Wall clock time and date at job start Mon Mar 30 2020 01:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00087 * 2 1 4 4 H 1.48503 * 109.46728 * 275.47814 * 3 2 1 5 5 H 1.48499 * 109.46789 * 35.47474 * 3 2 1 6 6 H 1.48492 * 109.47119 * 155.48060 * 3 2 1 7 7 C 1.37879 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99775 * 349.01095 * 7 2 1 9 9 C 1.50698 * 120.00100 * 169.01529 * 7 2 1 10 10 C 1.52997 * 115.56335 * 320.07411 * 9 7 2 11 11 O 1.42902 * 109.47305 * 268.88748 * 10 9 7 12 12 C 1.35911 * 117.00424 * 183.03462 * 11 10 9 13 13 C 1.38793 * 119.89189 * 354.67946 * 12 11 10 14 14 C 1.38281 * 120.13957 * 179.79947 * 13 12 11 15 15 C 1.37759 * 120.22798 * 0.45661 * 14 13 12 16 16 C 1.40353 * 120.18511 * 359.78314 * 15 14 13 17 17 C 1.38674 * 119.89743 * 174.95761 * 12 11 10 18 18 C 1.50985 * 130.51395 * 359.95078 * 17 12 11 19 19 C 1.53482 * 106.30575 * 180.02562 * 18 17 12 20 20 C 1.47249 * 129.99481 * 179.97438 * 16 15 14 21 21 O 1.21256 * 125.94656 * 0.02562 * 20 16 15 22 22 C 1.52999 * 117.50074 * 105.76775 * 9 7 2 23 23 C 1.52996 * 60.00241 * 107.48568 * 22 9 7 24 24 H 0.96996 * 120.00007 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46738 * 28.88634 * 10 9 7 26 26 H 1.09003 * 109.47234 * 148.88803 * 10 9 7 27 27 H 1.08002 * 119.93031 * 0.02700 * 13 12 11 28 28 H 1.07995 * 119.88833 * 180.25748 * 14 13 12 29 29 H 1.08002 * 119.90652 * 179.80158 * 15 14 13 30 30 H 1.08993 * 110.08643 * 299.23806 * 18 17 12 31 31 H 1.09000 * 110.08466 * 60.81374 * 18 17 12 32 32 H 1.08997 * 110.27556 * 241.03615 * 19 18 17 33 33 H 1.09011 * 110.35033 * 119.00701 * 19 18 17 34 34 H 1.09001 * 117.50130 * 214.98244 * 22 9 7 35 35 H 1.09007 * 117.49814 * 359.97438 * 22 9 7 36 36 H 1.09005 * 117.50179 * 252.51059 * 23 22 9 37 37 H 1.09003 * 117.51447 * 107.48162 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3809 2.1132 -1.3937 5 1 1.5092 2.6165 0.8125 6 1 3.5997 1.4095 0.5810 7 6 2.0045 -1.1940 -0.0005 8 1 1.4794 -2.1208 0.1773 9 6 3.4908 -1.2058 -0.2492 10 6 3.9873 -0.2414 -1.3281 11 8 4.0029 -0.9078 -2.5922 12 6 4.4815 -0.2066 -3.6536 13 6 4.8227 1.1302 -3.5024 14 6 5.3140 1.8473 -4.5778 15 6 5.4588 1.2422 -5.8069 16 6 5.1126 -0.1076 -5.9741 17 6 4.6219 -0.8276 -4.8855 18 6 4.3228 -2.2456 -5.3090 19 6 4.6837 -2.3359 -6.7980 20 6 5.1777 -0.9598 -7.1732 21 8 5.5621 -0.6162 -8.2707 22 6 4.4061 -1.4546 0.9513 23 6 4.2202 -2.5433 -0.1074 24 1 -0.4850 0.8400 0.0004 25 1 3.3215 0.6200 -1.3797 26 1 4.9951 0.0926 -1.0811 27 1 4.7076 1.6104 -2.5418 28 1 5.5821 2.8862 -4.4546 29 1 5.8400 1.8081 -6.6441 30 1 4.9301 -2.9441 -4.7335 31 1 3.2643 -2.4635 -5.1663 32 1 3.8023 -2.5935 -7.3853 33 1 5.4696 -3.0751 -6.9535 34 1 5.3619 -0.9311 0.9726 35 1 3.9331 -1.6093 1.9212 36 1 3.6250 -3.4147 0.1658 37 1 5.0536 -2.7363 -0.7830 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:23 Heat of formation + Delta-G solvation = -31.758334 kcal Electronic energy + Delta-G solvation = -20557.802455 eV Core-core repulsion = 17458.855837 eV Total energy + Delta-G solvation = -3098.946618 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.83660 -40.41662 -38.88299 -37.52866 -35.93563 -34.38795 -31.22910 -30.49686 -29.03291 -27.36012 -26.79287 -23.71195 -23.08169 -22.45843 -21.18206 -20.91790 -18.75560 -18.61130 -17.63620 -17.23582 -16.84366 -16.77385 -16.33393 -16.00579 -15.83055 -15.11411 -14.93296 -14.56745 -14.50059 -14.19580 -13.82919 -13.76293 -13.21066 -13.04545 -12.85494 -12.67832 -12.28499 -12.20015 -12.14207 -12.10050 -11.67075 -11.49077 -11.22972 -10.83064 -10.61404 -10.44062 -10.01293 -9.18528 -8.37298 -6.36135 -0.52127 0.31351 1.18054 1.29150 1.30233 1.39997 2.11723 2.24776 2.64471 2.85476 2.90527 3.44745 3.51289 3.65455 3.81409 3.92791 3.95596 4.06170 4.16577 4.23219 4.23831 4.33262 4.35491 4.41383 4.64822 4.69796 4.86079 4.89908 4.98185 5.02410 5.09294 5.17966 5.18727 5.24078 5.31162 5.48881 5.61829 5.62368 6.24174 6.35784 6.41568 6.63922 7.23916 8.78953 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.022230 B = 0.005648 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.281254 B = 4956.314762 C = 5360.211726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.016 3.984 3 Si 0.935 3.065 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.228 1.228 7 C -0.487 4.487 8 H 0.034 0.966 9 C -0.035 4.035 10 C 0.095 3.905 11 O -0.309 6.309 12 C 0.109 3.891 13 C -0.190 4.190 14 C -0.091 4.091 15 C -0.098 4.098 16 C -0.174 4.174 17 C -0.090 4.090 18 C -0.075 4.075 19 C -0.158 4.158 20 C 0.414 3.586 21 O -0.477 6.477 22 C -0.177 4.177 23 C -0.159 4.159 24 H 0.267 0.733 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.132 0.868 28 H 0.163 0.837 29 H 0.146 0.854 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.723 0.588 -9.657 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.222 1.222 6 H -0.151 1.151 7 C -0.525 4.525 8 H 0.052 0.948 9 C -0.036 4.036 10 C 0.021 3.979 11 O -0.222 6.222 12 C 0.063 3.937 13 C -0.208 4.208 14 C -0.109 4.109 15 C -0.116 4.116 16 C -0.175 4.175 17 C -0.091 4.091 18 C -0.112 4.112 19 C -0.194 4.194 20 C 0.294 3.706 21 O -0.355 6.355 22 C -0.215 4.215 23 C -0.196 4.196 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.150 0.850 28 H 0.180 0.820 29 H 0.163 0.837 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.677 0.640 -10.189 17.067 hybrid contribution -0.571 1.016 0.606 1.314 sum 13.106 1.656 -9.583 16.320 Atomic orbital electron populations 1.70050 1.08308 1.28241 1.51318 1.25868 0.95359 1.02997 0.93948 0.86063 0.80911 0.78918 0.78009 1.19541 1.22239 1.15092 1.20511 0.90557 0.93383 1.48000 0.94751 1.19201 0.92394 0.97466 0.94490 1.22835 0.99286 0.94813 0.80989 1.86172 1.78423 1.41653 1.15979 1.18961 0.95795 0.91259 0.87686 1.21713 1.04021 0.93369 1.01741 1.21143 0.97487 1.01159 0.91077 1.21289 0.99026 0.93073 0.98199 1.21166 1.04480 0.95798 0.96069 1.20070 1.00258 0.98508 0.90243 1.20747 1.03706 0.91531 0.95174 1.22355 1.05305 0.95452 0.96320 1.22841 0.71726 0.90806 0.85208 1.90516 1.38699 1.80255 1.26010 1.23232 1.00472 1.03527 0.94245 1.22709 1.02308 0.92243 1.02366 0.92359 0.94254 0.90605 0.85018 0.81974 0.83655 0.87923 0.89182 0.85338 0.84632 0.87910 0.89585 0.90407 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 2 C 0.02 0.93 5.43 84.66 0.46 1.39 16 3 Si 0.93 42.36 24.34 68.60 1.67 44.03 16 4 H -0.27 -11.61 6.79 99.48 0.68 -10.94 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 6 H -0.23 -9.07 6.71 99.48 0.67 -8.41 16 7 C -0.49 -27.35 9.55 25.60 0.24 -27.10 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 9 C -0.03 -1.54 1.43 -52.93 -0.08 -1.61 16 10 C 0.09 3.80 3.47 71.98 0.25 4.05 16 11 O -0.31 -12.17 9.89 -92.55 -0.92 -13.08 16 12 C 0.11 3.68 6.68 22.51 0.15 3.83 16 13 C -0.19 -5.74 9.03 22.41 0.20 -5.54 16 14 C -0.09 -2.21 10.02 22.17 0.22 -1.99 16 15 C -0.10 -2.42 10.10 22.67 0.23 -2.19 16 16 C -0.17 -4.69 6.11 -20.11 -0.12 -4.81 16 17 C -0.09 -2.61 6.18 -19.38 -0.12 -2.73 16 18 C -0.07 -1.69 6.73 30.10 0.20 -1.49 16 19 C -0.16 -2.77 6.86 30.09 0.21 -2.56 16 20 C 0.41 10.24 7.77 28.13 0.22 10.46 16 21 O -0.48 -14.12 18.02 -2.96 -0.05 -14.17 16 22 C -0.18 -6.56 9.88 30.59 0.30 -6.26 16 23 C -0.16 -6.01 9.76 30.59 0.30 -5.71 16 24 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 25 H 0.04 1.72 2.13 -2.39 -0.01 1.71 16 26 H 0.08 2.55 7.45 -2.39 -0.02 2.53 16 27 H 0.13 3.92 6.29 -2.91 -0.02 3.90 16 28 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 29 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.14 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.10 3.15 8.03 -2.39 -0.02 3.13 16 35 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 36 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 37 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -68.83 309.20 4.68 -64.15 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.01 Total: 18.98 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 2.67 Total: -42.26 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.30 Total: -57.64 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.97 Total: -27.25 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.67 Total: 44.03 kcal Total: -68.83 4.68 -64.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.390 kcal (2) G-P(sol) polarization free energy of solvation -68.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds