Wall clock time and date at job start Mon Mar 30 2020 01:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40428 * 126.83007 * 2 1 4 4 C 1.30642 * 106.96758 * 179.97438 * 3 2 1 5 5 N 1.33297 * 109.10891 * 359.74067 * 4 3 2 6 6 C 1.31522 * 109.71871 * 0.44084 * 5 4 3 7 7 N 1.38659 * 126.06964 * 179.83571 * 6 5 4 8 8 C 1.34780 * 119.99756 * 359.68201 * 7 6 5 9 9 O 1.21600 * 119.99923 * 0.02562 * 8 7 6 10 10 C 1.47562 * 120.00344 * 180.02562 * 8 7 6 11 11 C 1.40050 * 119.90289 * 180.02562 * 10 8 7 12 12 C 1.36298 * 120.10483 * 180.25266 * 11 10 8 13 13 C 1.40902 * 119.89466 * 359.47712 * 12 11 10 14 14 C 1.41081 * 120.10051 * 180.24954 * 13 12 11 15 15 H 1.07994 * 120.00359 * 204.80775 * 14 13 12 16 16 C 1.40234 * 119.99967 * 24.81256 * 14 13 12 17 17 N 1.30647 * 119.99782 * 17.72927 * 16 14 13 18 18 Si 1.86802 * 120.00134 * 197.73032 * 16 14 13 19 19 H 1.48491 * 109.46979 * 89.99939 * 18 16 14 20 20 H 1.48502 * 109.47000 * 209.99982 * 18 16 14 21 21 H 1.48504 * 109.46784 * 329.99903 * 18 16 14 22 22 C 1.40906 * 119.79695 * 0.51918 * 13 12 11 23 23 C 1.36298 * 119.89292 * 359.73627 * 22 13 12 24 24 H 1.09000 * 109.47111 * 270.02109 * 1 2 3 25 25 H 1.09001 * 109.47233 * 30.01872 * 1 2 3 26 26 H 1.08999 * 109.47391 * 150.02665 * 1 2 3 27 27 H 1.08000 * 125.44378 * 180.02562 * 4 3 2 28 28 H 0.96996 * 120.00210 * 179.69427 * 7 6 5 29 29 H 1.08004 * 119.94464 * 359.97438 * 11 10 8 30 30 H 1.08004 * 120.04865 * 179.72341 * 12 11 10 31 31 H 0.97002 * 119.99483 * 179.97438 * 17 16 14 32 32 H 1.08005 * 120.05217 * 179.70898 * 22 13 12 33 33 H 1.08001 * 119.94274 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1240 0.0000 4 6 3.5355 0.6801 0.0006 5 7 3.5179 -0.6527 0.0066 6 6 2.2741 -1.0802 0.0005 7 7 1.8664 -2.4054 0.0007 8 6 2.7838 -3.3928 0.0013 9 8 3.9691 -3.1213 0.0020 10 6 2.3500 -4.8032 0.0010 11 6 3.3051 -5.8275 0.0021 12 6 2.9090 -7.1316 -0.0034 13 6 1.5361 -7.4486 0.0010 14 6 1.1213 -8.7970 0.0007 15 1 0.1497 -9.0631 -0.3887 16 6 1.9705 -9.7920 0.5061 17 7 2.9717 -9.4654 1.2793 18 14 1.6703 -11.5843 0.0737 19 1 2.4152 -11.9263 -1.1645 20 1 2.1389 -12.4474 1.1877 21 1 0.2181 -11.8040 -0.1455 22 6 0.5788 -6.4147 -0.0001 23 6 0.9843 -5.1134 0.0001 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5134 27 1 4.4234 1.2949 0.0011 28 1 0.9209 -2.6220 0.0004 29 1 4.3572 -5.5835 0.0027 30 1 3.6464 -7.9208 -0.0070 31 1 3.5589 -10.1537 1.6291 32 1 -0.4747 -6.6530 -0.0015 33 1 0.2512 -4.3203 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090001754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:22 Heat of formation + Delta-G solvation = 86.047096 kcal Electronic energy + Delta-G solvation = -19495.433831 eV Core-core repulsion = 16330.348047 eV Total energy + Delta-G solvation = -3165.085784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.95581 -39.23435 -37.26425 -34.82650 -34.00807 -33.68307 -30.67418 -29.96169 -29.43458 -27.31368 -26.09363 -23.09720 -22.02134 -21.48617 -20.62299 -19.52636 -18.20696 -17.60958 -16.49793 -16.16519 -15.71892 -15.42136 -14.56390 -14.21381 -14.12559 -14.03857 -13.40132 -13.22227 -13.17481 -12.86123 -12.35312 -12.01656 -11.77253 -11.55601 -11.33737 -11.12608 -10.87757 -10.66948 -10.17818 -9.71959 -9.65016 -9.64166 -9.45216 -9.14643 -8.49660 -7.83775 -7.71315 -7.13473 -4.72664 1.63673 2.05357 2.15944 2.83345 2.89338 2.92691 2.93458 3.18699 3.24464 3.66414 3.80428 4.40334 4.45211 4.72269 4.95015 5.12876 5.23132 5.44074 5.70496 5.76783 5.93474 6.15464 6.37442 6.58366 6.68820 6.72962 6.89210 6.94370 7.07362 7.28966 7.39912 7.45850 7.72944 7.84297 7.94514 8.30568 8.39746 8.50359 8.62103 8.78978 9.77990 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.048580 B = 0.003623 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.233546 B = 7727.470558 C = 8219.705204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.411 5.411 3 N -0.333 5.333 4 C 0.214 3.786 5 N -0.526 5.526 6 C 0.512 3.488 7 N -0.644 5.644 8 C 0.568 3.432 9 O -0.498 6.498 10 C -0.284 4.284 11 C -0.030 4.030 12 C -0.181 4.181 13 C 0.129 3.871 14 C -0.436 4.436 15 H 0.087 0.913 16 C 0.073 3.927 17 N -0.763 5.763 18 Si 0.916 3.084 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.232 4.232 23 C -0.049 4.049 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.217 0.783 28 H 0.414 0.586 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.290 0.710 32 H 0.099 0.901 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 8.263 -1.590 10.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.208 5.208 3 N -0.162 5.162 4 C -0.090 4.090 5 N -0.260 5.260 6 C 0.148 3.852 7 N -0.299 5.299 8 C 0.363 3.637 9 O -0.370 6.370 10 C -0.289 4.289 11 C -0.049 4.049 12 C -0.201 4.201 13 C 0.125 3.875 14 C -0.463 4.463 15 H 0.105 0.895 16 C -0.150 4.150 17 N -0.385 5.385 18 Si 0.739 3.261 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.251 4.251 23 C -0.068 4.068 24 H 0.096 0.904 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.234 0.766 28 H 0.252 0.748 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.854 8.784 -1.422 10.136 hybrid contribution -0.932 -0.961 -0.019 1.339 sum -5.786 7.823 -1.441 9.836 Atomic orbital electron populations 1.21859 0.74423 1.04624 1.03607 1.50213 1.07348 1.03014 1.60176 1.78007 1.02096 1.06063 1.30058 1.25929 0.95680 0.90418 0.96991 1.71169 1.16031 1.10233 1.28598 1.20684 0.86421 0.83431 0.94669 1.43165 1.12007 0.99872 1.74878 1.18865 0.84892 0.84853 0.75108 1.90806 1.16062 1.83139 1.47007 1.18645 0.94062 0.88952 1.27274 1.20468 0.97392 0.92235 0.94842 1.21020 0.96373 0.94675 1.07994 1.17811 0.91694 0.92753 0.85219 1.19909 1.02255 0.91282 1.32902 0.89516 1.26152 0.93706 1.02685 0.92464 1.69740 1.12019 1.37207 1.19562 0.86168 0.80352 0.80160 0.79405 1.18795 1.19903 1.18233 1.20658 0.98082 0.92260 1.14141 1.20318 0.93158 0.95856 0.97500 0.90437 0.88799 0.89690 0.76636 0.74800 0.87823 0.85962 0.89911 0.88254 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 11.34 59.85 0.68 1.52 16 2 N -0.41 -5.82 4.05 -68.67 -0.28 -6.09 16 3 N -0.33 -5.03 12.68 29.29 0.37 -4.66 16 4 C 0.21 3.27 13.02 -91.82 -1.20 2.07 16 5 N -0.53 -10.04 9.40 -15.14 -0.14 -10.19 16 6 C 0.51 8.81 8.47 -320.42 -2.71 6.10 16 7 N -0.64 -10.74 5.34 -13.69 -0.07 -10.82 16 8 C 0.57 11.89 7.72 -12.46 -0.10 11.80 16 9 O -0.50 -12.10 15.01 5.28 0.08 -12.02 16 10 C -0.28 -6.14 5.89 -104.74 -0.62 -6.75 16 11 C -0.03 -0.70 9.52 -39.60 -0.38 -1.08 16 12 C -0.18 -4.41 8.63 -39.27 -0.34 -4.75 16 13 C 0.13 3.09 5.57 -106.80 -0.60 2.50 16 14 C -0.44 -10.28 9.04 -37.75 -0.34 -10.62 16 15 H 0.09 1.92 7.91 -52.49 -0.42 1.51 16 16 C 0.07 1.63 5.14 -17.31 -0.09 1.54 16 17 N -0.76 -17.86 10.95 55.56 0.61 -17.25 16 18 Si 0.92 16.59 29.60 -169.99 -5.03 11.56 16 19 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 20 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 21 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 22 C -0.23 -4.98 9.73 -39.27 -0.38 -5.36 16 23 C -0.05 -0.96 9.47 -39.60 -0.38 -1.34 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.55 7.55 -51.93 -0.39 0.16 16 27 H 0.22 2.35 8.06 -52.49 -0.42 1.93 16 28 H 0.41 5.33 6.00 -40.82 -0.25 5.09 16 29 H 0.10 2.40 7.63 -52.48 -0.40 2.00 16 30 H 0.12 3.05 6.16 -52.48 -0.32 2.73 16 31 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 32 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 33 H 0.09 1.30 6.37 -52.49 -0.33 0.97 16 LS Contribution 294.22 15.07 4.43 4.43 Total: -1.00 -31.01 294.22 -9.41 -40.41 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -2.94 Total: 8.99 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -6.44 Total: -4.37 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.49 Total: -49.00 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.01 -9.41 -40.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090001754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.461 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds