Wall clock time and date at job start Mon Mar 30 2020 01:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36868 * 119.99746 * 2 1 4 4 H 1.08000 * 120.00103 * 214.98196 * 3 2 1 5 5 C 1.39046 * 120.00289 * 34.99093 * 3 2 1 6 6 N 1.31368 * 119.99770 * 5.18419 * 5 3 2 7 7 Si 1.86800 * 120.00205 * 185.18548 * 5 3 2 8 8 H 1.48491 * 109.46998 * 59.99824 * 7 5 3 9 9 H 1.48503 * 109.46918 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46866 * 299.99599 * 7 5 3 11 11 C 1.34777 * 120.00155 * 180.02562 * 2 1 3 12 12 O 1.21600 * 119.99824 * 5.47999 * 11 2 1 13 13 C 1.47706 * 119.99828 * 185.47252 * 11 2 1 14 14 N 1.34208 * 125.64898 * 355.10343 * 13 11 2 15 15 C 1.30475 * 109.82953 * 180.02562 * 14 13 11 16 16 N 1.35070 * 108.31023 * 359.97438 * 15 14 13 17 17 C 1.40127 * 126.75862 * 179.97438 * 16 15 14 18 18 C 1.38860 * 120.06765 * 180.02562 * 17 16 15 19 19 C 1.38113 * 119.93156 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.06697 * 0.02562 * 19 18 17 21 21 C 1.38289 * 120.13848 * 359.97438 * 20 19 18 22 22 C 1.38112 * 120.06938 * 0.02562 * 21 20 19 23 23 N 1.31810 * 125.64380 * 175.46108 * 13 11 2 24 24 H 1.08999 * 109.46821 * 264.99904 * 1 2 3 25 25 H 1.09006 * 109.47221 * 24.99350 * 1 2 3 26 26 H 1.08995 * 109.47673 * 145.00098 * 1 2 3 27 27 H 0.96999 * 119.99908 * 179.97438 * 6 5 3 28 28 H 1.08000 * 125.84452 * 179.97438 * 15 14 13 29 29 H 1.07995 * 120.03156 * 359.97438 * 18 17 16 30 30 H 1.07995 * 119.96614 * 180.02562 * 19 18 17 31 31 H 1.08002 * 119.93017 * 179.72416 * 20 19 18 32 32 H 1.08002 * 119.96721 * 180.02562 * 21 20 19 33 33 H 1.07992 * 120.03623 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 3.0829 1.2699 -0.5362 5 6 1.6425 2.2807 0.6905 6 7 0.5617 2.1509 1.4258 7 14 2.4987 3.9368 0.5726 8 1 2.5193 4.3836 -0.8433 9 1 1.7655 4.9326 1.3948 10 1 3.8913 3.8107 1.0724 11 6 2.1389 -1.1672 -0.0005 12 8 1.5350 -2.2178 -0.1016 13 6 3.6109 -1.1701 0.1215 14 7 4.3959 -0.0818 0.1457 15 6 5.6452 -0.4397 0.2620 16 7 5.6969 -1.7883 0.3170 17 6 6.8471 -2.5790 0.4409 18 6 6.7388 -3.9627 0.4836 19 6 7.8742 -4.7394 0.6063 20 6 9.1179 -4.1404 0.6872 21 6 9.2291 -2.7626 0.6450 22 6 8.0974 -1.9805 0.5224 23 7 4.3715 -2.2422 0.2179 24 1 -0.3633 -0.0896 1.0238 25 1 -0.3634 0.9315 -0.4342 26 1 -0.3634 -0.8418 -0.5894 27 1 0.2084 2.9149 1.9078 28 1 6.4928 0.2281 0.3067 29 1 5.7676 -4.4310 0.4217 30 1 7.7907 -5.8156 0.6392 31 1 10.0040 -4.7496 0.7876 32 1 10.2019 -2.2977 0.7080 33 1 8.1848 -0.9046 0.4890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035958253.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:54 Heat of formation + Delta-G solvation = 110.108246 kcal Electronic energy + Delta-G solvation = -19898.361351 eV Core-core repulsion = 16734.318937 eV Total energy + Delta-G solvation = -3164.042414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.83493 -39.24210 -38.11536 -34.78948 -33.93002 -31.52488 -31.40843 -30.60222 -29.43279 -26.72371 -25.01448 -23.69191 -23.22770 -21.49658 -21.06902 -19.11964 -18.38313 -17.21339 -16.30434 -15.75362 -15.53882 -15.13666 -14.79136 -14.44311 -14.25196 -13.91153 -13.81933 -13.57625 -12.93894 -12.74603 -12.04291 -11.80693 -11.72038 -11.28620 -11.22662 -11.10746 -10.85844 -10.59687 -10.44922 -10.36228 -9.42485 -9.38525 -9.21674 -9.04185 -8.71504 -8.29311 -7.59481 -6.34649 -3.95918 0.72823 1.13598 2.06393 2.41166 2.89740 3.23673 3.24874 3.27984 3.64423 4.06707 4.30608 4.39708 4.46829 4.65152 4.76452 4.91055 5.09195 5.15693 5.17840 5.31987 5.53795 5.70490 5.87315 6.12945 6.21623 6.28894 6.52572 6.62073 6.67005 6.83538 6.93895 7.20073 7.27845 7.61579 7.81806 8.38137 8.53446 9.09722 9.43086 9.82799 10.69714 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.005003 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.633612 B = 5595.503527 C = 6568.606055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.405 5.405 3 C -0.317 4.317 4 H 0.124 0.876 5 C 0.038 3.962 6 N -0.872 5.872 7 Si 0.930 3.070 8 H -0.273 1.273 9 H -0.286 1.286 10 H -0.269 1.269 11 C 0.524 3.476 12 O -0.592 6.592 13 C 0.240 3.760 14 N -0.469 5.469 15 C 0.236 3.764 16 N -0.347 5.347 17 C 0.167 3.833 18 C -0.118 4.118 19 C -0.096 4.096 20 C -0.135 4.135 21 C -0.095 4.095 22 C -0.141 4.141 23 N -0.276 5.276 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.270 0.730 28 H 0.218 0.782 29 H 0.139 0.861 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.233 -4.869 -0.955 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.122 5.122 3 C -0.446 4.446 4 H 0.141 0.859 5 C -0.167 4.167 6 N -0.509 5.509 7 Si 0.756 3.244 8 H -0.198 1.198 9 H -0.212 1.212 10 H -0.195 1.195 11 C 0.309 3.691 12 O -0.477 6.477 13 C -0.042 4.042 14 N -0.194 5.194 15 C -0.059 4.059 16 N -0.133 5.133 17 C 0.073 3.927 18 C -0.138 4.138 19 C -0.115 4.115 20 C -0.154 4.154 21 C -0.113 4.113 22 C -0.162 4.162 23 N -0.104 5.104 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.234 0.766 29 H 0.157 0.843 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.266 -5.603 -0.916 16.288 hybrid contribution 0.771 1.148 0.239 1.403 sum 16.038 -4.455 -0.676 16.659 Atomic orbital electron populations 1.21401 0.79696 0.99931 1.01224 1.43403 1.05863 1.04474 1.58431 1.20330 1.07400 0.86305 1.30600 0.85877 1.25574 0.96186 1.00591 0.94376 1.69944 1.21417 1.31791 1.27786 0.85949 0.79511 0.80587 0.78332 1.19809 1.21197 1.19455 1.16503 0.81992 0.84658 0.85968 1.90669 1.67544 1.31491 1.57976 1.24372 0.97110 0.85026 0.97655 1.71354 0.98871 1.29071 1.20078 1.26547 0.98225 0.83405 0.97722 1.48162 1.05133 1.05891 1.54164 1.17666 0.83461 0.90781 1.00783 1.21062 1.00490 0.91386 1.00896 1.21085 0.91775 1.00116 0.98524 1.21207 0.97701 0.94913 1.01537 1.20942 0.97790 0.93696 0.98898 1.20835 0.90316 1.00641 1.04429 1.78556 0.85522 1.20854 1.25433 0.92473 0.91191 0.94240 0.91983 0.76609 0.84267 0.85176 0.85610 0.85084 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.00 8.71 59.85 0.52 3.53 16 2 N -0.41 -10.93 2.97 -123.33 -0.37 -11.30 16 3 C -0.32 -8.37 8.08 -15.00 -0.12 -8.49 16 4 H 0.12 3.19 5.68 -52.49 -0.30 2.89 16 5 C 0.04 0.99 5.18 -17.45 -0.09 0.90 16 6 N -0.87 -23.27 11.15 55.50 0.62 -22.65 16 7 Si 0.93 19.96 29.56 -169.99 -5.02 14.94 16 8 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 9 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 11 C 0.52 14.28 7.63 -12.39 -0.09 14.18 16 12 O -0.59 -17.14 16.71 5.28 0.09 -17.05 16 13 C 0.24 5.89 7.69 -156.47 -1.20 4.69 16 14 N -0.47 -10.31 7.83 -12.39 -0.10 -10.41 16 15 C 0.24 4.01 11.96 -90.37 -1.08 2.93 16 16 N -0.35 -6.18 3.82 -11.81 -0.05 -6.23 16 17 C 0.17 2.38 6.70 -83.61 -0.56 1.82 16 18 C -0.12 -1.59 9.68 -39.40 -0.38 -1.97 16 19 C -0.10 -0.97 10.04 -39.61 -0.40 -1.37 16 20 C -0.13 -1.15 10.04 -39.55 -0.40 -1.55 16 21 C -0.09 -0.81 10.04 -39.61 -0.40 -1.21 16 22 C -0.14 -1.49 9.47 -39.40 -0.37 -1.87 16 23 N -0.28 -6.20 12.06 32.02 0.39 -5.82 16 24 H 0.06 1.47 7.73 -51.93 -0.40 1.07 16 25 H 0.07 1.71 7.30 -51.93 -0.38 1.33 16 26 H 0.04 0.93 7.50 -51.93 -0.39 0.54 16 27 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.22 2.39 7.09 -52.49 -0.37 2.02 16 29 H 0.14 2.07 7.73 -52.49 -0.41 1.67 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.13 1.08 6.80 -52.49 -0.36 0.72 16 LS Contribution 292.95 15.07 4.41 4.41 Total: -1.00 -33.29 292.95 -7.61 -40.89 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.01 Total: 1.61 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: -4.58 Total: 11.59 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.50 Total: -56.40 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.09 Total: -17.05 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.29 -7.61 -40.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035958253.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.003 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds