H 1.08999 * 109.46950 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46858 * 300.00230 * 1 2 3 26 26 H 1.08992 * 109.47202 * 60.00079 * 1 2 3 27 27 H 1.08003 * 119.92573 * 0.02930 * 4 3 2 28 28 H 1.08002 * 119.80574 * 180.02562 * 5 4 3 29 29 H 1.08005 * 119.87338 * 180.02562 * 6 5 4 30 30 H 1.07999 * 119.94472 * 0.27461 * 11 10 9 31 31 H 1.08002 * 120.05757 * 180.02562 * 12 11 10 32 32 H 0.97003 * 120.00293 * 180.02562 * 17 16 14 33 33 H 1.07998 * 120.05655 * 179.97438 * 22 13 12 34 34 H 1.08008 * 119.94538 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.2935 2.3734 -0.0005 5 6 1.9206 3.6052 -0.0011 6 6 3.3026 3.6876 -0.0016 7 6 4.0682 2.5379 0.0033 8 9 5.4166 2.6225 0.0084 9 6 3.4446 1.2862 -0.0015 10 6 4.2565 0.0512 -0.0016 11 6 5.0678 -0.2505 -1.1024 12 6 5.8182 -1.3872 -1.1070 13 6 5.7768 -2.2607 -0.0015 14 6 6.5520 -3.4383 -0.0011 15 1 6.2532 -4.2813 0.6042 16 6 7.7089 -3.5148 -0.7852 17 7 8.2686 -2.4208 -1.2338 18 14 8.4537 -5.1791 -1.1911 19 1 7.6368 -6.2519 -0.5691 20 1 8.4758 -5.3655 -2.6643 21 1 9.8402 -5.2430 -0.6632 22 6 4.9585 -1.9524 1.1041 23 6 4.2119 -0.8134 1.0991 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.2149 2.3178 -0.0005 28 1 1.3290 4.5087 -0.0011 29 1 3.7838 4.6546 -0.0016 30 1 5.1022 0.4216 -1.9470 31 1 6.4439 -1.6188 -1.9562 32 1 9.0702 -2.4738 -1.7776 33 1 4.9231 -2.6187 1.9533 34 1 3.5848 -0.5760 1.9459 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241012358.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:18 Heat of formation + Delta-G solvation = -57.612976 kcal Electronic energy + Delta-G solvation = -19936.212100 eV Core-core repulsion = 16712.684036 eV Total energy + Delta-G solvation = -3223.528065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.80056 -41.04571 -39.30680 -38.00171 -35.73184 -33.13923 -31.42859 -30.76743 -30.42509 -28.13409 -26.94876 -23.93063 -23.18206 -22.60625 -21.83579 -19.28983 -19.28219 -17.74924 -17.49173 -17.00675 -16.83597 -16.76923 -16.25619 -15.80364 -15.51864 -15.35797 -15.20829 -14.40868 -13.95842 -13.76883 -13.64243 -13.43511 -13.19491 -12.94763 -12.85123 -12.77228 -12.38968 -12.29317 -11.88379 -11.86181 -11.46500 -11.34119 -11.08389 -9.75102 -9.48594 -9.31123 -8.97805 -8.68438 -6.35548 0.14590 0.35590 0.92365 1.17372 1.37059 1.49251 1.53833 2.19037 2.35316 2.61082 2.73435 3.50912 3.68033 3.86404 4.05211 4.18537 4.30630 4.39000 4.44170 4.45823 4.46845 4.53579 4.77209 4.93742 5.08667 5.11059 5.20936 5.23770 5.33353 5.39082 5.40014 5.67662 5.83233 5.96339 6.06537 6.16668 6.31844 6.54858 6.64050 6.88121 6.99564 8.28486 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.004984 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.803819 B = 5616.078538 C = 6322.057850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.144 3.856 4 C -0.212 4.212 5 C -0.051 4.051 6 C -0.190 4.190 7 C 0.104 3.896 8 F -0.151 7.151 9 C -0.107 4.107 10 C -0.179 4.179 11 C -0.084 4.084 12 C -0.190 4.190 13 C 0.086 3.914 14 C -0.493 4.493 15 H 0.080 0.920 16 C 0.033 3.967 17 N -0.822 5.822 18 Si 0.988 3.012 19 H -0.255 1.255 20 H -0.263 1.263 21 H -0.264 1.264 22 C -0.244 4.244 23 C -0.059 4.059 24 H 0.108 0.892 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.167 0.833 28 H 0.178 0.822 29 H 0.156 0.844 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.290 0.710 33 H 0.101 0.899 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.613 8.906 0.586 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.098 3.902 4 C -0.230 4.230 5 C -0.068 4.068 6 C -0.209 4.209 7 C 0.085 3.915 8 F -0.129 7.129 9 C -0.109 4.109 10 C -0.180 4.180 11 C -0.102 4.102 12 C -0.210 4.210 13 C 0.084 3.916 14 C -0.522 4.522 15 H 0.098 0.902 16 C -0.182 4.182 17 N -0.447 5.447 18 Si 0.807 3.193 19 H -0.179 1.179 20 H -0.188 1.188 21 H -0.188 1.188 22 C -0.263 4.263 23 C -0.077 4.077 24 H 0.127 0.873 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.185 0.815 28 H 0.195 0.805 29 H 0.174 0.826 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.283 8.797 0.465 15.938 hybrid contribution 0.944 -0.693 -0.222 1.192 sum -12.338 8.104 0.243 14.764 Atomic orbital electron populations 1.23404 0.76307 1.05349 1.02758 1.86181 1.23457 1.26775 1.87924 1.19026 0.90196 0.85713 0.95271 1.21581 1.01628 0.91011 1.08777 1.21222 0.92643 0.98480 0.94500 1.21260 0.95216 0.96825 1.07583 1.18016 0.76675 0.94024 1.02768 1.91453 1.30604 1.97012 1.93878 1.18322 0.91636 0.92223 1.08709 1.17974 1.05376 0.97266 0.97358 1.20556 0.96408 0.96495 0.96788 1.20889 1.03176 0.97513 0.99407 1.18006 0.90535 0.92709 0.90350 1.19865 1.07430 1.00241 1.24666 0.90200 1.26891 0.96375 1.02189 0.92748 1.69909 1.17146 1.31459 1.26197 0.85088 0.78234 0.76901 0.79041 1.17877 1.18758 1.18827 1.20829 1.06558 1.00009 0.98943 1.20415 0.97184 0.93786 0.96362 0.87330 0.90764 0.91005 0.81527 0.80459 0.82629 0.89128 0.88042 0.89925 0.88110 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -10.95 9.70 -91.06 -0.88 -11.83 16 3 C 0.14 4.76 6.66 22.80 0.15 4.91 16 4 C -0.21 -4.82 9.03 22.34 0.20 -4.61 16 5 C -0.05 -1.02 10.03 22.32 0.22 -0.80 16 6 C -0.19 -5.00 10.01 22.29 0.22 -4.78 16 7 C 0.10 3.88 7.24 22.63 0.16 4.04 16 8 F -0.15 -6.41 16.69 44.97 0.75 -5.66 16 9 C -0.11 -4.36 5.32 -19.90 -0.11 -4.47 16 10 C -0.18 -8.76 4.66 -19.88 -0.09 -8.86 16 11 C -0.08 -4.45 9.50 22.23 0.21 -4.23 16 12 C -0.19 -10.94 8.63 22.46 0.19 -10.74 16 13 C 0.09 5.00 5.57 -21.27 -0.12 4.88 16 14 C -0.49 -27.78 9.03 23.36 0.21 -27.57 16 15 H 0.08 4.30 7.91 -2.91 -0.02 4.28 16 16 C 0.03 1.75 5.13 85.26 0.44 2.18 16 17 N -0.82 -44.91 10.96 21.83 0.24 -44.68 16 18 Si 0.99 39.11 29.60 68.60 2.03 41.14 16 19 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 C -0.24 -13.03 9.73 22.46 0.22 -12.81 16 23 C -0.06 -2.94 9.38 22.23 0.21 -2.73 16 24 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 26 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 27 H 0.17 2.45 6.29 -2.91 -0.02 2.44 16 28 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.09 4.52 8.06 -2.91 -0.02 4.49 16 31 H 0.10 6.01 6.16 -2.91 -0.02 5.99 16 32 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 33 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 34 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -70.04 300.42 6.50 -63.54 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 1.12 Total: 21.64 kcal Atomic # 6 Polarization: -67.40 SS G_CDS: 3.24 Total: -64.16 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.24 Total: -44.68 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.88 Total: -11.83 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.75 Total: -5.66 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -70.04 6.50 -63.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241012358.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.931 kcal (2) G-P(sol) polarization free energy of solvation -70.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds