Wall clock time and date at job start Mon Mar 30 2020 01:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30468 * 125.84558 * 2 1 4 4 C 1.34218 * 109.83067 * 180.02562 * 3 2 1 5 5 C 1.47703 * 125.65024 * 180.02562 * 4 3 2 6 6 O 1.21600 * 119.99860 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99923 * 0.02562 * 5 4 3 8 8 C 1.36868 * 119.99842 * 179.97438 * 7 5 4 9 9 H 1.07997 * 120.00368 * 0.02562 * 8 7 5 10 10 C 1.39046 * 119.99629 * 179.97438 * 8 7 5 11 11 N 1.31370 * 120.00213 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99833 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47001 * 60.00348 * 12 10 8 14 14 H 1.48504 * 109.47360 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47196 * 300.00603 * 12 10 8 16 16 N 1.31812 * 108.70184 * 359.74735 * 4 3 2 17 17 N 1.35069 * 125.84063 * 179.97438 * 2 1 3 18 18 C 1.40128 * 126.76000 * 359.96186 * 17 2 1 19 19 C 1.38853 * 120.06610 * 144.99978 * 18 17 2 20 20 C 1.38111 * 119.93168 * 179.97438 * 19 18 17 21 21 C 1.38285 * 120.06839 * 359.97438 * 20 19 18 22 22 C 1.38281 * 120.13633 * 0.02562 * 21 20 19 23 23 C 1.38122 * 120.06846 * 0.02562 * 22 21 20 24 24 H 1.08995 * 109.47218 * 270.00607 * 1 2 3 25 25 H 1.09007 * 109.47038 * 30.00151 * 1 2 3 26 26 H 1.08999 * 109.47136 * 149.99859 * 1 2 3 27 27 H 0.97000 * 119.99993 * 0.02562 * 7 5 4 28 28 H 0.97002 * 119.99852 * 179.97438 * 11 10 8 29 29 H 1.08000 * 120.03651 * 0.02562 * 19 18 17 30 30 H 1.08000 * 119.96912 * 180.02562 * 20 19 18 31 31 H 1.07994 * 119.93477 * 179.74935 * 21 20 19 32 32 H 1.08006 * 119.97112 * 179.97438 * 22 21 20 33 33 H 1.08003 * 120.03286 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2711 1.0576 0.0000 4 6 3.5611 0.6873 -0.0006 5 6 4.7197 1.6034 -0.0002 6 8 5.8498 1.1545 -0.0013 7 7 4.5243 2.9369 0.0013 8 6 5.5979 3.7858 0.0021 9 1 6.6016 3.3872 0.0012 10 6 5.3963 5.1616 0.0031 11 7 4.1754 5.6466 0.0038 12 14 6.8615 6.3203 0.0036 13 1 7.6837 6.0791 -1.2093 14 1 6.3814 7.7255 0.0053 15 1 7.6844 6.0773 1.2157 16 7 3.6229 -0.6294 0.0046 17 7 2.2979 -1.0949 0.0005 18 6 1.8789 -2.4321 0.0018 19 6 2.6098 -3.3909 -0.6870 20 6 2.1946 -4.7081 -0.6834 21 6 1.0525 -5.0726 0.0058 22 6 0.3224 -4.1201 0.6927 23 6 0.7319 -2.8010 0.6920 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 3.6229 3.2950 0.0025 28 1 4.0348 6.6063 0.0048 29 1 3.5026 -3.1070 -1.2244 30 1 2.7629 -5.4544 -1.2187 31 1 0.7275 -6.1025 0.0038 32 1 -0.5695 -4.4077 1.2298 33 1 0.1615 -2.0576 1.2291 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068325428.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:54 Heat of formation + Delta-G solvation = 83.339028 kcal Electronic energy + Delta-G solvation = -19501.901813 eV Core-core repulsion = 16336.698598 eV Total energy + Delta-G solvation = -3165.203215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.03169 -39.32681 -37.86173 -34.16568 -34.03067 -32.62942 -31.35704 -31.12738 -29.59361 -28.00234 -25.82154 -23.62941 -23.13769 -21.93793 -20.41520 -19.25446 -18.03899 -17.94972 -16.63959 -16.04089 -15.86805 -14.93619 -14.79896 -14.49735 -14.23204 -13.82144 -13.70416 -13.57831 -13.27728 -12.92304 -12.65442 -12.54970 -12.03243 -11.74657 -11.63729 -11.26642 -11.11530 -10.48537 -10.40779 -10.32575 -9.81771 -9.62029 -9.33087 -9.28711 -8.72838 -8.53940 -8.08757 -6.55167 -3.89993 0.67608 1.04626 1.84059 2.30910 2.69005 3.22354 3.23246 3.26948 3.45346 3.99900 4.16664 4.31080 4.42560 4.59649 4.63647 4.78801 4.86162 5.06481 5.15486 5.26399 5.29919 5.35594 5.50709 5.64584 5.71692 5.86457 6.03223 6.16642 6.21397 6.45461 6.52578 6.69326 7.11283 7.42672 7.89770 8.21047 8.54069 9.03176 9.41756 9.94834 10.60534 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042739 B = 0.003784 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.980074 B = 7398.176932 C = 7958.572490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.275 3.725 3 N -0.511 5.511 4 C 0.229 3.771 5 C 0.503 3.497 6 O -0.578 6.578 7 N -0.514 5.514 8 C -0.299 4.299 9 H 0.110 0.890 10 C 0.028 3.972 11 N -0.878 5.878 12 Si 0.939 3.061 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.270 1.270 16 N -0.270 5.270 17 N -0.347 5.347 18 C 0.157 3.843 19 C -0.107 4.107 20 C -0.101 4.101 21 C -0.124 4.124 22 C -0.100 4.100 23 C -0.131 4.131 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.405 0.595 28 H 0.278 0.722 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.105 -16.107 -0.083 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.000 4.000 3 N -0.240 5.240 4 C -0.054 4.054 5 C 0.286 3.714 6 O -0.462 6.462 7 N -0.149 5.149 8 C -0.429 4.429 9 H 0.128 0.872 10 C -0.177 4.177 11 N -0.517 5.517 12 Si 0.765 3.235 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.195 1.195 16 N -0.097 5.097 17 N -0.134 5.134 18 C 0.064 3.936 19 C -0.127 4.127 20 C -0.119 4.119 21 C -0.143 4.143 22 C -0.119 4.119 23 C -0.152 4.152 24 H 0.110 0.890 25 H 0.119 0.881 26 H 0.102 0.898 27 H 0.241 0.759 28 H 0.088 0.912 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.830 -16.217 -0.084 20.074 hybrid contribution -0.084 0.668 0.028 0.674 sum -11.914 -15.549 -0.055 19.589 Atomic orbital electron populations 1.20533 0.83748 1.05095 1.04329 1.24527 0.96686 0.81997 0.96753 1.70662 1.01373 1.28324 1.23619 1.24735 0.92323 0.90506 0.97807 1.15917 0.84738 0.81943 0.88820 1.90659 1.21740 1.75952 1.57857 1.41669 1.10831 1.03132 1.59287 1.19837 0.88838 0.86675 1.47574 0.87196 1.25455 0.98216 0.97679 0.96336 1.69634 1.20383 1.14783 1.46917 0.85792 0.80206 0.78131 0.79413 1.19503 1.20694 1.19508 1.78670 0.93711 1.11630 1.25672 1.47915 1.05061 1.04813 1.55621 1.17535 0.96006 0.80878 0.99182 1.21142 1.00402 0.92551 0.98638 1.21098 0.96626 0.95258 0.98950 1.21257 0.95441 0.99819 0.97781 1.20993 0.99997 0.91793 0.99106 1.21119 0.96772 0.97567 0.99733 0.88957 0.88077 0.89816 0.75946 0.91218 0.84660 0.85038 0.85424 0.84953 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 8.69 36.01 0.31 -0.49 16 2 C 0.28 4.62 7.81 -155.42 -1.21 3.41 16 3 N -0.51 -10.83 10.85 -8.57 -0.09 -10.92 16 4 C 0.23 5.53 7.94 -156.46 -1.24 4.29 16 5 C 0.50 13.88 7.78 -12.40 -0.10 13.79 16 6 O -0.58 -17.54 16.65 5.28 0.09 -17.45 16 7 N -0.51 -14.26 5.28 -11.88 -0.06 -14.32 16 8 C -0.30 -8.52 9.68 -15.00 -0.15 -8.66 16 9 H 0.11 3.21 7.15 -52.49 -0.38 2.83 16 10 C 0.03 0.75 5.50 -17.45 -0.10 0.66 16 11 N -0.88 -23.89 13.05 55.50 0.72 -23.17 16 12 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 N -0.27 -6.08 12.51 32.02 0.40 -5.68 16 17 N -0.35 -6.14 3.75 -8.04 -0.03 -6.17 16 18 C 0.16 2.17 6.30 -83.61 -0.53 1.64 16 19 C -0.11 -1.37 9.80 -39.40 -0.39 -1.76 16 20 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 21 C -0.12 -0.96 10.04 -39.55 -0.40 -1.36 16 22 C -0.10 -0.79 10.04 -39.61 -0.40 -1.19 16 23 C -0.13 -1.34 8.32 -39.40 -0.33 -1.67 16 24 H 0.09 0.74 7.77 -51.93 -0.40 0.34 16 25 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 26 H 0.08 0.67 6.92 -51.93 -0.36 0.31 16 27 H 0.41 11.00 7.58 -40.82 -0.31 10.69 16 28 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.14 1.90 8.06 -52.49 -0.42 1.47 16 30 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 32 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.13 1.14 6.15 -52.48 -0.32 0.82 16 LS Contribution 299.14 15.07 4.51 4.51 Total: -1.00 -34.70 299.14 -7.42 -42.12 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -3.02 Total: 8.06 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -4.91 Total: 7.33 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.94 Total: -60.26 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.09 Total: -17.45 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.70 -7.42 -42.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068325428.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.459 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds