Wall clock time and date at job start Mon Mar 30 2020 01:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40428 * 126.83007 * 2 1 4 4 C 1.30642 * 106.96758 * 179.97438 * 3 2 1 5 5 N 1.33297 * 109.10891 * 359.74067 * 4 3 2 6 6 C 1.31522 * 109.71871 * 0.44084 * 5 4 3 7 7 N 1.38659 * 126.06964 * 179.83571 * 6 5 4 8 8 C 1.34780 * 119.99756 * 359.68201 * 7 6 5 9 9 O 1.21600 * 119.99923 * 0.02562 * 8 7 6 10 10 C 1.47562 * 120.00344 * 180.02562 * 8 7 6 11 11 C 1.40050 * 119.90289 * 180.02562 * 10 8 7 12 12 C 1.36298 * 120.10483 * 180.25266 * 11 10 8 13 13 C 1.40902 * 119.89466 * 359.47712 * 12 11 10 14 14 C 1.41081 * 120.10051 * 180.24954 * 13 12 11 15 15 H 1.07994 * 120.00359 * 204.80775 * 14 13 12 16 16 C 1.40234 * 119.99967 * 24.81256 * 14 13 12 17 17 N 1.30647 * 119.99782 * 17.72927 * 16 14 13 18 18 Si 1.86802 * 120.00134 * 197.73032 * 16 14 13 19 19 H 1.48491 * 109.46979 * 89.99939 * 18 16 14 20 20 H 1.48502 * 109.47000 * 209.99982 * 18 16 14 21 21 H 1.48504 * 109.46784 * 329.99903 * 18 16 14 22 22 C 1.40906 * 119.79695 * 0.51918 * 13 12 11 23 23 C 1.36298 * 119.89292 * 359.73627 * 22 13 12 24 24 H 1.09000 * 109.47111 * 270.02109 * 1 2 3 25 25 H 1.09001 * 109.47233 * 30.01872 * 1 2 3 26 26 H 1.08999 * 109.47391 * 150.02665 * 1 2 3 27 27 H 1.08000 * 125.44378 * 180.02562 * 4 3 2 28 28 H 0.96996 * 120.00210 * 179.69427 * 7 6 5 29 29 H 1.08004 * 119.94464 * 359.97438 * 11 10 8 30 30 H 1.08004 * 120.04865 * 179.72341 * 12 11 10 31 31 H 0.97002 * 119.99483 * 179.97438 * 17 16 14 32 32 H 1.08005 * 120.05217 * 179.70898 * 22 13 12 33 33 H 1.08001 * 119.94274 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1240 0.0000 4 6 3.5355 0.6801 0.0006 5 7 3.5179 -0.6527 0.0066 6 6 2.2741 -1.0802 0.0005 7 7 1.8664 -2.4054 0.0007 8 6 2.7838 -3.3928 0.0013 9 8 3.9691 -3.1213 0.0020 10 6 2.3500 -4.8032 0.0010 11 6 3.3051 -5.8275 0.0021 12 6 2.9090 -7.1316 -0.0034 13 6 1.5361 -7.4486 0.0010 14 6 1.1213 -8.7970 0.0007 15 1 0.1497 -9.0631 -0.3887 16 6 1.9705 -9.7920 0.5061 17 7 2.9717 -9.4654 1.2793 18 14 1.6703 -11.5843 0.0737 19 1 2.4152 -11.9263 -1.1645 20 1 2.1389 -12.4474 1.1877 21 1 0.2181 -11.8040 -0.1455 22 6 0.5788 -6.4147 -0.0001 23 6 0.9843 -5.1134 0.0001 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5134 27 1 4.4234 1.2949 0.0011 28 1 0.9209 -2.6220 0.0004 29 1 4.3572 -5.5835 0.0027 30 1 3.6464 -7.9208 -0.0070 31 1 3.5589 -10.1537 1.6291 32 1 -0.4747 -6.6530 -0.0015 33 1 0.2512 -4.3203 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090001754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:22 Heat of formation + Delta-G solvation = 69.690747 kcal Electronic energy + Delta-G solvation = -19496.143095 eV Core-core repulsion = 16330.348047 eV Total energy + Delta-G solvation = -3165.795048 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.17113 -40.83539 -38.95481 -36.25453 -35.69995 -34.80911 -32.24686 -31.59503 -30.93786 -28.34282 -27.67315 -24.63112 -23.26737 -23.08834 -22.16242 -21.02546 -19.54033 -19.26318 -18.04482 -17.33758 -17.07692 -16.93688 -15.95610 -15.75401 -15.66793 -15.27877 -15.08704 -14.50209 -14.09177 -14.01355 -14.00254 -13.69054 -13.27070 -12.87542 -12.81578 -12.67990 -12.39429 -12.20426 -11.77714 -11.37464 -11.14341 -11.08196 -10.75574 -10.70301 -9.82166 -9.58060 -9.44168 -8.80984 -6.50136 0.20203 0.67947 0.89856 1.16432 1.39288 1.44176 1.54826 1.86236 2.09543 2.15069 2.24521 2.77261 3.42979 3.57836 3.68201 4.12587 4.27117 4.36993 4.39757 4.43712 4.61305 4.73970 4.97566 5.01468 5.17327 5.23179 5.24522 5.46743 5.57408 5.74633 5.81425 5.86077 6.00347 6.17888 6.28118 6.54992 6.75001 6.87426 7.11354 7.28500 8.13468 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.048580 B = 0.003623 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.233546 B = 7727.470558 C = 8219.705204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.397 5.397 3 N -0.334 5.334 4 C 0.208 3.792 5 N -0.574 5.574 6 C 0.491 3.509 7 N -0.625 5.625 8 C 0.574 3.426 9 O -0.539 6.539 10 C -0.291 4.291 11 C -0.044 4.044 12 C -0.202 4.202 13 C 0.102 3.898 14 C -0.464 4.464 15 H 0.096 0.904 16 C 0.034 3.966 17 N -0.798 5.798 18 Si 0.988 3.012 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.249 1.249 22 C -0.241 4.241 23 C -0.034 4.034 24 H 0.096 0.904 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.249 0.751 28 H 0.432 0.568 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.296 0.704 32 H 0.122 0.878 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.479 9.025 -1.831 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.194 5.194 3 N -0.164 5.164 4 C -0.095 4.095 5 N -0.310 5.310 6 C 0.127 3.873 7 N -0.282 5.282 8 C 0.368 3.632 9 O -0.415 6.415 10 C -0.296 4.296 11 C -0.064 4.064 12 C -0.222 4.222 13 C 0.099 3.901 14 C -0.491 4.491 15 H 0.114 0.886 16 C -0.186 4.186 17 N -0.422 5.422 18 Si 0.808 3.192 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.173 1.173 22 C -0.260 4.260 23 C -0.053 4.053 24 H 0.115 0.885 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.264 0.736 28 H 0.274 0.726 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.140 0.860 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.469 9.594 -1.661 12.272 hybrid contribution -0.180 -1.017 0.068 1.035 sum -7.649 8.577 -1.593 11.602 Atomic orbital electron populations 1.22404 0.71095 1.06802 1.05571 1.50494 1.08994 1.01636 1.58235 1.77958 1.02246 1.06615 1.29612 1.26544 0.96894 0.89532 0.96562 1.71056 1.18063 1.12315 1.29556 1.20547 0.86885 0.83810 0.96058 1.42589 1.12207 0.99302 1.74058 1.18675 0.84736 0.85258 0.74505 1.90788 1.17959 1.83842 1.48863 1.18811 0.94848 0.89037 1.26934 1.20520 0.97535 0.92778 0.95537 1.20930 0.96744 0.94546 1.09971 1.18184 0.91951 0.94162 0.85834 1.20235 1.03209 0.91792 1.33828 0.88580 1.27032 0.93042 1.06833 0.91675 1.69796 1.12988 1.38884 1.20488 0.85088 0.80521 0.74615 0.78963 1.18761 1.19335 1.17262 1.20957 0.98744 0.92441 1.13898 1.20710 0.93055 0.96706 0.94783 0.88527 0.87132 0.87163 0.73557 0.72583 0.89001 0.87813 0.89260 0.85990 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 11.34 127.77 1.45 2.53 16 2 N -0.40 -10.16 4.05 -371.16 -1.50 -11.66 16 3 N -0.33 -9.39 12.68 -61.25 -0.78 -10.17 16 4 C 0.21 6.08 13.02 180.77 2.35 8.44 16 5 N -0.57 -21.58 9.40 -201.83 -1.90 -23.48 16 6 C 0.49 16.08 8.47 260.65 2.21 18.28 16 7 N -0.63 -19.52 5.34 -315.47 -1.68 -21.21 16 8 C 0.57 23.72 7.72 86.70 0.67 24.39 16 9 O -0.54 -26.70 15.01 -4.03 -0.06 -26.76 16 10 C -0.29 -12.44 5.89 -19.94 -0.12 -12.56 16 11 C -0.04 -2.14 9.52 22.26 0.21 -1.93 16 12 C -0.20 -10.26 8.63 22.47 0.19 -10.07 16 13 C 0.10 4.96 5.57 -21.28 -0.12 4.84 16 14 C -0.46 -21.97 9.04 23.45 0.21 -21.75 16 15 H 0.10 4.21 7.91 -2.91 -0.02 4.18 16 16 C 0.03 1.52 5.14 85.35 0.44 1.96 16 17 N -0.80 -38.43 10.95 21.87 0.24 -38.19 16 18 Si 0.99 33.73 29.60 68.60 2.03 35.76 16 19 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 20 H -0.27 -8.85 7.11 99.48 0.71 -8.14 16 21 H -0.25 -8.07 7.11 99.48 0.71 -7.36 16 22 C -0.24 -9.96 9.73 22.47 0.22 -9.74 16 23 C -0.03 -1.24 9.47 22.26 0.21 -1.03 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.11 0.91 7.55 -2.39 -0.02 0.90 16 27 H 0.25 5.01 8.06 -2.91 -0.02 4.98 16 28 H 0.43 9.51 6.00 -92.71 -0.56 8.96 16 29 H 0.09 4.54 7.63 -2.91 -0.02 4.51 16 30 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 31 H 0.30 12.82 8.29 -92.71 -0.77 12.05 16 32 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.14 3.51 6.37 -2.91 -0.02 3.50 16 Total: -1.00 -69.89 294.22 4.89 -65.00 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.61 Total: 27.37 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 7.93 Total: 3.34 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -5.62 Total: -104.71 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.06 Total: -26.76 kcal Atomic # 14 Polarization: 33.73 SS G_CDS: 2.03 Total: 35.76 kcal Total: -69.89 4.89 -65.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090001754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.689 kcal (2) G-P(sol) polarization free energy of solvation -69.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds