Wall clock time and date at job start Mon Mar 30 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31358 * 1 3 3 Si 1.86800 * 120.00242 * 2 1 4 4 H 1.48497 * 109.47294 * 240.00194 * 3 2 1 5 5 H 1.48501 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47521 * 119.99720 * 3 2 1 7 7 C 1.39046 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00288 * 179.97438 * 7 2 1 9 9 N 1.36873 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99879 * 179.97438 * 9 7 2 11 11 O 1.21588 * 120.00344 * 0.02562 * 10 9 7 12 12 C 1.47728 * 119.99729 * 179.97438 * 10 9 7 13 13 C 1.39667 * 120.15190 * 0.24884 * 12 10 9 14 14 C 1.37916 * 119.84606 * 180.29972 * 13 12 10 15 15 C 1.38405 * 120.14997 * 359.44847 * 14 13 12 16 16 C 1.38355 * 120.30408 * 0.27958 * 15 14 13 17 17 C 1.50697 * 119.92177 * 179.97438 * 16 15 14 18 18 N 1.46504 * 109.47149 * 90.00255 * 17 16 15 19 19 C 1.35306 * 125.87190 * 124.71492 * 18 17 16 20 20 C 1.35350 * 106.17759 * 179.90551 * 19 18 17 21 21 N 1.33772 * 106.49556 * 0.35324 * 20 19 18 22 22 N 1.28634 * 108.88454 * 359.76923 * 21 20 19 23 23 C 1.37955 * 120.15317 * 359.97438 * 16 15 14 24 24 H 0.97009 * 119.99875 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00045 * 359.97438 * 9 7 2 26 26 H 1.07998 * 120.07553 * 0.02562 * 13 12 10 27 27 H 1.08002 * 119.92771 * 179.73277 * 14 13 12 28 28 H 1.08003 * 119.84550 * 180.30161 * 15 14 13 29 29 H 1.08998 * 109.47384 * 209.99874 * 17 16 15 30 30 H 1.08994 * 109.47461 * 330.00432 * 17 16 15 31 31 H 1.08005 * 126.90630 * 0.02562 * 19 18 17 32 32 H 1.08005 * 126.74960 * 180.12330 * 20 19 18 33 33 H 1.07994 * 120.07942 * 179.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.1014 1.6964 -1.2125 5 1 1.2827 2.7465 -0.0006 6 1 3.1014 1.6964 1.2125 7 6 2.0088 -1.2042 0.0005 8 1 3.0888 -1.2042 0.0001 9 7 1.3244 -2.3895 0.0005 10 6 1.9983 -3.5567 0.0005 11 8 3.2142 -3.5568 0.0010 12 6 1.2596 -4.8360 0.0011 13 6 -0.1370 -4.8397 -0.0036 14 6 -0.8203 -6.0377 0.0032 15 6 -0.1251 -7.2345 0.0032 16 6 1.2584 -7.2381 0.0021 17 6 2.0067 -8.5462 0.0027 18 7 2.2482 -8.9713 -1.3784 19 6 3.4536 -9.2647 -1.9184 20 6 3.2163 -9.6101 -3.2054 21 7 1.8955 -9.5049 -3.3895 22 7 1.3506 -9.1245 -2.2881 23 6 1.9546 -6.0471 0.0006 24 1 -0.4850 0.8401 -0.0004 25 1 0.3545 -2.3895 0.0005 26 1 -0.6807 -3.9065 -0.0081 27 1 -1.9003 -6.0420 0.0040 28 1 -0.6652 -8.1698 0.0036 29 1 2.9600 -8.4193 0.5157 30 1 1.4150 -9.3031 0.5175 31 1 4.4121 -9.2319 -1.4217 32 1 3.9496 -9.9081 -3.9402 33 1 3.0345 -6.0514 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236823.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:15 Heat of formation + Delta-G solvation = 64.743812 kcal Electronic energy + Delta-G solvation = -19453.245825 eV Core-core repulsion = 16287.236261 eV Total energy + Delta-G solvation = -3166.009564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.10805 -40.97794 -39.30902 -36.17670 -35.96504 -33.58420 -32.35991 -32.04043 -31.83366 -28.09227 -27.22119 -24.53983 -23.75867 -23.28045 -22.24781 -21.03644 -20.22375 -18.69980 -18.07483 -17.35348 -17.22619 -16.56686 -16.29628 -15.85356 -15.61941 -15.54635 -15.37302 -15.04980 -14.58933 -14.18987 -13.63621 -13.57670 -13.42712 -12.96716 -12.78386 -12.57129 -12.46722 -12.17368 -12.13087 -11.83142 -11.63574 -11.08449 -10.57335 -10.26670 -10.19515 -9.98302 -9.89648 -8.60192 -6.05902 -0.11214 0.19915 0.75634 1.38321 1.38830 1.50478 1.60647 1.69464 2.08735 2.23071 2.82170 3.00862 3.24996 3.39687 3.66869 3.81306 3.95251 4.03510 4.19644 4.27582 4.33046 4.38451 4.39896 4.57433 4.79571 4.84593 4.97687 5.28240 5.30888 5.37733 5.40117 5.41794 5.71550 5.84055 5.92381 6.44158 6.96800 7.37172 7.59698 7.93369 8.56805 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029438 B = 0.003914 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.919801 B = 7152.245380 C = 7595.907350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.008 4.008 3 Si 1.000 3.000 4 H -0.270 1.270 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.341 4.341 8 H 0.084 0.916 9 N -0.551 5.551 10 C 0.460 3.540 11 O -0.639 6.639 12 C -0.133 4.133 13 C -0.095 4.095 14 C -0.120 4.120 15 C -0.067 4.067 16 C -0.124 4.124 17 C 0.158 3.842 18 N -0.286 5.286 19 C -0.039 4.039 20 C -0.070 4.070 21 N -0.319 5.319 22 N -0.116 5.116 23 C -0.061 4.061 24 H 0.284 0.716 25 H 0.398 0.602 26 H 0.122 0.878 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.232 0.768 32 H 0.214 0.786 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -17.647 1.974 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.471 4.471 8 H 0.102 0.898 9 N -0.185 5.185 10 C 0.250 3.750 11 O -0.529 6.529 12 C -0.136 4.136 13 C -0.115 4.115 14 C -0.138 4.138 15 C -0.086 4.086 16 C -0.125 4.125 17 C 0.039 3.961 18 N -0.080 5.080 19 C -0.190 4.190 20 C -0.228 4.228 21 N -0.184 5.184 22 N -0.095 5.095 23 C -0.081 4.081 24 H 0.093 0.907 25 H 0.233 0.767 26 H 0.140 0.860 27 H 0.177 0.823 28 H 0.177 0.823 29 H 0.164 0.836 30 H 0.158 0.842 31 H 0.248 0.752 32 H 0.231 0.769 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.017 -17.361 1.670 17.441 hybrid contribution 1.057 1.275 0.172 1.665 sum 1.040 -16.086 1.843 16.225 Atomic orbital electron populations 1.69634 1.07092 1.30111 1.48082 1.26212 0.96621 1.02778 0.95348 0.84888 0.77824 0.75827 0.79227 1.19532 1.19002 1.19240 1.19776 0.93122 0.83776 1.50380 0.89755 1.41898 1.09599 1.04792 1.62232 1.18549 0.87367 0.84697 0.84360 1.90527 1.15179 1.88017 1.59164 1.20062 0.94553 0.93258 1.05715 1.21584 0.92560 1.00038 0.97283 1.21406 1.01670 0.90984 0.99732 1.21537 0.92999 0.99329 0.94766 1.19739 0.94675 0.93357 1.04725 1.21312 1.04929 0.93805 0.76008 1.47837 1.05763 1.42156 1.12217 1.24444 0.92846 1.05724 0.95958 1.24213 0.93779 1.07185 0.97598 1.75047 1.09513 1.16851 1.17010 1.78222 1.18456 1.19354 0.93500 1.21096 1.00165 0.90772 0.96069 0.90659 0.76691 0.85965 0.82259 0.82322 0.83606 0.84156 0.75167 0.76904 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.70 13.05 21.68 0.28 -48.42 16 2 C -0.01 -0.43 5.50 84.96 0.47 0.04 16 3 Si 1.00 42.25 29.55 68.60 2.03 44.28 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.34 -19.70 9.68 84.10 0.81 -18.89 16 8 H 0.08 5.13 7.15 -2.91 -0.02 5.11 16 9 N -0.55 -29.71 5.23 -309.74 -1.62 -31.33 16 10 C 0.46 23.86 7.72 86.75 0.67 24.53 16 11 O -0.64 -37.27 15.92 -3.99 -0.06 -37.33 16 12 C -0.13 -5.33 5.87 -20.09 -0.12 -5.45 16 13 C -0.10 -3.22 9.54 22.54 0.22 -3.00 16 14 C -0.12 -3.04 10.03 22.23 0.22 -2.81 16 15 C -0.07 -1.50 9.69 22.34 0.22 -1.28 16 16 C -0.12 -2.96 5.24 -19.90 -0.10 -3.07 16 17 C 0.16 2.41 6.58 85.63 0.56 2.97 16 18 N -0.29 -6.04 3.43 -351.47 -1.21 -7.24 16 19 C -0.04 -0.66 11.57 83.49 0.97 0.31 16 20 C -0.07 -1.47 12.05 83.73 1.01 -0.46 16 21 N -0.32 -9.44 12.41 -58.25 -0.72 -10.16 16 22 N -0.12 -3.31 12.92 37.02 0.48 -2.83 16 23 C -0.06 -2.02 9.25 22.54 0.21 -1.81 16 24 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 25 H 0.40 20.23 5.93 -92.71 -0.55 19.69 16 26 H 0.12 4.23 6.41 -2.91 -0.02 4.21 16 27 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.15 1.35 8.01 -2.39 -0.02 1.33 16 30 H 0.14 1.27 8.08 -2.39 -0.02 1.25 16 31 H 0.23 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.12 4.18 7.65 -2.91 -0.02 4.16 16 Total: -1.00 -78.62 300.33 4.91 -73.70 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.61 Total: 28.27 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.13 Total: -8.93 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -2.79 Total: -99.98 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.06 Total: -37.33 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -78.62 4.91 -73.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236823.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.448 kcal (2) G-P(sol) polarization free energy of solvation -78.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds