Wall clock time and date at job start Mon Mar 30 2020 01:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38296 * 119.97418 * 2 1 4 4 C 1.38248 * 120.13612 * 180.02562 * 3 2 1 5 5 C 1.38145 * 120.06664 * 0.02562 * 4 3 2 6 6 C 1.38811 * 119.93113 * 359.97438 * 5 4 3 7 7 N 1.40222 * 120.06203 * 180.02562 * 6 5 4 8 8 C 1.35096 * 126.61512 * 4.99928 * 7 6 5 9 9 C 1.36693 * 106.78155 * 179.97438 * 8 7 6 10 10 C 1.47425 * 125.77287 * 180.02562 * 9 8 7 11 11 O 1.21633 * 120.00032 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99932 * 179.73066 * 10 9 8 13 13 C 1.36949 * 119.99655 * 180.27588 * 12 10 9 14 14 H 1.08002 * 120.00629 * 0.02562 * 13 12 10 15 15 C 1.39001 * 119.99736 * 179.97438 * 13 12 10 16 16 N 1.31402 * 119.99821 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99718 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.46676 * 90.00300 * 17 15 13 19 19 H 1.48502 * 109.46977 * 209.99598 * 17 15 13 20 20 H 1.48494 * 109.47494 * 330.00326 * 17 15 13 21 21 N 1.34435 * 108.45043 * 0.26939 * 9 8 7 22 22 N 1.28746 * 109.58345 * 359.54342 * 21 9 8 23 23 C 1.38106 * 119.96198 * 180.29387 * 2 1 3 24 24 H 1.09000 * 109.47059 * 89.99622 * 1 2 3 25 25 H 1.08996 * 109.47632 * 210.00449 * 1 2 3 26 26 H 1.08999 * 109.46791 * 330.00586 * 1 2 3 27 27 H 1.08001 * 119.93209 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.96894 * 179.97438 * 4 3 2 29 29 H 1.08004 * 120.03684 * 180.02562 * 5 4 3 30 30 H 1.08000 * 126.60686 * 359.97438 * 8 7 6 31 31 H 0.97000 * 119.99736 * 0.27105 * 12 10 9 32 32 H 0.96996 * 119.99504 * 180.02562 * 16 15 13 33 33 H 1.07994 * 120.03546 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5804 1.2019 -0.0005 5 6 4.2759 0.0083 -0.0016 6 6 3.5852 -1.1958 -0.0016 7 7 4.2884 -2.4089 -0.0021 8 6 5.6271 -2.5644 0.0918 9 6 5.8721 -3.9086 0.0516 10 6 7.1999 -4.5451 0.1242 11 8 8.1984 -3.8587 0.2303 12 7 7.3069 -5.8878 0.0791 13 6 8.5399 -6.4793 0.1523 14 1 9.4265 -5.8698 0.2466 15 6 8.6502 -7.8641 0.1063 16 7 9.8332 -8.4317 0.1771 17 14 7.1165 -8.9184 -0.0546 18 1 6.8188 -9.1428 -1.4921 19 1 7.3417 -10.2251 0.6141 20 1 5.9700 -8.2254 0.5861 21 7 4.6979 -4.5516 -0.0709 22 7 3.7375 -3.6946 -0.0998 23 6 2.1967 -1.1965 -0.0061 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6564 2.1324 -0.0004 28 1 4.1173 2.1390 -0.0010 29 1 5.3559 0.0119 -0.0016 30 1 6.3620 -1.7781 0.1814 31 1 6.5105 -6.4352 -0.0051 32 1 9.9102 -9.3980 0.1446 33 1 1.6567 -2.1317 -0.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101516800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:08 Heat of formation + Delta-G solvation = 67.190245 kcal Electronic energy + Delta-G solvation = -19241.527406 eV Core-core repulsion = 16075.623928 eV Total energy + Delta-G solvation = -3165.903478 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.51806 -40.53813 -39.97068 -36.21083 -35.97002 -33.87508 -33.43359 -32.27657 -30.95297 -27.99960 -27.40920 -25.36515 -24.44002 -23.05048 -21.85501 -21.34280 -20.66669 -19.12564 -17.72230 -17.29580 -17.09290 -16.90665 -16.23514 -16.16087 -15.54001 -15.50728 -14.97688 -14.78195 -14.69779 -14.27753 -14.20853 -13.53368 -13.48498 -13.10716 -13.06721 -12.70737 -12.50776 -12.41186 -12.10589 -12.05146 -12.04132 -11.65016 -10.87315 -10.62103 -10.35689 -9.89564 -9.51802 -8.52401 -6.09713 -0.63414 0.23758 0.55310 0.72514 0.87802 1.30057 1.32852 1.40257 2.15338 2.24434 2.59868 2.64636 3.12070 3.13291 3.33610 3.70819 3.84210 3.87590 3.98100 4.10263 4.24729 4.28053 4.50228 4.60377 4.80696 4.84199 4.88029 5.22255 5.24628 5.30771 5.41903 5.43212 5.55871 5.83101 5.90843 6.40344 6.67367 6.76779 7.24422 7.72223 8.63245 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039744 B = 0.003738 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.344533 B = 7489.739769 C = 8176.364666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 C -0.109 4.109 4 C -0.087 4.087 5 C -0.135 4.135 6 C 0.106 3.894 7 N -0.302 5.302 8 C 0.096 3.904 9 C -0.087 4.087 10 C 0.526 3.474 11 O -0.609 6.609 12 N -0.563 5.563 13 C -0.330 4.330 14 H 0.075 0.925 15 C 0.003 3.997 16 N -0.912 5.912 17 Si 0.947 3.053 18 H -0.254 1.254 19 H -0.261 1.261 20 H -0.247 1.247 21 N -0.229 5.229 22 N -0.078 5.078 23 C -0.124 4.124 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.164 0.836 28 H 0.169 0.831 29 H 0.148 0.852 30 H 0.235 0.765 31 H 0.390 0.610 32 H 0.285 0.715 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.355 20.570 -0.713 29.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.070 4.070 3 C -0.127 4.127 4 C -0.105 4.105 5 C -0.156 4.156 6 C 0.016 3.984 7 N -0.081 5.081 8 C -0.058 4.058 9 C -0.226 4.226 10 C 0.312 3.688 11 O -0.495 6.495 12 N -0.200 5.200 13 C -0.459 4.459 14 H 0.093 0.907 15 C -0.199 4.199 16 N -0.551 5.551 17 Si 0.767 3.233 18 H -0.179 1.179 19 H -0.185 1.185 20 H -0.171 1.171 21 N -0.102 5.102 22 N -0.056 5.056 23 C -0.144 4.144 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.182 0.818 28 H 0.186 0.814 29 H 0.165 0.835 30 H 0.251 0.749 31 H 0.226 0.774 32 H 0.095 0.905 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.818 19.926 -0.773 29.558 hybrid contribution 0.714 -0.754 0.020 1.038 sum -21.105 19.172 -0.753 28.523 Atomic orbital electron populations 1.20895 0.88505 1.04180 1.03629 1.20152 0.97914 0.91620 0.97331 1.21658 0.94401 0.98645 0.98043 1.21431 0.94553 0.97707 0.96843 1.21296 1.01675 0.90258 1.02380 1.18049 0.92290 0.81116 1.06991 1.47722 1.05333 1.07526 1.47513 1.23619 0.85941 0.98524 0.97749 1.21498 0.92941 0.92267 1.15917 1.16641 0.86027 0.82239 0.83887 1.90633 1.37906 1.63321 1.57616 1.41911 1.08411 1.05811 1.63897 1.19149 0.85006 0.91673 1.50095 0.90701 1.25936 1.01041 0.97351 0.95572 1.69737 1.24981 1.12375 1.47979 0.85603 0.78357 0.78980 0.80341 1.17866 1.18499 1.17127 1.74607 0.98076 1.26304 1.11219 1.81852 1.17069 0.83075 1.23614 1.20943 0.90992 1.00292 1.02142 0.89827 0.91413 0.89032 0.81841 0.81363 0.83461 0.74869 0.77399 0.90518 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.01 71.24 0.71 -0.25 16 2 C -0.07 -0.93 5.88 -19.88 -0.12 -1.05 16 3 C -0.11 -1.05 9.70 22.29 0.22 -0.84 16 4 C -0.09 -0.92 10.04 22.25 0.22 -0.69 16 5 C -0.14 -2.22 9.47 22.39 0.21 -2.01 16 6 C 0.11 2.41 6.69 38.08 0.25 2.67 16 7 N -0.30 -9.00 3.82 -186.82 -0.71 -9.72 16 8 C 0.10 3.06 10.60 83.83 0.89 3.95 16 9 C -0.09 -3.60 6.99 40.80 0.29 -3.32 16 10 C 0.53 26.66 7.77 86.66 0.67 27.33 16 11 O -0.61 -34.23 16.44 -4.14 -0.07 -34.30 16 12 N -0.56 -29.84 5.08 -309.96 -1.58 -31.42 16 13 C -0.33 -19.93 10.16 84.08 0.85 -19.07 16 14 H 0.07 5.15 7.38 -2.91 -0.02 5.13 16 15 C 0.00 0.16 5.50 84.94 0.47 0.63 16 16 N -0.91 -54.58 13.96 21.67 0.30 -54.28 16 17 Si 0.95 41.66 27.74 68.60 1.90 43.56 16 18 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 19 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 20 H -0.25 -10.24 6.52 99.48 0.65 -9.60 16 21 N -0.23 -9.25 12.03 -49.99 -0.60 -9.85 16 22 N -0.08 -2.75 13.13 37.02 0.49 -2.27 16 23 C -0.12 -2.48 9.33 22.38 0.21 -2.27 16 24 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 26 H 0.09 0.40 8.08 -2.39 -0.02 0.38 16 27 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 28 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 29 H 0.15 2.00 6.84 -2.91 -0.02 1.98 16 30 H 0.24 5.77 7.15 -2.91 -0.02 5.75 16 31 H 0.39 18.92 5.44 -92.71 -0.50 18.41 16 32 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.13 2.79 7.74 -2.91 -0.02 2.77 16 Total: -1.00 -76.68 298.35 5.21 -71.47 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.60 Total: 21.73 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.88 Total: 5.08 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -2.10 Total: -107.53 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.07 Total: -34.30 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.90 Total: 43.56 kcal Total: -76.68 5.21 -71.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101516800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.655 kcal (2) G-P(sol) polarization free energy of solvation -76.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds