Wall clock time and date at job start Mon Mar 30 2020 01:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30468 * 125.84558 * 2 1 4 4 C 1.34218 * 109.83067 * 180.02562 * 3 2 1 5 5 C 1.47703 * 125.65024 * 180.02562 * 4 3 2 6 6 O 1.21600 * 119.99860 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99923 * 0.02562 * 5 4 3 8 8 C 1.36868 * 119.99842 * 179.97438 * 7 5 4 9 9 H 1.07997 * 120.00368 * 0.02562 * 8 7 5 10 10 C 1.39046 * 119.99629 * 179.97438 * 8 7 5 11 11 N 1.31370 * 120.00213 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99833 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47001 * 60.00348 * 12 10 8 14 14 H 1.48504 * 109.47360 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47196 * 300.00603 * 12 10 8 16 16 N 1.31812 * 108.70184 * 359.74735 * 4 3 2 17 17 N 1.35069 * 125.84063 * 179.97438 * 2 1 3 18 18 C 1.40128 * 126.76000 * 359.96186 * 17 2 1 19 19 C 1.38853 * 120.06610 * 144.99978 * 18 17 2 20 20 C 1.38111 * 119.93168 * 179.97438 * 19 18 17 21 21 C 1.38285 * 120.06839 * 359.97438 * 20 19 18 22 22 C 1.38281 * 120.13633 * 0.02562 * 21 20 19 23 23 C 1.38122 * 120.06846 * 0.02562 * 22 21 20 24 24 H 1.08995 * 109.47218 * 270.00607 * 1 2 3 25 25 H 1.09007 * 109.47038 * 30.00151 * 1 2 3 26 26 H 1.08999 * 109.47136 * 149.99859 * 1 2 3 27 27 H 0.97000 * 119.99993 * 0.02562 * 7 5 4 28 28 H 0.97002 * 119.99852 * 179.97438 * 11 10 8 29 29 H 1.08000 * 120.03651 * 0.02562 * 19 18 17 30 30 H 1.08000 * 119.96912 * 180.02562 * 20 19 18 31 31 H 1.07994 * 119.93477 * 179.74935 * 21 20 19 32 32 H 1.08006 * 119.97112 * 179.97438 * 22 21 20 33 33 H 1.08003 * 120.03286 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2711 1.0576 0.0000 4 6 3.5611 0.6873 -0.0006 5 6 4.7197 1.6034 -0.0002 6 8 5.8498 1.1545 -0.0013 7 7 4.5243 2.9369 0.0013 8 6 5.5979 3.7858 0.0021 9 1 6.6016 3.3872 0.0012 10 6 5.3963 5.1616 0.0031 11 7 4.1754 5.6466 0.0038 12 14 6.8615 6.3203 0.0036 13 1 7.6837 6.0791 -1.2093 14 1 6.3814 7.7255 0.0053 15 1 7.6844 6.0773 1.2157 16 7 3.6229 -0.6294 0.0046 17 7 2.2979 -1.0949 0.0005 18 6 1.8789 -2.4321 0.0018 19 6 2.6098 -3.3909 -0.6870 20 6 2.1946 -4.7081 -0.6834 21 6 1.0525 -5.0726 0.0058 22 6 0.3224 -4.1201 0.6927 23 6 0.7319 -2.8010 0.6920 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 3.6229 3.2950 0.0025 28 1 4.0348 6.6063 0.0048 29 1 3.5026 -3.1070 -1.2244 30 1 2.7629 -5.4544 -1.2187 31 1 0.7275 -6.1025 0.0038 32 1 -0.5695 -4.4077 1.2298 33 1 0.1615 -2.0576 1.2291 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068325428.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:53 Heat of formation + Delta-G solvation = 59.248168 kcal Electronic energy + Delta-G solvation = -19502.946471 eV Core-core repulsion = 16336.698598 eV Total energy + Delta-G solvation = -3166.247873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.49569 -40.35545 -39.82139 -36.24165 -35.33216 -33.91486 -33.46091 -31.95929 -30.69891 -29.20960 -27.76314 -25.23965 -24.01328 -23.16488 -21.61782 -21.14692 -20.09627 -19.23587 -17.90897 -17.41384 -17.16673 -16.87535 -15.99649 -15.89723 -15.44278 -15.38697 -15.11773 -14.81671 -14.54444 -14.15711 -13.80399 -13.63131 -13.53448 -13.13121 -12.97991 -12.58689 -12.55476 -12.16650 -12.11135 -11.69758 -11.59024 -11.39110 -10.92678 -10.85741 -10.23091 -10.04893 -9.56026 -8.62126 -6.10176 -0.40326 0.29486 0.46494 1.01157 1.13526 1.41695 1.49944 1.54845 2.20685 2.31578 2.56877 2.68575 3.05328 3.14682 3.54120 3.77107 3.86573 3.99965 4.19538 4.33490 4.38791 4.51111 4.58529 4.60154 4.78253 4.94773 5.01346 5.03984 5.27341 5.32175 5.35186 5.46788 5.71291 5.77814 6.02410 6.32395 6.72260 6.90175 7.28139 7.81130 8.54297 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042739 B = 0.003784 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.980074 B = 7398.176932 C = 7958.572490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.283 3.717 3 N -0.542 5.542 4 C 0.203 3.797 5 C 0.496 3.504 6 O -0.620 6.620 7 N -0.515 5.515 8 C -0.345 4.345 9 H 0.092 0.908 10 C -0.003 4.003 11 N -0.898 5.898 12 Si 1.010 2.990 13 H -0.266 1.266 14 H -0.262 1.262 15 H -0.266 1.266 16 N -0.300 5.300 17 N -0.335 5.335 18 C 0.106 3.894 19 C -0.132 4.132 20 C -0.102 4.102 21 C -0.107 4.107 22 C -0.089 4.089 23 C -0.123 4.123 24 H 0.124 0.876 25 H 0.109 0.891 26 H 0.113 0.887 27 H 0.405 0.595 28 H 0.288 0.712 29 H 0.105 0.895 30 H 0.152 0.848 31 H 0.167 0.833 32 H 0.175 0.825 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.176 -17.837 0.558 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.009 3.991 3 N -0.272 5.272 4 C -0.080 4.080 5 C 0.280 3.720 6 O -0.507 6.507 7 N -0.149 5.149 8 C -0.474 4.474 9 H 0.110 0.890 10 C -0.207 4.207 11 N -0.536 5.536 12 Si 0.830 3.170 13 H -0.191 1.191 14 H -0.186 1.186 15 H -0.191 1.191 16 N -0.129 5.129 17 N -0.121 5.121 18 C 0.015 3.985 19 C -0.152 4.152 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.107 4.107 23 C -0.144 4.144 24 H 0.142 0.858 25 H 0.128 0.872 26 H 0.131 0.869 27 H 0.241 0.759 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.170 0.830 31 H 0.185 0.815 32 H 0.192 0.808 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.963 -17.973 0.554 23.393 hybrid contribution 0.661 0.900 -0.169 1.130 sum -14.302 -17.073 0.385 22.275 Atomic orbital electron populations 1.20926 0.78674 1.06925 1.06857 1.25689 0.98848 0.80521 0.94029 1.70565 1.00359 1.30636 1.25648 1.23927 0.92663 0.90546 1.00855 1.16345 0.85446 0.82273 0.87911 1.90586 1.23814 1.76802 1.59514 1.41665 1.10634 1.03314 1.59317 1.19933 0.88496 0.87965 1.51054 0.89019 1.26411 1.01460 0.98284 0.94512 1.69695 1.22116 1.15828 1.45996 0.84768 0.76424 0.76297 0.79469 1.19104 1.18603 1.19087 1.78481 0.97658 1.11078 1.25681 1.48025 1.03235 1.06760 1.54085 1.18077 0.98528 0.79166 1.02694 1.21144 1.00028 0.94370 0.99663 1.21383 0.97586 0.93874 0.99169 1.21782 0.93691 1.01769 0.95230 1.21523 1.00800 0.90338 0.98083 1.21423 0.95054 0.99337 0.98546 0.85763 0.87240 0.86900 0.75947 0.90219 0.87695 0.82982 0.81527 0.80752 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 8.69 71.24 0.62 -0.70 16 2 C 0.28 9.45 7.81 138.13 1.08 10.53 16 3 N -0.54 -23.88 10.85 -181.02 -1.96 -25.84 16 4 C 0.20 10.45 7.94 137.09 1.09 11.54 16 5 C 0.50 29.46 7.78 86.75 0.67 30.14 16 6 O -0.62 -40.58 16.65 -4.03 -0.07 -40.64 16 7 N -0.52 -30.43 5.28 -309.75 -1.63 -32.06 16 8 C -0.34 -20.72 9.68 84.10 0.81 -19.91 16 9 H 0.09 5.72 7.15 -2.91 -0.02 5.70 16 10 C 0.00 -0.18 5.50 84.96 0.47 0.29 16 11 N -0.90 -49.46 13.05 21.68 0.28 -49.18 16 12 Si 1.01 42.73 29.55 68.60 2.03 44.75 16 13 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 14 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 15 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 16 N -0.30 -14.38 12.51 -52.59 -0.66 -15.04 16 17 N -0.33 -12.06 3.75 -179.34 -0.67 -12.73 16 18 C 0.11 2.86 6.30 38.11 0.24 3.10 16 19 C -0.13 -3.40 9.80 22.39 0.22 -3.18 16 20 C -0.10 -1.66 10.04 22.25 0.22 -1.44 16 21 C -0.11 -1.12 10.04 22.29 0.22 -0.90 16 22 C -0.09 -0.92 10.04 22.25 0.22 -0.69 16 23 C -0.12 -2.08 8.32 22.39 0.19 -1.89 16 24 H 0.12 1.47 7.77 -2.39 -0.02 1.45 16 25 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.11 1.35 6.92 -2.39 -0.02 1.34 16 27 H 0.41 23.33 7.58 -92.71 -0.70 22.63 16 28 H 0.29 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.10 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.17 0.56 8.06 -2.91 -0.02 0.53 16 32 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.15 1.91 6.15 -2.91 -0.02 1.90 16 Total: -1.00 -83.50 299.14 3.83 -79.66 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.46 Total: 24.20 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 6.06 Total: 26.89 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -4.65 Total: -134.86 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.07 Total: -40.64 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -83.50 3.83 -79.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068325428.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.912 kcal (2) G-P(sol) polarization free energy of solvation -83.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds