Wall clock time and date at job start Mon Mar 30 2020 00:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86803 * 120.00368 * 2 1 4 4 H 1.48502 * 109.46717 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47018 * 119.99564 * 3 2 1 6 6 H 1.48498 * 109.47180 * 239.99781 * 3 2 1 7 7 C 1.39016 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00089 * 198.80533 * 7 2 1 9 9 N 1.36905 * 119.99848 * 18.80659 * 7 2 1 10 10 C 1.34779 * 120.00374 * 44.15226 * 9 7 2 11 11 O 1.21636 * 119.99771 * 355.17986 * 10 9 7 12 12 C 1.47457 * 120.00231 * 175.18563 * 10 9 7 13 13 C 1.36588 * 125.93301 * 174.09482 * 12 10 9 14 14 N 1.36189 * 107.00568 * 179.89582 * 13 12 10 15 15 C 1.36673 * 132.44359 * 180.09072 * 14 13 12 16 16 C 1.35486 * 119.10576 * 180.29531 * 15 14 13 17 17 C 1.40290 * 119.35807 * 359.97438 * 16 15 14 18 18 N 1.31154 * 120.40899 * 0.02562 * 17 16 15 19 19 C 1.34275 * 120.95052 * 359.97438 * 18 17 16 20 20 N 1.32227 * 131.63868 * 179.97438 * 19 18 17 21 21 C 1.46503 * 119.99855 * 224.15266 * 9 7 2 22 22 C 1.52999 * 117.50014 * 3.81113 * 21 9 7 23 23 C 1.52997 * 117.50151 * 295.14968 * 21 9 7 24 24 H 0.97004 * 119.99365 * 354.97287 * 1 2 3 25 25 H 1.08003 * 126.49430 * 0.02562 * 13 12 10 26 26 H 1.08006 * 120.44423 * 0.27333 * 15 14 13 27 27 H 1.08000 * 120.32072 * 179.97438 * 16 15 14 28 28 H 1.08000 * 119.79428 * 180.02562 * 17 16 15 29 29 H 1.09002 * 115.54799 * 149.47617 * 21 9 7 30 30 H 1.09002 * 117.49709 * 359.97438 * 22 21 9 31 31 H 1.08993 * 117.50245 * 145.01950 * 22 21 9 32 32 H 1.08997 * 117.50192 * 214.98344 * 23 21 9 33 33 H 1.09001 * 117.49615 * 359.97388 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 1.2830 2.7464 -0.0006 5 1 3.1017 1.6963 1.2126 6 1 3.1018 1.6963 -1.2125 7 6 2.0089 -1.2039 0.0005 8 1 3.0457 -1.2288 0.3020 9 7 1.3791 -2.3581 -0.3812 10 6 0.5902 -2.3656 -1.4739 11 8 0.3674 -1.3292 -2.0703 12 6 -0.0028 -3.6303 -1.9464 13 6 -0.9044 -3.7619 -2.9640 14 7 -1.1894 -5.0891 -3.0745 15 6 -2.0128 -5.7891 -3.9111 16 6 -2.0979 -7.1348 -3.7780 17 6 -1.3403 -7.7772 -2.7873 18 7 -0.5570 -7.0836 -1.9964 19 6 -0.4617 -5.7495 -2.1155 20 7 0.2463 -4.8560 -1.4457 21 6 1.5627 -3.5849 0.3982 22 6 2.3975 -3.4912 1.6770 23 6 2.9666 -4.1915 0.4406 24 1 -0.4849 0.8369 0.0736 25 1 -1.3122 -2.9648 -3.5680 26 1 -2.5882 -5.2765 -4.6678 27 1 -2.7427 -7.7073 -4.4283 28 1 -1.4024 -8.8496 -2.6753 29 1 0.7170 -4.2726 0.3985 30 1 2.8104 -2.5169 1.9382 31 1 2.1013 -4.1176 2.5184 32 1 3.0447 -5.2783 0.4690 33 1 3.7536 -3.6781 -0.1118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894769.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:24 Heat of formation + Delta-G solvation = 110.181421 kcal Electronic energy + Delta-G solvation = -20556.770730 eV Core-core repulsion = 17392.731489 eV Total energy + Delta-G solvation = -3164.039241 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.95453 -40.43055 -38.87223 -37.69754 -35.57455 -34.80381 -32.94884 -31.85064 -30.28754 -27.64900 -25.71537 -24.21602 -23.96993 -23.06988 -22.51512 -21.16208 -19.57067 -18.48047 -18.06631 -17.80850 -17.33473 -16.87182 -16.47003 -16.05301 -15.54734 -15.22293 -15.00510 -14.96723 -14.53410 -13.86301 -13.66780 -13.39176 -13.11483 -12.91544 -12.76022 -12.61127 -12.25047 -12.11688 -11.73187 -11.54376 -11.11112 -10.81717 -10.65907 -10.15394 -10.02231 -9.28153 -8.99479 -8.21061 -6.01588 -0.38742 0.09068 1.21858 1.36799 1.40233 1.48571 1.51880 2.29797 2.53875 2.55825 2.81797 3.03309 3.12060 3.43302 3.51377 3.63110 3.80517 4.10186 4.22577 4.26448 4.37874 4.46045 4.60110 4.66052 4.75946 4.86874 5.01375 5.18765 5.27982 5.43263 5.45442 5.51455 5.64967 6.18038 6.51574 6.85632 6.97008 7.15892 7.59965 8.26230 8.86690 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027901 B = 0.005878 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.322439 B = 4762.678955 C = 5577.081316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.021 3.979 3 Si 0.981 3.019 4 H -0.282 1.282 5 H -0.254 1.254 6 H -0.278 1.278 7 C -0.364 4.364 8 H 0.085 0.915 9 N -0.417 5.417 10 C 0.527 3.473 11 O -0.575 6.575 12 C 0.017 3.983 13 C -0.034 4.034 14 N -0.403 5.403 15 C 0.096 3.904 16 C -0.188 4.188 17 C 0.182 3.818 18 N -0.481 5.481 19 C 0.355 3.645 20 N -0.478 5.478 21 C 0.061 3.939 22 C -0.172 4.172 23 C -0.174 4.174 24 H 0.263 0.737 25 H 0.207 0.793 26 H 0.213 0.787 27 H 0.221 0.779 28 H 0.229 0.771 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 -16.678 -8.083 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.208 1.208 5 H -0.179 1.179 6 H -0.204 1.204 7 C -0.491 4.491 8 H 0.102 0.898 9 N -0.134 5.134 10 C 0.315 3.685 11 O -0.456 6.456 12 C -0.115 4.115 13 C -0.169 4.169 14 N -0.080 5.080 15 C -0.034 4.034 16 C -0.210 4.210 17 C -0.004 4.004 18 N -0.195 5.195 19 C 0.005 3.995 20 N -0.204 5.204 21 C -0.044 4.044 22 C -0.210 4.210 23 C -0.212 4.212 24 H 0.073 0.927 25 H 0.224 0.776 26 H 0.230 0.770 27 H 0.238 0.762 28 H 0.245 0.755 29 H 0.139 0.861 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.534 -16.315 -7.042 18.612 hybrid contribution -0.611 1.693 -1.024 2.071 sum -6.145 -14.623 -8.066 17.795 Atomic orbital electron populations 1.69985 1.08355 1.28107 1.43293 1.26214 0.95587 1.02922 0.93882 0.85216 0.78061 0.77227 0.79003 1.20783 1.17865 1.20395 1.19227 0.95342 0.84972 1.49609 0.89765 1.42788 1.42168 1.08039 1.20402 1.17135 0.83829 0.85593 0.81900 1.90570 1.63048 1.33202 1.58805 1.21101 1.00259 0.92322 0.97850 1.22581 1.04847 0.84579 1.04914 1.43918 1.30668 1.07863 1.25567 1.23247 0.92026 0.94203 0.93891 1.22450 1.03803 0.92379 1.02339 1.24378 0.86293 1.02660 0.87087 1.68066 1.22931 1.00099 1.28363 1.22391 0.95524 0.91211 0.90337 1.70939 1.24652 0.98195 1.26600 1.22134 0.95654 0.89612 0.97030 1.23200 1.03914 1.02128 0.91728 1.23084 0.96931 0.99727 1.01467 0.92748 0.77650 0.76995 0.76192 0.75484 0.86054 0.89272 0.87002 0.87438 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -54.69 11.60 21.68 0.25 -54.44 16 2 C 0.02 1.26 4.37 84.95 0.37 1.63 16 3 Si 0.98 46.91 29.60 68.60 2.03 48.94 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.25 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 7 C -0.36 -21.64 7.93 84.09 0.67 -20.98 16 8 H 0.08 4.79 7.28 -2.91 -0.02 4.77 16 9 N -0.42 -24.02 2.83 -616.76 -1.75 -25.77 16 10 C 0.53 30.97 7.06 86.67 0.61 31.59 16 11 O -0.57 -37.05 14.38 -4.14 -0.06 -37.11 16 12 C 0.02 0.85 6.65 40.74 0.27 1.12 16 13 C -0.03 -1.33 11.48 83.63 0.96 -0.37 16 14 N -0.40 -12.37 2.93 -356.70 -1.05 -13.41 16 15 C 0.10 1.55 11.05 83.30 0.92 2.47 16 16 C -0.19 -1.75 10.06 22.13 0.22 -1.53 16 17 C 0.18 2.69 11.27 85.29 0.96 3.65 16 18 N -0.48 -14.02 10.48 -197.16 -2.07 -16.09 16 19 C 0.35 13.10 8.90 261.34 2.33 15.43 16 20 N -0.48 -21.78 7.92 -188.83 -1.50 -23.28 16 21 C 0.06 2.98 5.16 44.99 0.23 3.21 16 22 C -0.17 -7.21 9.80 30.62 0.30 -6.91 16 23 C -0.17 -7.20 10.35 30.62 0.32 -6.88 16 24 H 0.26 15.82 8.32 -92.71 -0.77 15.05 16 25 H 0.21 7.09 8.06 -2.91 -0.02 7.07 16 26 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 27 H 0.22 -0.50 8.06 -2.91 -0.02 -0.52 16 28 H 0.23 0.91 8.06 -2.91 -0.02 0.88 16 29 H 0.12 6.11 5.82 -2.39 -0.01 6.10 16 30 H 0.09 3.99 6.74 -2.39 -0.02 3.97 16 31 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 32 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 33 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -89.59 289.95 5.17 -84.42 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.15 Total: 14.30 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 8.16 Total: 22.44 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -6.10 Total: -132.98 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -0.06 Total: -37.11 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -89.59 5.17 -84.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894769.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.599 kcal (2) G-P(sol) polarization free energy of solvation -89.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds