Wall clock time and date at job start Mon Mar 30 2020 01:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31358 * 1 3 3 Si 1.86800 * 120.00242 * 2 1 4 4 H 1.48497 * 109.47294 * 240.00194 * 3 2 1 5 5 H 1.48501 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47521 * 119.99720 * 3 2 1 7 7 C 1.39046 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00288 * 179.97438 * 7 2 1 9 9 N 1.36873 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99879 * 179.97438 * 9 7 2 11 11 O 1.21588 * 120.00344 * 0.02562 * 10 9 7 12 12 C 1.47728 * 119.99729 * 179.97438 * 10 9 7 13 13 C 1.39667 * 120.15190 * 0.24884 * 12 10 9 14 14 C 1.37916 * 119.84606 * 180.29972 * 13 12 10 15 15 C 1.38405 * 120.14997 * 359.44847 * 14 13 12 16 16 C 1.38355 * 120.30408 * 0.27958 * 15 14 13 17 17 C 1.50697 * 119.92177 * 179.97438 * 16 15 14 18 18 N 1.46504 * 109.47149 * 90.00255 * 17 16 15 19 19 C 1.35306 * 125.87190 * 124.71492 * 18 17 16 20 20 C 1.35350 * 106.17759 * 179.90551 * 19 18 17 21 21 N 1.33772 * 106.49556 * 0.35324 * 20 19 18 22 22 N 1.28634 * 108.88454 * 359.76923 * 21 20 19 23 23 C 1.37955 * 120.15317 * 359.97438 * 16 15 14 24 24 H 0.97009 * 119.99875 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00045 * 359.97438 * 9 7 2 26 26 H 1.07998 * 120.07553 * 0.02562 * 13 12 10 27 27 H 1.08002 * 119.92771 * 179.73277 * 14 13 12 28 28 H 1.08003 * 119.84550 * 180.30161 * 15 14 13 29 29 H 1.08998 * 109.47384 * 209.99874 * 17 16 15 30 30 H 1.08994 * 109.47461 * 330.00432 * 17 16 15 31 31 H 1.08005 * 126.90630 * 0.02562 * 19 18 17 32 32 H 1.08005 * 126.74960 * 180.12330 * 20 19 18 33 33 H 1.07994 * 120.07942 * 179.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.1014 1.6964 -1.2125 5 1 1.2827 2.7465 -0.0006 6 1 3.1014 1.6964 1.2125 7 6 2.0088 -1.2042 0.0005 8 1 3.0888 -1.2042 0.0001 9 7 1.3244 -2.3895 0.0005 10 6 1.9983 -3.5567 0.0005 11 8 3.2142 -3.5568 0.0010 12 6 1.2596 -4.8360 0.0011 13 6 -0.1370 -4.8397 -0.0036 14 6 -0.8203 -6.0377 0.0032 15 6 -0.1251 -7.2345 0.0032 16 6 1.2584 -7.2381 0.0021 17 6 2.0067 -8.5462 0.0027 18 7 2.2482 -8.9713 -1.3784 19 6 3.4536 -9.2647 -1.9184 20 6 3.2163 -9.6101 -3.2054 21 7 1.8955 -9.5049 -3.3895 22 7 1.3506 -9.1245 -2.2881 23 6 1.9546 -6.0471 0.0006 24 1 -0.4850 0.8401 -0.0004 25 1 0.3545 -2.3895 0.0005 26 1 -0.6807 -3.9065 -0.0081 27 1 -1.9003 -6.0420 0.0040 28 1 -0.6652 -8.1698 0.0036 29 1 2.9600 -8.4193 0.5157 30 1 1.4150 -9.3031 0.5175 31 1 4.4121 -9.2319 -1.4217 32 1 3.9496 -9.9081 -3.9402 33 1 3.0345 -6.0514 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546236823.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:16 Heat of formation + Delta-G solvation = 88.480909 kcal Electronic energy + Delta-G solvation = -19452.216507 eV Core-core repulsion = 16287.236261 eV Total energy + Delta-G solvation = -3164.980246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.21111 -39.50099 -37.65788 -34.97057 -34.17466 -31.82934 -31.07245 -30.98987 -30.61729 -27.03054 -25.40937 -23.03975 -22.75948 -22.29865 -21.13891 -19.42840 -18.31652 -17.65037 -16.80961 -16.18457 -15.79524 -15.08993 -14.93663 -14.72880 -14.39020 -14.03567 -13.85951 -13.66890 -13.23933 -12.79751 -12.64968 -12.13348 -11.72085 -11.67169 -11.44247 -11.18071 -11.02526 -10.88073 -10.54009 -10.36563 -10.12957 -9.69712 -9.39147 -8.79151 -8.60234 -8.59407 -8.16019 -6.63476 -3.96550 1.13988 1.43221 1.63399 2.47292 2.60169 3.11775 3.16721 3.20797 3.60275 4.01685 4.20801 4.38558 4.48726 4.55435 4.78562 4.97202 4.99462 5.15078 5.20756 5.21281 5.23589 5.53593 5.64956 5.68150 5.87519 6.11786 6.14585 6.18289 6.52410 6.56342 6.65136 6.73307 7.09168 7.35640 7.87623 8.41876 8.52915 8.97935 9.33160 9.88567 10.53126 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029438 B = 0.003914 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.919801 B = 7152.245380 C = 7595.907350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.025 3.975 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.297 4.297 8 H 0.108 0.892 9 N -0.539 5.539 10 C 0.462 3.538 11 O -0.599 6.599 12 C -0.095 4.095 13 C -0.088 4.088 14 C -0.125 4.125 15 C -0.084 4.084 16 C -0.134 4.134 17 C 0.162 3.838 18 N -0.284 5.284 19 C -0.051 4.051 20 C -0.057 4.057 21 N -0.278 5.278 22 N -0.076 5.076 23 C -0.055 4.055 24 H 0.277 0.723 25 H 0.394 0.606 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.190 0.810 32 H 0.187 0.813 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.095 -15.656 1.392 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.426 4.426 8 H 0.126 0.874 9 N -0.173 5.173 10 C 0.250 3.750 11 O -0.487 6.487 12 C -0.099 4.099 13 C -0.108 4.108 14 C -0.143 4.143 15 C -0.104 4.104 16 C -0.135 4.135 17 C 0.042 3.958 18 N -0.078 5.078 19 C -0.202 4.202 20 C -0.214 4.214 21 N -0.144 5.144 22 N -0.056 5.056 23 C -0.075 4.075 24 H 0.087 0.913 25 H 0.229 0.771 26 H 0.148 0.852 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.207 0.793 32 H 0.204 0.796 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.245 -15.351 1.086 15.391 hybrid contribution 0.987 0.903 0.352 1.383 sum 1.232 -14.448 1.438 14.571 Atomic orbital electron populations 1.69577 1.06182 1.29012 1.47934 1.25405 0.95708 1.00182 0.96596 0.85817 0.78834 0.79724 0.79360 1.19582 1.20689 1.19578 1.19807 0.93757 0.82109 1.46956 0.87415 1.41895 1.09523 1.04759 1.61100 1.17679 0.87480 0.83237 0.86610 1.90589 1.13219 1.86984 1.57888 1.20332 0.93443 0.94872 1.01212 1.21563 0.93644 0.98733 0.96881 1.21033 0.99977 0.92009 1.01276 1.21002 0.92958 0.98288 0.98118 1.19423 0.94157 0.92923 1.06998 1.20967 1.02960 0.95263 0.76591 1.47659 1.05462 1.42747 1.11938 1.23726 0.92021 1.08044 0.96375 1.23595 0.94461 1.07255 0.96064 1.75116 1.07460 1.15622 1.16209 1.78306 1.17247 1.17304 0.92791 1.21032 1.00312 0.90372 0.95785 0.91253 0.77104 0.85221 0.85556 0.85921 0.86705 0.87486 0.79336 0.79575 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.32 13.05 55.50 0.72 -22.60 16 2 C 0.02 0.65 5.50 -17.45 -0.10 0.55 16 3 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.30 -8.14 9.68 -15.00 -0.15 -8.29 16 8 H 0.11 3.07 7.15 -52.49 -0.38 2.70 16 9 N -0.54 -13.77 5.23 -11.87 -0.06 -13.83 16 10 C 0.46 11.36 7.72 -12.38 -0.10 11.27 16 11 O -0.60 -16.58 15.92 5.29 0.08 -16.50 16 12 C -0.09 -1.87 5.87 -104.97 -0.62 -2.48 16 13 C -0.09 -1.50 9.54 -39.17 -0.37 -1.88 16 14 C -0.12 -1.74 10.03 -39.64 -0.40 -2.14 16 15 C -0.08 -1.09 9.69 -39.48 -0.38 -1.48 16 16 C -0.13 -1.80 5.24 -104.68 -0.55 -2.34 16 17 C 0.16 1.58 6.58 -5.19 -0.03 1.54 16 18 N -0.28 -3.46 3.43 -62.44 -0.21 -3.68 16 19 C -0.05 -0.52 11.57 -17.05 -0.20 -0.72 16 20 C -0.06 -0.66 12.05 -17.74 -0.21 -0.87 16 21 N -0.28 -4.29 12.41 30.24 0.38 -3.91 16 22 N -0.08 -1.17 12.92 60.35 0.78 -0.39 16 23 C -0.05 -0.93 9.25 -39.17 -0.36 -1.29 16 24 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.39 9.50 5.93 -40.82 -0.24 9.26 16 26 H 0.13 2.17 6.41 -52.49 -0.34 1.84 16 27 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 29 H 0.11 0.80 8.01 -51.93 -0.42 0.39 16 30 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.19 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.19 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.13 2.22 7.65 -52.49 -0.40 1.82 16 LS Contribution 300.33 15.07 4.53 4.53 Total: -1.00 -33.78 300.33 -5.29 -39.07 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -3.02 Total: 10.15 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -3.46 Total: -8.13 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 1.60 Total: -44.41 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.08 Total: -16.50 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.78 -5.29 -39.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236823.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.551 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds