Wall clock time and date at job start Mon Mar 30 2020 00:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00125 * 2 1 4 4 H 1.48504 * 109.47068 * 270.00150 * 3 2 1 5 5 H 1.48501 * 109.47283 * 29.99821 * 3 2 1 6 6 H 1.48491 * 109.47624 * 150.00175 * 3 2 1 7 7 C 1.37875 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99908 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00089 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47381 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47015 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46715 * 180.02562 * 11 10 9 13 13 C 1.39257 * 119.99714 * 180.02562 * 12 11 10 14 14 C 1.39085 * 119.64580 * 359.97438 * 13 12 11 15 15 C 1.38305 * 119.15316 * 180.02562 * 14 13 12 16 16 C 1.39264 * 118.45576 * 359.97438 * 15 14 13 17 17 O 1.36019 * 120.38492 * 179.97438 * 16 15 14 18 18 C 1.42903 * 116.99858 * 180.02562 * 17 16 15 19 19 F 1.39894 * 109.46946 * 299.99885 * 18 17 16 20 20 F 1.39901 * 109.47165 * 59.99964 * 18 17 16 21 21 C 1.38459 * 119.22537 * 359.97438 * 16 15 14 22 22 N 1.32004 * 120.78037 * 0.02562 * 21 16 15 23 23 H 0.97004 * 120.00184 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47273 * 60.00032 * 9 7 2 25 25 H 1.09002 * 109.47221 * 299.99495 * 9 7 2 26 26 H 1.08999 * 109.46713 * 59.99906 * 10 9 7 27 27 H 1.08994 * 109.46861 * 300.00309 * 10 9 7 28 28 H 1.08999 * 109.47238 * 60.00495 * 11 10 9 29 29 H 1.09000 * 109.47120 * 299.99833 * 11 10 9 30 30 H 0.96995 * 120.00056 * 359.97438 * 12 11 10 31 31 H 1.08004 * 120.42764 * 0.02656 * 14 13 12 32 32 H 1.07992 * 120.77107 * 179.72809 * 15 14 13 33 33 H 1.08997 * 109.46924 * 180.02562 * 18 17 16 34 34 H 1.08004 * 119.61488 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6365 -0.0001 12 7 6.0398 -4.0178 -0.0009 13 6 7.4089 -4.2723 -0.0005 14 6 8.3062 -3.2095 0.0000 15 6 9.6637 -3.4739 -0.0002 16 6 10.0810 -4.8025 -0.0003 17 8 11.4066 -5.1073 -0.0010 18 6 11.7535 -6.4936 -0.0017 19 9 11.2275 -7.1065 1.1405 20 9 11.2264 -7.1057 -1.1440 21 6 9.1308 -5.8096 0.0002 22 7 7.8423 -5.5225 0.0004 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6809 0.8905 25 1 3.8752 -0.6797 -0.8895 26 1 3.6585 -3.1502 -0.8903 27 1 3.6578 -3.1506 0.8896 28 1 5.9149 -2.1228 0.8899 29 1 5.9148 -2.1226 -0.8901 30 1 5.4095 -4.7551 -0.0009 31 1 7.9474 -2.1908 0.0006 32 1 10.3834 -2.6687 -0.0042 33 1 12.8386 -6.5966 -0.0018 34 1 9.4474 -6.8421 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094155626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:40 Heat of formation + Delta-G solvation = -136.466313 kcal Electronic energy + Delta-G solvation = -19807.399650 eV Core-core repulsion = 16181.975774 eV Total energy + Delta-G solvation = -3625.423876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.27319 -48.28102 -41.54432 -39.32941 -37.40213 -35.33704 -33.52140 -33.35479 -30.47205 -28.44087 -26.94181 -25.07767 -24.46875 -22.96264 -21.99443 -20.03153 -19.41750 -18.87184 -18.83861 -18.49660 -17.37813 -16.63795 -16.48830 -16.29223 -15.81575 -15.40430 -15.33686 -15.04000 -14.73330 -14.66243 -14.43796 -14.26141 -14.18791 -13.88907 -13.72202 -13.57210 -12.83045 -12.72142 -12.63716 -11.84782 -11.70398 -11.62004 -11.32170 -10.84368 -10.80506 -10.74793 -10.57365 -8.51499 -8.27901 -6.33054 0.12421 0.34692 1.39773 1.41891 1.53601 1.65904 2.17530 2.38758 2.61258 2.76282 3.08043 3.50346 3.53785 3.73926 3.75073 3.89389 4.05758 4.22292 4.22606 4.46392 4.54822 4.72149 4.87153 4.92016 4.94378 5.03346 5.27487 5.47355 5.58166 5.65936 5.79851 5.99491 6.29054 6.56551 6.75978 7.08410 7.31824 8.89105 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.052432 B = 0.002808 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.892265 B = 9968.434158 C =10311.930245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.536 4.536 8 H 0.028 0.972 9 C -0.008 4.008 10 C -0.104 4.104 11 C 0.135 3.865 12 N -0.723 5.723 13 C 0.370 3.630 14 C -0.208 4.208 15 C -0.040 4.040 16 C -0.023 4.023 17 O -0.319 6.319 18 C 0.402 3.598 19 F -0.213 7.213 20 F -0.213 7.213 21 C 0.076 3.924 22 N -0.545 5.545 23 H 0.266 0.734 24 H 0.029 0.971 25 H 0.027 0.973 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.403 0.597 31 H 0.161 0.839 32 H 0.174 0.826 33 H 0.238 0.762 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.504 -9.222 0.019 30.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.160 1.160 7 C -0.574 4.574 8 H 0.046 0.954 9 C -0.046 4.046 10 C -0.142 4.142 11 C 0.012 3.988 12 N -0.356 5.356 13 C 0.134 3.866 14 C -0.233 4.233 15 C -0.065 4.065 16 C -0.071 4.071 17 O -0.236 6.236 18 C 0.313 3.687 19 F -0.195 7.195 20 F -0.195 7.195 21 C -0.082 4.082 22 N -0.264 5.264 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.238 0.762 31 H 0.179 0.821 32 H 0.191 0.809 33 H 0.254 0.746 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 28.844 -9.482 0.022 30.363 hybrid contribution -0.548 0.411 -0.023 0.686 sum 28.296 -9.071 0.000 29.714 Atomic orbital electron populations 1.70087 1.08573 1.28220 1.52734 1.26114 0.95655 1.03920 0.94056 0.85583 0.79711 0.77630 0.79269 1.19109 1.21456 1.16034 1.21517 0.92401 0.93006 1.50456 0.95363 1.19443 0.93612 0.94186 0.97345 1.21466 0.93047 0.98291 1.01408 1.21493 0.93974 0.81210 1.02150 1.44724 1.02161 1.08695 1.80003 1.18698 0.86426 0.89180 0.92317 1.21605 0.92232 1.00326 1.09141 1.21010 0.95711 0.94245 0.95582 1.19638 0.83118 0.95560 1.08743 1.86591 1.21656 1.25957 1.89358 1.24367 0.99240 0.74392 0.70725 1.93077 1.89823 1.83699 1.52892 1.93079 1.89788 1.83730 1.52892 1.22920 0.87443 0.99500 0.98308 1.67035 1.17529 1.21233 1.20624 0.92554 0.95318 0.95438 0.92756 0.92759 0.90884 0.90824 0.76157 0.82113 0.80851 0.74595 0.82262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.95 13.96 21.45 0.30 -59.65 16 2 C 0.00 -0.07 5.47 84.65 0.46 0.40 16 3 Si 0.96 42.84 27.47 68.60 1.88 44.72 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 7 C -0.54 -30.34 9.66 25.60 0.25 -30.09 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 9 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 10 C -0.10 -3.71 5.27 30.60 0.16 -3.55 16 11 C 0.14 3.72 4.89 86.38 0.42 4.14 16 12 N -0.72 -20.07 5.74 -344.94 -1.98 -22.05 16 13 C 0.37 10.29 7.65 132.99 1.02 11.31 16 14 C -0.21 -4.69 9.33 22.49 0.21 -4.48 16 15 C -0.04 -0.78 10.12 22.53 0.23 -0.55 16 16 C -0.02 -0.50 6.50 22.57 0.15 -0.35 16 17 O -0.32 -5.27 10.45 -93.77 -0.98 -6.25 16 18 C 0.40 4.43 5.98 113.37 0.68 5.11 16 19 F -0.21 -3.36 15.60 44.97 0.70 -2.66 16 20 F -0.21 -3.36 15.60 44.97 0.70 -2.66 16 21 C 0.08 1.96 9.44 84.72 0.80 2.76 16 22 N -0.55 -16.22 10.39 -192.78 -2.00 -18.22 16 23 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 24 H 0.03 1.20 7.20 -2.39 -0.02 1.18 16 25 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 1.85 7.93 -2.39 -0.02 1.83 16 29 H 0.07 1.86 7.93 -2.39 -0.02 1.84 16 30 H 0.40 11.32 8.60 -92.71 -0.80 10.52 16 31 H 0.16 2.99 6.70 -2.91 -0.02 2.97 16 32 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.24 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.16 3.78 5.10 -2.91 -0.01 3.77 16 Total: -1.00 -71.83 298.11 3.40 -68.43 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.28 Total: 13.87 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 4.49 Total: -15.53 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -3.68 Total: -99.92 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.98 Total: -6.25 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.40 Total: -5.32 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Total: -71.83 3.40 -68.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094155626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.036 kcal (2) G-P(sol) polarization free energy of solvation -71.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds