Wall clock time and date at job start Mon Mar 30 2020 00:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00125 * 2 1 4 4 H 1.48504 * 109.47068 * 270.00150 * 3 2 1 5 5 H 1.48501 * 109.47283 * 29.99821 * 3 2 1 6 6 H 1.48491 * 109.47624 * 150.00175 * 3 2 1 7 7 C 1.37875 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99908 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00089 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47381 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47015 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46715 * 180.02562 * 11 10 9 13 13 C 1.39257 * 119.99714 * 180.02562 * 12 11 10 14 14 C 1.39085 * 119.64580 * 359.97438 * 13 12 11 15 15 C 1.38305 * 119.15316 * 180.02562 * 14 13 12 16 16 C 1.39264 * 118.45576 * 359.97438 * 15 14 13 17 17 O 1.36019 * 120.38492 * 179.97438 * 16 15 14 18 18 C 1.42903 * 116.99858 * 180.02562 * 17 16 15 19 19 F 1.39894 * 109.46946 * 299.99885 * 18 17 16 20 20 F 1.39901 * 109.47165 * 59.99964 * 18 17 16 21 21 C 1.38459 * 119.22537 * 359.97438 * 16 15 14 22 22 N 1.32004 * 120.78037 * 0.02562 * 21 16 15 23 23 H 0.97004 * 120.00184 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47273 * 60.00032 * 9 7 2 25 25 H 1.09002 * 109.47221 * 299.99495 * 9 7 2 26 26 H 1.08999 * 109.46713 * 59.99906 * 10 9 7 27 27 H 1.08994 * 109.46861 * 300.00309 * 10 9 7 28 28 H 1.08999 * 109.47238 * 60.00495 * 11 10 9 29 29 H 1.09000 * 109.47120 * 299.99833 * 11 10 9 30 30 H 0.96995 * 120.00056 * 359.97438 * 12 11 10 31 31 H 1.08004 * 120.42764 * 0.02656 * 14 13 12 32 32 H 1.07992 * 120.77107 * 179.72809 * 15 14 13 33 33 H 1.08997 * 109.46924 * 180.02562 * 18 17 16 34 34 H 1.08004 * 119.61488 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6365 -0.0001 12 7 6.0398 -4.0178 -0.0009 13 6 7.4089 -4.2723 -0.0005 14 6 8.3062 -3.2095 0.0000 15 6 9.6637 -3.4739 -0.0002 16 6 10.0810 -4.8025 -0.0003 17 8 11.4066 -5.1073 -0.0010 18 6 11.7535 -6.4936 -0.0017 19 9 11.2275 -7.1065 1.1405 20 9 11.2264 -7.1057 -1.1440 21 6 9.1308 -5.8096 0.0002 22 7 7.8423 -5.5225 0.0004 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6809 0.8905 25 1 3.8752 -0.6797 -0.8895 26 1 3.6585 -3.1502 -0.8903 27 1 3.6578 -3.1506 0.8896 28 1 5.9149 -2.1228 0.8899 29 1 5.9148 -2.1226 -0.8901 30 1 5.4095 -4.7551 -0.0009 31 1 7.9474 -2.1908 0.0006 32 1 10.3834 -2.6687 -0.0042 33 1 12.8386 -6.5966 -0.0018 34 1 9.4474 -6.8421 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094155626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:41 Heat of formation + Delta-G solvation = -114.528185 kcal Electronic energy + Delta-G solvation = -19806.448341 eV Core-core repulsion = 16181.975774 eV Total energy + Delta-G solvation = -3624.472567 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.67397 -47.66823 -40.62160 -38.49269 -36.18796 -33.58013 -32.48886 -31.69034 -29.28578 -27.11587 -26.03981 -24.08381 -23.10646 -21.88382 -20.38733 -19.27517 -18.68682 -18.22835 -17.48698 -16.85024 -16.50133 -15.76147 -15.32714 -14.85633 -14.59008 -14.44736 -14.31495 -14.03968 -14.00910 -13.43010 -13.38919 -13.32336 -13.14001 -12.72465 -12.20552 -12.13840 -11.96663 -11.12402 -10.98548 -10.18636 -9.99773 -9.91822 -9.78676 -9.70471 -9.58686 -9.27396 -8.59469 -7.51334 -6.09430 -4.08577 1.07100 1.28250 2.28708 3.12812 3.24935 3.27001 3.34849 3.36791 3.73074 3.94961 4.30244 4.40070 4.46042 4.57545 4.77931 5.10003 5.24031 5.34031 5.41308 5.51130 5.60673 5.79348 5.86045 6.15463 6.36103 6.36648 6.66551 6.70967 7.02738 7.16463 7.29885 7.62423 7.72547 8.10023 8.47177 8.94870 9.52109 11.03930 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.052432 B = 0.002808 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.892265 B = 9968.434158 C =10311.930245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.113 4.113 11 C 0.120 3.880 12 N -0.717 5.717 13 C 0.391 3.609 14 C -0.208 4.208 15 C -0.041 4.041 16 C -0.028 4.028 17 O -0.318 6.318 18 C 0.409 3.591 19 F -0.200 7.200 20 F -0.200 7.200 21 C 0.095 3.905 22 N -0.518 5.518 23 H 0.264 0.736 24 H 0.018 0.982 25 H 0.014 0.986 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.406 0.594 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.180 0.820 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.963 -10.535 0.018 28.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.151 4.151 11 C -0.003 4.003 12 N -0.349 5.349 13 C 0.154 3.846 14 C -0.234 4.234 15 C -0.067 4.067 16 C -0.075 4.075 17 O -0.235 6.235 18 C 0.319 3.681 19 F -0.182 7.182 20 F -0.182 7.182 21 C -0.064 4.064 22 N -0.237 5.237 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.242 0.758 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.197 0.803 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 25.256 -10.760 0.021 27.452 hybrid contribution 0.532 0.968 -0.021 1.104 sum 25.788 -9.792 0.001 27.584 Atomic orbital electron populations 1.69912 1.06340 1.26988 1.50848 1.25039 0.94756 0.99243 0.94479 0.86760 0.80334 0.83544 0.78527 1.20250 1.21359 1.18964 1.21093 0.89296 0.94571 1.51178 0.90982 1.19499 0.97402 0.91304 0.96547 1.21684 0.90252 1.01060 1.02122 1.21746 0.96961 0.80646 1.00972 1.44853 1.01905 1.09086 1.79044 1.18500 0.86360 0.88656 0.91057 1.21365 0.91940 1.00123 1.09948 1.20628 0.95552 0.93641 0.96870 1.19499 0.82244 0.95437 1.10320 1.86574 1.23241 1.24001 1.89690 1.23364 0.97002 0.75934 0.71813 1.93102 1.89388 1.83574 1.52159 1.93104 1.89351 1.83606 1.52159 1.22782 0.87537 0.98740 0.97326 1.67126 1.16418 1.20405 1.19728 0.92652 0.96335 0.96759 0.91925 0.91894 0.92073 0.92080 0.75836 0.83794 0.83930 0.80338 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.55 9.66 -34.44 -0.33 -14.89 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 10 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 11 C 0.12 1.78 4.89 -4.04 -0.02 1.76 16 12 N -0.72 -10.28 5.74 -60.38 -0.35 -10.63 16 13 C 0.39 5.67 7.65 -154.85 -1.18 4.49 16 14 C -0.21 -2.61 9.33 -39.24 -0.37 -2.98 16 15 C -0.04 -0.46 10.12 -39.18 -0.40 -0.86 16 16 C -0.03 -0.33 6.50 -39.12 -0.25 -0.58 16 17 O -0.32 -3.06 10.45 -19.80 -0.21 -3.27 16 18 C 0.41 2.78 5.98 101.05 0.60 3.38 16 19 F -0.20 -1.74 15.60 2.25 0.04 -1.71 16 20 F -0.20 -1.74 15.60 2.25 0.04 -1.71 16 21 C 0.10 1.26 9.44 -17.40 -0.16 1.09 16 22 N -0.52 -7.80 10.39 -12.29 -0.13 -7.92 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 25 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 0.87 7.93 -51.93 -0.41 0.46 16 29 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 30 H 0.41 5.68 8.60 -40.82 -0.35 5.32 16 31 H 0.14 1.59 6.70 -52.48 -0.35 1.24 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.18 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.16 1.87 5.10 -52.48 -0.27 1.60 16 LS Contribution 298.11 15.07 4.49 4.49 Total: -1.00 -32.21 298.11 -6.32 -38.52 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -3.84 Total: 1.78 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.47 Total: -9.30 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.30 Total: -45.32 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -0.21 Total: -3.27 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.07 Total: -3.41 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.21 -6.32 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094155626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.004 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds