Wall clock time and date at job start Mon Mar 30 2020 01:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36868 * 119.99746 * 2 1 4 4 H 1.08000 * 120.00103 * 214.98196 * 3 2 1 5 5 C 1.39046 * 120.00289 * 34.99093 * 3 2 1 6 6 N 1.31368 * 119.99770 * 5.18419 * 5 3 2 7 7 Si 1.86800 * 120.00205 * 185.18548 * 5 3 2 8 8 H 1.48491 * 109.46998 * 59.99824 * 7 5 3 9 9 H 1.48503 * 109.46918 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46866 * 299.99599 * 7 5 3 11 11 C 1.34777 * 120.00155 * 180.02562 * 2 1 3 12 12 O 1.21600 * 119.99824 * 5.47999 * 11 2 1 13 13 C 1.47706 * 119.99828 * 185.47252 * 11 2 1 14 14 N 1.34208 * 125.64898 * 355.10343 * 13 11 2 15 15 C 1.30475 * 109.82953 * 180.02562 * 14 13 11 16 16 N 1.35070 * 108.31023 * 359.97438 * 15 14 13 17 17 C 1.40127 * 126.75862 * 179.97438 * 16 15 14 18 18 C 1.38860 * 120.06765 * 180.02562 * 17 16 15 19 19 C 1.38113 * 119.93156 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.06697 * 0.02562 * 19 18 17 21 21 C 1.38289 * 120.13848 * 359.97438 * 20 19 18 22 22 C 1.38112 * 120.06938 * 0.02562 * 21 20 19 23 23 N 1.31810 * 125.64380 * 175.46108 * 13 11 2 24 24 H 1.08999 * 109.46821 * 264.99904 * 1 2 3 25 25 H 1.09006 * 109.47221 * 24.99350 * 1 2 3 26 26 H 1.08995 * 109.47673 * 145.00098 * 1 2 3 27 27 H 0.96999 * 119.99908 * 179.97438 * 6 5 3 28 28 H 1.08000 * 125.84452 * 179.97438 * 15 14 13 29 29 H 1.07995 * 120.03156 * 359.97438 * 18 17 16 30 30 H 1.07995 * 119.96614 * 180.02562 * 19 18 17 31 31 H 1.08002 * 119.93017 * 179.72416 * 20 19 18 32 32 H 1.08002 * 119.96721 * 180.02562 * 21 20 19 33 33 H 1.07992 * 120.03623 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 3.0829 1.2699 -0.5362 5 6 1.6425 2.2807 0.6905 6 7 0.5617 2.1509 1.4258 7 14 2.4987 3.9368 0.5726 8 1 2.5193 4.3836 -0.8433 9 1 1.7655 4.9326 1.3948 10 1 3.8913 3.8107 1.0724 11 6 2.1389 -1.1672 -0.0005 12 8 1.5350 -2.2178 -0.1016 13 6 3.6109 -1.1701 0.1215 14 7 4.3959 -0.0818 0.1457 15 6 5.6452 -0.4397 0.2620 16 7 5.6969 -1.7883 0.3170 17 6 6.8471 -2.5790 0.4409 18 6 6.7388 -3.9627 0.4836 19 6 7.8742 -4.7394 0.6063 20 6 9.1179 -4.1404 0.6872 21 6 9.2291 -2.7626 0.6450 22 6 8.0974 -1.9805 0.5224 23 7 4.3715 -2.2422 0.2179 24 1 -0.3633 -0.0896 1.0238 25 1 -0.3634 0.9315 -0.4342 26 1 -0.3634 -0.8418 -0.5894 27 1 0.2084 2.9149 1.9078 28 1 6.4928 0.2281 0.3067 29 1 5.7676 -4.4310 0.4217 30 1 7.7907 -5.8156 0.6392 31 1 10.0040 -4.7496 0.7876 32 1 10.2019 -2.2977 0.7080 33 1 8.1848 -0.9046 0.4890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035958253.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:54 Heat of formation + Delta-G solvation = 90.151228 kcal Electronic energy + Delta-G solvation = -19899.226752 eV Core-core repulsion = 16734.318937 eV Total energy + Delta-G solvation = -3164.907815 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.32025 -40.42177 -39.86098 -36.84560 -35.16508 -33.47807 -32.66301 -31.78227 -30.62139 -28.59813 -26.96381 -24.91721 -24.53476 -22.83591 -22.23219 -21.00119 -19.73070 -18.79563 -17.73482 -17.14931 -17.03767 -16.69936 -16.22457 -15.78596 -15.76319 -15.70117 -15.05234 -14.66656 -14.38508 -14.08372 -13.63281 -13.44709 -13.18770 -13.07424 -12.69134 -12.61552 -12.44344 -12.06682 -11.99306 -11.76288 -11.16434 -11.04292 -11.01409 -10.63765 -10.01601 -9.66532 -9.34438 -8.30268 -5.99900 -0.39647 0.34098 0.66812 1.10133 1.36288 1.51287 1.60158 1.63420 2.29651 2.47234 2.59576 2.79335 3.16698 3.28341 3.58823 3.84526 3.98396 4.05207 4.25242 4.42520 4.47949 4.61942 4.69352 4.87991 4.94828 5.01958 5.07688 5.19173 5.38476 5.40076 5.51799 5.61402 5.76585 5.81671 6.08674 6.52346 6.82549 7.11352 7.41480 7.80072 8.75063 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.005003 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.633612 B = 5595.503527 C = 6568.606055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.416 5.416 3 C -0.334 4.334 4 H 0.128 0.872 5 C -0.004 4.004 6 N -0.902 5.902 7 Si 1.000 3.000 8 H -0.263 1.263 9 H -0.284 1.284 10 H -0.260 1.260 11 C 0.508 3.492 12 O -0.627 6.627 13 C 0.211 3.789 14 N -0.504 5.504 15 C 0.251 3.749 16 N -0.334 5.334 17 C 0.118 3.882 18 C -0.143 4.143 19 C -0.100 4.100 20 C -0.118 4.118 21 C -0.088 4.088 22 C -0.130 4.130 23 N -0.302 5.302 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.273 0.727 28 H 0.278 0.722 29 H 0.108 0.892 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.173 0.827 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.916 -3.721 -0.807 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.131 5.131 3 C -0.462 4.462 4 H 0.145 0.855 5 C -0.206 4.206 6 N -0.540 5.540 7 Si 0.822 3.178 8 H -0.188 1.188 9 H -0.210 1.210 10 H -0.184 1.184 11 C 0.295 3.705 12 O -0.515 6.515 13 C -0.071 4.071 14 N -0.230 5.230 15 C -0.042 4.042 16 N -0.120 5.120 17 C 0.026 3.974 18 C -0.163 4.163 19 C -0.119 4.119 20 C -0.136 4.136 21 C -0.106 4.106 22 C -0.151 4.151 23 N -0.133 5.133 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.293 0.707 29 H 0.126 0.874 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.190 0.810 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 19.991 -4.473 -0.769 20.500 hybrid contribution -0.423 0.602 0.227 0.770 sum 19.568 -3.872 -0.543 19.955 Atomic orbital electron populations 1.21282 0.79519 1.00122 1.00359 1.43659 1.06386 1.04921 1.58170 1.20627 1.07932 0.86256 1.31420 0.85463 1.26505 0.96629 1.04009 0.93475 1.70062 1.22640 1.32949 1.28376 0.84890 0.78601 0.75566 0.78720 1.18757 1.20977 1.18392 1.16955 0.83655 0.84273 0.85648 1.90601 1.68919 1.32460 1.59500 1.23744 0.96155 0.86577 1.00631 1.71131 1.00629 1.29110 1.22141 1.27494 0.98133 0.83560 0.95061 1.48211 1.04398 1.06760 1.52603 1.18168 0.83404 0.90960 1.04847 1.21062 1.00562 0.91909 1.02783 1.21353 0.91464 1.01019 0.98029 1.21722 0.97958 0.95631 0.98328 1.21482 0.98705 0.93639 0.96751 1.21247 0.88918 1.02425 1.02509 1.78403 0.87923 1.21378 1.25582 0.93899 0.91017 0.93707 0.91738 0.70667 0.87413 0.83262 0.81919 0.80992 0.82212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.82 8.71 127.77 1.11 7.93 16 2 N -0.42 -23.41 2.97 -662.36 -1.97 -25.38 16 3 C -0.33 -17.98 8.08 84.10 0.68 -17.30 16 4 H 0.13 6.66 5.68 -2.91 -0.02 6.65 16 5 C 0.00 -0.19 5.18 84.96 0.44 0.25 16 6 N -0.90 -48.94 11.15 21.68 0.24 -48.70 16 7 Si 1.00 40.25 29.56 68.60 2.03 42.28 16 8 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 9 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 11 C 0.51 29.27 7.63 86.75 0.66 29.93 16 12 O -0.63 -38.62 16.71 -4.03 -0.07 -38.69 16 13 C 0.21 10.77 7.69 137.09 1.05 11.82 16 14 N -0.50 -22.23 7.83 -193.12 -1.51 -23.74 16 15 C 0.25 8.08 11.96 180.26 2.16 10.24 16 16 N -0.33 -11.79 3.82 -191.28 -0.73 -12.52 16 17 C 0.12 3.19 6.70 38.11 0.26 3.45 16 18 C -0.14 -3.84 9.68 22.39 0.22 -3.62 16 19 C -0.10 -1.79 10.04 22.25 0.22 -1.57 16 20 C -0.12 -1.43 10.04 22.29 0.22 -1.21 16 21 C -0.09 -1.01 10.04 22.25 0.22 -0.78 16 22 C -0.13 -2.21 9.47 22.39 0.21 -2.00 16 23 N -0.30 -14.23 12.06 -52.60 -0.63 -14.86 16 24 H 0.04 2.33 7.73 -2.39 -0.02 2.31 16 25 H 0.07 3.65 7.30 -2.38 -0.02 3.63 16 26 H 0.04 2.24 7.50 -2.39 -0.02 2.22 16 27 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 28 H 0.28 4.83 7.09 -2.91 -0.02 4.81 16 29 H 0.11 3.49 7.73 -2.91 -0.02 3.47 16 30 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 32 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.16 1.70 6.80 -2.91 -0.02 1.68 16 Total: -1.00 -78.29 292.95 5.97 -72.32 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.15 Total: 12.15 kcal Atomic # 6 Polarization: 29.68 SS G_CDS: 7.46 Total: 37.14 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -4.60 Total: -125.20 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.07 Total: -38.69 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -78.29 5.97 -72.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035958253.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.476 kcal (2) G-P(sol) polarization free energy of solvation -78.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds