Wall clock time and date at job start Mon Mar 30 2020 01:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48495 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46975 * 299.99903 * 3 2 1 6 6 H 1.48503 * 109.47153 * 59.99600 * 3 2 1 7 7 C 1.39927 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00581 * 197.90630 * 7 2 1 9 9 C 1.41416 * 120.00026 * 17.91059 * 7 2 1 10 10 C 1.40791 * 120.20460 * 24.43072 * 9 7 2 11 11 C 1.37641 * 119.89099 * 180.02562 * 10 9 7 12 12 C 1.38519 * 120.32964 * 359.74735 * 11 10 9 13 13 C 1.39302 * 120.42085 * 0.51379 * 12 11 10 14 14 N 1.39680 * 119.95323 * 179.76630 * 13 12 11 15 15 C 1.46504 * 119.99866 * 359.71920 * 14 13 12 16 16 C 1.50706 * 109.46881 * 180.02562 * 15 14 13 17 17 C 1.38752 * 120.38589 * 90.00568 * 16 15 14 18 18 C 1.38506 * 118.44783 * 180.29804 * 17 16 15 19 19 C 1.38562 * 119.13650 * 359.44673 * 18 17 16 20 20 F 1.35104 * 119.64985 * 180.27611 * 19 18 17 21 21 N 1.32031 * 120.69962 * 0.56346 * 19 18 17 22 22 C 1.31938 * 121.68997 * 359.71508 * 21 19 18 23 23 C 1.38313 * 120.09276 * 359.48571 * 13 12 11 24 24 H 0.96998 * 119.99988 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.05348 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.83523 * 180.02562 * 11 10 9 27 27 H 1.07994 * 119.79563 * 180.27784 * 12 11 10 28 28 H 0.97002 * 120.00136 * 179.72660 * 14 13 12 29 29 H 1.08999 * 109.46843 * 60.00723 * 15 14 13 30 30 H 1.08999 * 109.47193 * 300.00486 * 15 14 13 31 31 H 1.07993 * 120.77428 * 0.02562 * 17 16 15 32 32 H 1.07995 * 120.42723 * 179.72543 * 18 17 16 33 33 H 1.07997 * 119.60150 * 180.02562 * 22 21 19 34 34 H 1.08002 * 120.15902 * 180.23245 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2343 0.2881 9 6 1.3524 -2.4070 -0.3756 10 6 0.2219 -2.3613 -1.2134 11 6 -0.4116 -3.5285 -1.5750 12 6 0.0607 -4.7497 -1.1229 13 6 1.1749 -4.8101 -0.2890 14 7 1.6398 -6.0465 0.1651 15 6 0.9521 -7.2781 -0.2306 16 6 1.6472 -8.4629 0.3892 17 6 1.2622 -8.9278 1.6386 18 6 1.9326 -10.0157 2.1731 19 6 2.9506 -10.6065 1.4420 20 9 3.6076 -11.6717 1.9510 21 7 3.2892 -10.1361 0.2557 22 6 2.6749 -9.0984 -0.2795 23 6 1.8249 -3.6480 0.0852 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1477 -1.4119 -1.5718 26 1 -1.2785 -3.4924 -2.2181 27 1 -0.4403 -5.6605 -1.4156 28 1 2.4180 -6.0897 0.7426 29 1 0.9715 -7.3721 -1.3164 30 1 -0.0818 -7.2432 0.1127 31 1 0.4616 -8.4499 2.1834 32 1 1.6622 -10.4011 3.1450 33 1 2.9791 -8.7419 -1.2525 34 1 2.6911 -3.6939 0.7287 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657977936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:32 Heat of formation + Delta-G solvation = -3.509378 kcal Electronic energy + Delta-G solvation = -18894.897838 eV Core-core repulsion = 15706.008632 eV Total energy + Delta-G solvation = -3188.889206 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.10568 -41.26421 -39.54844 -36.89743 -35.14495 -33.70925 -32.50844 -31.63858 -29.40761 -27.12612 -26.46287 -25.01270 -23.43240 -22.49613 -21.80499 -19.17536 -19.14121 -18.39056 -17.48384 -17.26117 -17.14006 -16.32959 -16.07419 -15.74007 -15.40132 -15.11751 -14.73067 -14.51619 -14.37633 -14.11714 -14.02567 -13.90433 -13.35052 -13.03789 -12.81194 -12.61920 -12.45653 -12.08089 -11.68347 -11.19200 -11.07048 -11.05421 -10.78502 -10.43940 -10.03327 -9.30453 -8.59354 -7.92693 -6.30282 -0.25790 0.05633 1.06942 1.36736 1.40581 1.54652 1.60374 2.23862 2.37206 2.50447 2.82496 3.01207 3.43654 3.62891 3.78459 3.86448 3.89923 4.28814 4.53380 4.59321 4.69685 4.72995 4.81473 4.84196 5.16701 5.17680 5.19375 5.25739 5.44258 5.52937 5.61041 5.95494 6.05252 6.23537 6.34039 6.52214 6.64233 6.91900 7.02912 7.05511 7.25558 8.38901 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.036654 B = 0.003168 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.720290 B = 8837.309300 C = 9236.973884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.070 0.930 9 C 0.112 3.888 10 C -0.233 4.233 11 C -0.076 4.076 12 C -0.299 4.299 13 C 0.236 3.764 14 N -0.750 5.750 15 C 0.182 3.818 16 C -0.156 4.156 17 C -0.025 4.025 18 C -0.183 4.183 19 C 0.286 3.714 20 F -0.121 7.121 21 N -0.543 5.543 22 C 0.149 3.851 23 C -0.311 4.311 24 H 0.286 0.714 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.394 0.606 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.170 0.830 32 H 0.177 0.823 33 H 0.180 0.820 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 -14.915 2.620 15.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.534 4.534 8 H 0.088 0.912 9 C 0.109 3.891 10 C -0.253 4.253 11 C -0.095 4.095 12 C -0.322 4.322 13 C 0.135 3.865 14 N -0.383 5.383 15 C 0.058 3.942 16 C -0.159 4.159 17 C -0.051 4.051 18 C -0.204 4.204 19 C 0.133 3.867 20 F -0.101 7.101 21 N -0.258 5.258 22 C -0.008 4.008 23 C -0.336 4.336 24 H 0.097 0.903 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.138 0.862 28 H 0.228 0.772 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.188 0.812 32 H 0.194 0.806 33 H 0.197 0.803 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.759 -15.378 2.127 15.543 hybrid contribution 0.189 0.989 0.757 1.259 sum 0.948 -14.389 2.884 14.706 Atomic orbital electron populations 1.69917 1.08936 1.30243 1.35820 1.26717 0.95463 1.04359 0.91264 0.85210 0.79391 0.76447 0.78928 1.18381 1.18879 1.19049 1.19828 0.98204 0.92769 1.42605 0.91178 1.17688 0.91065 0.92401 0.87926 1.21120 1.01780 0.97040 1.05402 1.20748 0.97929 0.92703 0.98081 1.20194 1.03042 0.97139 1.11798 1.17454 0.92322 0.84738 0.92000 1.44466 1.34632 1.01911 1.57243 1.19989 0.95369 0.79791 0.99089 1.20964 0.99088 0.99050 0.96808 1.21810 0.97486 0.92627 0.93156 1.22100 0.96609 0.98409 1.03241 1.18552 0.91591 0.86191 0.90396 1.91605 1.80306 1.52893 1.85251 1.67025 1.31181 1.15289 1.12306 1.22730 0.90121 0.88194 0.99761 1.20514 1.07318 0.92146 1.13585 0.90318 0.88787 0.87348 0.86223 0.77206 0.90865 0.90808 0.81212 0.80581 0.80316 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.81 10.96 21.82 0.24 -43.57 16 2 C 0.04 1.89 5.14 85.25 0.44 2.33 16 3 Si 0.98 38.88 29.59 68.60 2.03 40.91 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 7 C -0.50 -27.90 9.05 23.46 0.21 -27.69 16 8 H 0.07 3.78 7.91 -2.91 -0.02 3.76 16 9 C 0.11 6.16 5.57 -21.31 -0.12 6.04 16 10 C -0.23 -12.44 8.70 22.75 0.20 -12.25 16 11 C -0.08 -3.48 10.01 22.20 0.22 -3.25 16 12 C -0.30 -12.25 9.32 22.59 0.21 -12.04 16 13 C 0.24 9.73 6.64 38.16 0.25 9.98 16 14 N -0.75 -22.76 5.72 -343.28 -1.96 -24.72 16 15 C 0.18 4.04 5.05 85.63 0.43 4.47 16 16 C -0.16 -2.94 5.26 -19.77 -0.10 -3.05 16 17 C -0.02 -0.39 9.86 22.46 0.22 -0.17 16 18 C -0.18 -2.88 10.09 22.41 0.23 -2.65 16 19 C 0.29 6.19 8.41 84.74 0.71 6.91 16 20 F -0.12 -2.74 17.29 44.97 0.78 -1.96 16 21 N -0.54 -13.13 10.37 -196.92 -2.04 -15.17 16 22 C 0.15 3.04 10.86 84.64 0.92 3.96 16 23 C -0.31 -15.26 9.63 22.85 0.22 -15.04 16 24 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 25 H 0.09 5.30 6.15 -2.91 -0.02 5.28 16 26 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 27 H 0.12 4.06 6.70 -2.91 -0.02 4.04 16 28 H 0.39 11.35 8.47 -92.71 -0.79 10.57 16 29 H 0.07 1.57 7.88 -2.39 -0.02 1.55 16 30 H 0.07 1.57 7.90 -2.39 -0.02 1.55 16 31 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.18 3.12 8.06 -2.91 -0.02 3.09 16 34 H 0.09 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -63.64 302.45 3.43 -60.21 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.35 Total: 26.74 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 4.04 Total: -42.44 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -3.77 Total: -83.46 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -63.64 3.43 -60.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657977936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.701 kcal (2) G-P(sol) polarization free energy of solvation -63.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds