Wall clock time and date at job start Mon Mar 30 2020 01:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38296 * 119.97418 * 2 1 4 4 C 1.38248 * 120.13612 * 180.02562 * 3 2 1 5 5 C 1.38145 * 120.06664 * 0.02562 * 4 3 2 6 6 C 1.38811 * 119.93113 * 359.97438 * 5 4 3 7 7 N 1.40222 * 120.06203 * 180.02562 * 6 5 4 8 8 C 1.35096 * 126.61512 * 4.99928 * 7 6 5 9 9 C 1.36693 * 106.78155 * 179.97438 * 8 7 6 10 10 C 1.47425 * 125.77287 * 180.02562 * 9 8 7 11 11 O 1.21633 * 120.00032 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99932 * 179.73066 * 10 9 8 13 13 C 1.36949 * 119.99655 * 180.27588 * 12 10 9 14 14 H 1.08002 * 120.00629 * 0.02562 * 13 12 10 15 15 C 1.39001 * 119.99736 * 179.97438 * 13 12 10 16 16 N 1.31402 * 119.99821 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99718 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.46676 * 90.00300 * 17 15 13 19 19 H 1.48502 * 109.46977 * 209.99598 * 17 15 13 20 20 H 1.48494 * 109.47494 * 330.00326 * 17 15 13 21 21 N 1.34435 * 108.45043 * 0.26939 * 9 8 7 22 22 N 1.28746 * 109.58345 * 359.54342 * 21 9 8 23 23 C 1.38106 * 119.96198 * 180.29387 * 2 1 3 24 24 H 1.09000 * 109.47059 * 89.99622 * 1 2 3 25 25 H 1.08996 * 109.47632 * 210.00449 * 1 2 3 26 26 H 1.08999 * 109.46791 * 330.00586 * 1 2 3 27 27 H 1.08001 * 119.93209 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.96894 * 179.97438 * 4 3 2 29 29 H 1.08004 * 120.03684 * 180.02562 * 5 4 3 30 30 H 1.08000 * 126.60686 * 359.97438 * 8 7 6 31 31 H 0.97000 * 119.99736 * 0.27105 * 12 10 9 32 32 H 0.96996 * 119.99504 * 180.02562 * 16 15 13 33 33 H 1.07994 * 120.03546 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5804 1.2019 -0.0005 5 6 4.2759 0.0083 -0.0016 6 6 3.5852 -1.1958 -0.0016 7 7 4.2884 -2.4089 -0.0021 8 6 5.6271 -2.5644 0.0918 9 6 5.8721 -3.9086 0.0516 10 6 7.1999 -4.5451 0.1242 11 8 8.1984 -3.8587 0.2303 12 7 7.3069 -5.8878 0.0791 13 6 8.5399 -6.4793 0.1523 14 1 9.4265 -5.8698 0.2466 15 6 8.6502 -7.8641 0.1063 16 7 9.8332 -8.4317 0.1771 17 14 7.1165 -8.9184 -0.0546 18 1 6.8188 -9.1428 -1.4921 19 1 7.3417 -10.2251 0.6141 20 1 5.9700 -8.2254 0.5861 21 7 4.6979 -4.5516 -0.0709 22 7 3.7375 -3.6946 -0.0998 23 6 2.1967 -1.1965 -0.0061 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6564 2.1324 -0.0004 28 1 4.1173 2.1390 -0.0010 29 1 5.3559 0.0119 -0.0016 30 1 6.3620 -1.7781 0.1814 31 1 6.5105 -6.4352 -0.0051 32 1 9.9102 -9.3980 0.1446 33 1 1.6567 -2.1317 -0.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101516800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:09 Heat of formation + Delta-G solvation = 90.429266 kcal Electronic energy + Delta-G solvation = -19240.519686 eV Core-core repulsion = 16075.623928 eV Total energy + Delta-G solvation = -3164.895759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.14515 -39.68906 -38.05690 -34.92591 -34.09360 -32.77779 -31.75919 -30.93265 -29.84680 -27.37524 -25.52680 -24.23154 -23.04828 -21.87185 -20.87293 -19.63313 -18.82320 -17.76432 -16.64197 -15.94160 -15.79737 -15.31240 -15.12107 -14.83728 -14.19565 -14.16444 -13.69988 -13.50503 -13.48870 -12.86040 -12.67631 -12.61760 -12.27805 -12.09576 -11.94120 -11.42054 -11.23719 -11.07004 -11.03422 -10.55799 -10.03993 -9.67696 -9.27732 -9.16087 -8.83507 -8.56611 -8.25668 -6.42588 -3.88318 0.38119 0.91138 1.74745 2.06204 2.17660 3.10933 3.15624 3.18525 3.35194 4.07431 4.12453 4.13748 4.36120 4.45632 4.55930 4.70463 4.83889 4.86059 4.97569 5.19808 5.23573 5.24290 5.29829 5.33875 5.47212 5.56546 5.70633 5.94971 6.03511 6.11645 6.30181 6.33277 6.77857 7.46957 8.02425 8.13068 8.51852 8.82977 9.33217 9.73205 10.68459 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039744 B = 0.003738 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.344533 B = 7489.739769 C = 8176.364666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.066 4.066 3 C -0.124 4.124 4 C -0.091 4.091 5 C -0.135 4.135 6 C 0.152 3.848 7 N -0.321 5.321 8 C 0.068 3.932 9 C -0.053 4.053 10 C 0.514 3.486 11 O -0.579 6.579 12 N -0.555 5.555 13 C -0.303 4.303 14 H 0.125 0.875 15 C 0.047 3.953 16 N -0.866 5.866 17 Si 0.875 3.125 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.261 1.261 21 N -0.209 5.209 22 N -0.071 5.071 23 C -0.112 4.112 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.204 0.796 31 H 0.381 0.619 32 H 0.277 0.723 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.122 17.886 -0.559 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.067 4.067 3 C -0.143 4.143 4 C -0.109 4.109 5 C -0.156 4.156 6 C 0.060 3.940 7 N -0.102 5.102 8 C -0.084 4.084 9 C -0.191 4.191 10 C 0.299 3.701 11 O -0.463 6.463 12 N -0.190 5.190 13 C -0.431 4.431 14 H 0.143 0.857 15 C -0.158 4.158 16 N -0.504 5.504 17 Si 0.700 3.300 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.185 1.185 21 N -0.083 5.083 22 N -0.049 5.049 23 C -0.132 4.132 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.221 0.779 31 H 0.215 0.785 32 H 0.088 0.912 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.540 17.209 -0.618 25.304 hybrid contribution -0.142 -0.348 -0.031 0.377 sum -18.682 16.861 -0.649 25.174 Atomic orbital electron populations 1.20824 0.90304 1.03267 1.02821 1.19819 0.96553 0.92133 0.98150 1.21167 0.94248 0.97804 1.01051 1.20992 0.94151 0.97373 0.98416 1.20999 1.00840 0.90529 1.03199 1.17603 0.91602 0.81849 1.02978 1.47564 1.05638 1.07062 1.49895 1.23260 0.84995 0.99360 1.00798 1.22080 0.94460 0.90861 1.11653 1.16103 0.84735 0.82656 0.86627 1.90668 1.36001 1.62601 1.57078 1.42075 1.09229 1.05303 1.62433 1.19538 0.85157 0.91196 1.47258 0.85711 1.25100 0.97313 0.96593 0.96818 1.69618 1.22453 1.11522 1.46785 0.86697 0.82778 0.80925 0.79611 1.19141 1.19818 1.18550 1.74663 0.98100 1.25246 1.10307 1.81935 1.17525 0.82181 1.23229 1.20832 0.91353 0.99451 1.01580 0.90676 0.91073 0.91102 0.85278 0.84654 0.84601 0.77940 0.78478 0.91207 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.07 -0.55 5.88 -104.65 -0.62 -1.16 16 3 C -0.12 -0.89 9.70 -39.56 -0.38 -1.28 16 4 C -0.09 -0.69 10.04 -39.61 -0.40 -1.08 16 5 C -0.13 -1.32 9.47 -39.40 -0.37 -1.69 16 6 C 0.15 1.87 6.69 -83.58 -0.56 1.31 16 7 N -0.32 -4.98 3.82 -10.40 -0.04 -5.02 16 8 C 0.07 1.13 10.60 -16.67 -0.18 0.95 16 9 C -0.05 -1.09 6.99 -83.55 -0.58 -1.67 16 10 C 0.51 12.66 7.77 -12.52 -0.10 12.56 16 11 O -0.58 -15.72 16.44 5.25 0.09 -15.63 16 12 N -0.56 -14.25 5.08 -11.95 -0.06 -14.31 16 13 C -0.30 -8.67 10.16 -14.98 -0.15 -8.82 16 14 H 0.13 3.97 7.38 -52.49 -0.39 3.58 16 15 C 0.05 1.30 5.50 -17.45 -0.10 1.21 16 16 N -0.87 -24.98 13.96 55.50 0.77 -24.21 16 17 Si 0.87 20.02 27.74 -169.99 -4.71 15.30 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.26 -5.72 6.52 56.52 0.37 -5.36 16 21 N -0.21 -4.23 12.03 32.85 0.40 -3.84 16 22 N -0.07 -1.26 13.13 60.35 0.79 -0.47 16 23 C -0.11 -1.22 9.33 -39.40 -0.37 -1.58 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 27 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 28 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 29 H 0.14 1.15 6.84 -52.48 -0.36 0.79 16 30 H 0.20 2.72 7.15 -52.49 -0.38 2.34 16 31 H 0.38 9.13 5.44 -40.82 -0.22 8.91 16 32 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.14 1.55 7.74 -52.49 -0.41 1.14 16 LS Contribution 298.35 15.07 4.50 4.50 Total: -1.00 -33.11 298.35 -4.74 -37.85 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -3.03 Total: 7.40 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -3.44 Total: -1.57 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 1.86 Total: -47.85 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.09 Total: -15.63 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.71 Total: 15.30 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.11 -4.74 -37.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101516800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.281 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds