Wall clock time and date at job start Mon Mar 30 2020 01:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35659 * 117.00311 * 2 1 4 4 N 1.32281 * 119.55597 * 359.97438 * 3 2 1 5 5 C 1.31733 * 121.85633 * 179.97438 * 4 3 2 6 6 C 1.39539 * 120.72813 * 359.97438 * 5 4 3 7 7 C 1.47859 * 120.48190 * 179.97438 * 6 5 4 8 8 C 1.39959 * 119.44957 * 359.74606 * 7 6 5 9 9 C 1.36566 * 119.46414 * 179.76405 * 8 7 6 10 10 C 1.41328 * 118.41853 * 0.49973 * 9 8 7 11 11 C 1.41025 * 120.55500 * 179.72413 * 10 9 8 12 12 H 1.08010 * 119.99656 * 330.34976 * 11 10 9 13 13 C 1.39991 * 120.00607 * 150.35080 * 11 10 9 14 14 N 1.30809 * 120.00003 * 161.80596 * 13 11 10 15 15 Si 1.86798 * 119.99685 * 341.79619 * 13 11 10 16 16 H 1.48505 * 109.46816 * 95.41297 * 15 13 11 17 17 H 1.48500 * 109.47373 * 215.41147 * 15 13 11 18 18 H 1.48494 * 109.47227 * 335.41565 * 15 13 11 19 19 C 1.40959 * 118.90128 * 359.74291 * 10 9 8 20 20 N 1.31260 * 120.40105 * 359.97438 * 19 10 9 21 21 C 1.40191 * 119.04503 * 0.02562 * 6 5 4 22 22 C 1.38428 * 118.30840 * 0.25897 * 21 6 5 23 23 O 1.35997 * 120.41287 * 179.74333 * 22 21 6 24 24 H 1.09001 * 109.47026 * 59.99578 * 1 2 3 25 25 H 1.08998 * 109.47507 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46721 * 300.00239 * 1 2 3 27 27 H 1.08003 * 119.64049 * 180.02562 * 5 4 3 28 28 H 1.07997 * 120.27269 * 0.02562 * 8 7 6 29 29 H 1.07997 * 120.79693 * 180.21673 * 9 8 7 30 30 H 0.97004 * 119.99584 * 180.02562 * 14 13 11 31 31 H 1.07996 * 119.79832 * 179.97438 * 19 10 9 32 32 H 1.07992 * 120.84789 * 179.97438 * 21 6 5 33 33 H 0.96692 * 114.00014 * 89.99819 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 7 1.3160 2.3125 -0.0005 5 6 1.8665 3.5093 0.0000 6 6 3.2542 3.6558 0.0016 7 6 3.8663 5.0017 0.0015 8 6 3.0418 6.1326 -0.0055 9 6 3.6069 7.3759 -0.0007 10 6 5.0168 7.4739 0.0006 11 6 5.6477 8.7352 -0.0003 12 1 5.1627 9.5813 -0.4645 13 6 6.9026 8.8906 0.6004 14 7 7.6445 9.9270 0.3065 15 14 7.5172 7.6181 1.8220 16 1 8.3791 6.6336 1.1197 17 1 8.3026 8.2928 2.8866 18 1 6.3588 6.9163 2.4308 19 6 5.7820 6.2901 0.0023 20 7 5.1918 5.1177 0.0033 21 6 4.0597 2.5084 0.0021 22 6 3.4394 1.2709 -0.0044 23 8 4.1795 0.1299 -0.0094 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.2369 4.3868 -0.0001 28 1 1.9675 6.0231 -0.0105 29 1 2.9911 8.2631 -0.0025 30 1 8.5142 10.0345 0.7225 31 1 6.8604 6.3482 0.0029 32 1 5.1367 2.5879 0.0030 33 1 4.3928 -0.2044 0.8724 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244843217.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:22 Heat of formation + Delta-G solvation = -41.199885 kcal Electronic energy + Delta-G solvation = -19556.240051 eV Core-core repulsion = 16353.343673 eV Total energy + Delta-G solvation = -3202.896378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.095 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83095 -40.47410 -38.87270 -38.16564 -36.00208 -33.92198 -33.07269 -32.13928 -30.63361 -28.37821 -27.03859 -24.95082 -24.29462 -23.50254 -22.32364 -19.74737 -19.63688 -19.21498 -18.28894 -17.69328 -17.20493 -16.82272 -16.37740 -15.92307 -15.64524 -15.32455 -15.02684 -14.86233 -14.77915 -14.30772 -14.00318 -13.71933 -13.42537 -13.05283 -12.87026 -12.80015 -12.48141 -12.22882 -12.15267 -11.92115 -11.37613 -10.86957 -10.68306 -10.47319 -10.08744 -9.95082 -9.07829 -8.95223 -6.59708 -0.29829 0.07379 0.72395 0.84277 1.25018 1.37552 1.42672 2.02205 2.07060 2.39396 2.75983 3.06305 3.34564 3.50805 3.52902 3.92473 3.99323 4.22509 4.37545 4.46701 4.47065 4.51453 4.63016 4.64879 4.76551 4.81728 5.00870 5.19518 5.22498 5.31168 5.53445 5.64324 5.96058 6.08326 6.14525 6.43761 6.56897 6.66230 6.80743 7.45600 7.97653 Molecular weight = 272.09amu Principal moments of inertia in cm(-1) A = 0.036686 B = 0.004265 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.048201 B = 6563.238033 C = 7136.613442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C 0.270 3.730 4 N -0.520 5.520 5 C 0.129 3.871 6 C -0.075 4.075 7 C 0.008 3.992 8 C -0.101 4.101 9 C -0.182 4.182 10 C 0.031 3.969 11 C -0.448 4.448 12 H 0.076 0.924 13 C 0.056 3.944 14 N -0.818 5.818 15 Si 0.959 3.041 16 H -0.257 1.257 17 H -0.267 1.267 18 H -0.263 1.263 19 C -0.043 4.043 20 N -0.456 5.456 21 C -0.066 4.066 22 C 0.041 3.959 23 O -0.489 6.489 24 H 0.055 0.945 25 H 0.123 0.877 26 H 0.059 0.941 27 H 0.189 0.811 28 H 0.155 0.845 29 H 0.132 0.868 30 H 0.302 0.698 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.520 -13.569 3.034 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.220 6.220 3 C 0.090 3.910 4 N -0.244 5.244 5 C -0.028 4.028 6 C -0.078 4.078 7 C -0.128 4.128 8 C -0.120 4.120 9 C -0.208 4.208 10 C 0.026 3.974 11 C -0.477 4.477 12 H 0.094 0.906 13 C -0.164 4.164 14 N -0.442 5.442 15 Si 0.782 3.218 16 H -0.183 1.183 17 H -0.192 1.192 18 H -0.188 1.188 19 C -0.206 4.206 20 N -0.164 5.164 21 C -0.093 4.093 22 C -0.006 4.006 23 O -0.299 6.299 24 H 0.074 0.926 25 H 0.141 0.859 26 H 0.078 0.922 27 H 0.206 0.794 28 H 0.172 0.828 29 H 0.150 0.850 30 H 0.113 0.887 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -9.617 -14.421 2.429 17.503 hybrid contribution 0.978 1.041 0.766 1.620 sum -8.639 -13.380 3.195 16.244 Atomic orbital electron populations 1.23095 0.75879 1.04659 1.02373 1.86246 1.24290 1.23601 1.87859 1.20516 0.88981 0.85702 0.95764 1.67323 1.39676 0.98417 1.19032 1.22820 0.91415 0.94131 0.94439 1.19392 0.93936 0.91609 1.02854 1.19095 0.88800 0.91902 1.12996 1.21648 1.00964 0.91853 0.97559 1.21384 0.93789 0.97872 1.07714 1.18844 0.94027 0.93811 0.90688 1.19523 1.01244 0.95675 1.31227 0.90614 1.26780 0.94982 0.97404 0.97193 1.69666 1.10554 1.28508 1.35440 0.85589 0.79365 0.78246 0.78587 1.18272 1.19237 1.18757 1.22429 0.98620 0.87800 1.11766 1.66923 1.12095 1.28327 1.09036 1.21870 1.01671 0.89939 0.95775 1.18236 0.86868 0.87130 1.08412 1.84836 1.71609 1.38277 1.35187 0.92606 0.85869 0.92208 0.79403 0.82758 0.85028 0.88702 0.85422 0.83768 0.73609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.38 113.37 1.18 1.81 16 2 O -0.31 -8.18 10.26 -75.83 -0.78 -8.96 16 3 C 0.27 7.99 7.51 84.95 0.64 8.62 16 4 N -0.52 -15.06 9.18 -307.36 -2.82 -17.88 16 5 C 0.13 3.72 10.58 85.02 0.90 4.62 16 6 C -0.07 -2.55 5.89 -19.94 -0.12 -2.67 16 7 C 0.01 0.33 6.74 41.92 0.28 0.62 16 8 C -0.10 -3.68 9.39 22.30 0.21 -3.47 16 9 C -0.18 -7.56 9.87 22.64 0.22 -7.33 16 10 C 0.03 1.49 5.12 -21.17 -0.11 1.38 16 11 C -0.45 -22.91 9.58 23.38 0.22 -22.69 16 12 H 0.08 4.06 8.06 -2.91 -0.02 4.04 16 13 C 0.06 2.74 5.41 85.27 0.46 3.20 16 14 N -0.82 -40.86 13.93 21.83 0.30 -40.55 16 15 Si 0.96 40.39 24.52 68.60 1.68 42.07 16 16 H -0.26 -10.53 6.71 99.48 0.67 -9.86 16 17 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 18 H -0.26 -11.76 6.86 99.48 0.68 -11.08 16 19 C -0.04 -2.07 8.36 85.45 0.71 -1.36 16 20 N -0.46 -20.69 9.46 -182.73 -1.73 -22.42 16 21 C -0.07 -2.21 9.63 22.79 0.22 -1.99 16 22 C 0.04 1.24 6.74 22.64 0.15 1.40 16 23 O -0.49 -12.85 13.30 -79.60 -1.06 -13.91 16 24 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 25 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 27 H 0.19 4.29 6.15 -2.91 -0.02 4.27 16 28 H 0.15 4.15 6.17 -2.91 -0.02 4.13 16 29 H 0.13 4.89 8.06 -2.91 -0.02 4.86 16 30 H 0.30 13.42 8.30 -92.71 -0.77 12.65 16 31 H 0.13 6.08 4.72 -2.91 -0.01 6.07 16 32 H 0.14 5.01 7.61 -2.91 -0.02 4.98 16 33 H 0.41 6.59 9.06 -74.06 -0.67 5.92 16 Total: -1.00 -60.66 288.99 1.01 -59.65 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.44 Total: 19.86 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 4.98 Total: -17.86 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -4.25 Total: -80.85 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -1.84 Total: -22.87 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.68 Total: 42.07 kcal Total: -60.66 1.01 -59.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244843217.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.450 kcal (2) G-P(sol) polarization free energy of solvation -60.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds