Wall clock time and date at job start Mon Mar 30 2020 00:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35231 * 107.86649 * 179.83718 * 11 10 9 13 13 C 1.40428 * 107.87011 * 0.42675 * 12 11 10 14 14 N 1.40060 * 125.98252 * 179.73722 * 13 12 11 15 15 C 1.34777 * 119.99514 * 359.97123 * 14 13 12 16 16 O 1.21538 * 120.00412 * 0.02562 * 15 14 13 17 17 C 1.48136 * 120.00007 * 179.97438 * 15 14 13 18 18 C 1.39324 * 119.72720 * 180.02562 * 17 15 14 19 19 C 1.38579 * 119.05895 * 180.02562 * 18 17 15 20 20 C 1.38625 * 118.48975 * 359.97438 * 19 18 17 21 21 C 1.38564 * 119.35903 * 0.02562 * 20 19 18 22 22 N 1.31527 * 120.89802 * 359.72232 * 21 20 19 23 23 N 1.31240 * 108.04229 * 359.73425 * 13 12 11 24 24 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 26 26 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 27 27 H 1.07995 * 126.06499 * 359.96323 * 11 10 9 28 28 H 1.08000 * 126.06812 * 180.16297 * 12 11 10 29 29 H 0.96996 * 120.00229 * 179.97438 * 14 13 12 30 30 H 1.08006 * 120.47064 * 359.97438 * 18 17 15 31 31 H 1.08002 * 120.75755 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.32365 * 180.02562 * 20 19 18 33 33 H 1.07997 * 119.54850 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0539 -4.4044 -0.5779 13 6 4.2969 -4.6708 0.5745 14 7 4.2287 -5.8964 1.2490 15 6 4.9316 -6.9540 0.7977 16 8 5.6251 -6.8442 -0.1944 17 6 4.8599 -8.2501 1.5114 18 6 5.5894 -9.3396 1.0401 19 6 5.5117 -10.5457 1.7182 20 6 4.7073 -10.6203 2.8447 21 6 4.0094 -9.4964 3.2568 22 7 4.1051 -8.3625 2.5973 23 7 3.6647 -3.5705 0.9089 24 1 -0.4850 0.8400 0.0004 25 1 3.8711 -0.6780 -0.9023 26 1 3.8785 -0.6824 0.8776 27 1 5.2835 -2.6016 -1.7662 28 1 5.6858 -5.1075 -1.1002 29 1 3.6755 -5.9839 2.0409 30 1 6.2060 -9.2457 0.1584 31 1 6.0659 -11.4077 1.3772 32 1 4.6254 -11.5454 3.3959 33 1 3.3815 -9.5512 4.1338 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117713536.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:11 Heat of formation + Delta-G solvation = 69.583855 kcal Electronic energy + Delta-G solvation = -19156.375704 eV Core-core repulsion = 15990.576020 eV Total energy + Delta-G solvation = -3165.799684 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.35630 -41.45676 -39.96411 -36.36178 -35.25468 -33.69919 -33.08761 -32.32484 -31.02384 -29.08823 -26.21822 -24.57167 -24.31262 -22.97384 -21.89617 -21.10195 -19.11877 -19.10726 -18.20402 -17.63313 -17.04335 -16.73422 -16.58930 -16.25143 -16.03399 -15.45501 -15.12979 -14.79475 -14.60741 -14.44189 -14.08101 -13.88334 -13.80268 -13.03354 -12.87761 -12.66331 -12.21394 -11.82638 -11.72261 -11.52363 -11.28907 -10.96213 -10.88227 -10.57866 -10.25236 -9.81531 -9.15866 -8.37977 -6.48831 -0.45059 0.26621 0.96984 1.25458 1.37837 1.39972 1.47692 1.49836 2.15305 2.24835 2.28874 2.86219 2.94570 3.01492 3.71304 3.91583 3.96704 4.04215 4.10767 4.19046 4.48364 4.57963 4.72327 4.77625 4.84177 4.86184 5.01310 5.11848 5.17028 5.23550 5.63751 5.80976 5.98424 6.09250 6.39157 6.56852 6.68187 6.92959 6.98268 7.14111 8.79314 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039455 B = 0.003416 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.491255 B = 8194.872738 C = 8701.517378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.228 1.228 6 H -0.277 1.277 7 C -0.549 4.549 8 H 0.024 0.976 9 C 0.238 3.762 10 N -0.342 5.342 11 C 0.065 3.935 12 C -0.293 4.293 13 C 0.259 3.741 14 N -0.613 5.613 15 C 0.576 3.424 16 O -0.534 6.534 17 C 0.052 3.948 18 C -0.112 4.112 19 C -0.076 4.076 20 C -0.129 4.129 21 C 0.088 3.912 22 N -0.488 5.488 23 N -0.347 5.347 24 H 0.273 0.727 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.216 0.784 28 H 0.172 0.828 29 H 0.425 0.575 30 H 0.151 0.849 31 H 0.181 0.819 32 H 0.184 0.816 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.256 -20.375 4.176 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.150 1.150 6 H -0.203 1.203 7 C -0.587 4.587 8 H 0.042 0.958 9 C 0.119 3.881 10 N -0.124 5.124 11 C -0.083 4.083 12 C -0.324 4.324 13 C 0.005 3.995 14 N -0.261 5.261 15 C 0.363 3.637 16 O -0.409 6.409 17 C -0.084 4.084 18 C -0.133 4.133 19 C -0.102 4.102 20 C -0.148 4.148 21 C -0.072 4.072 22 N -0.200 5.200 23 N -0.178 5.178 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.063 0.937 27 H 0.232 0.768 28 H 0.189 0.811 29 H 0.263 0.737 30 H 0.169 0.831 31 H 0.198 0.802 32 H 0.201 0.799 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 13.307 -18.774 4.553 23.458 hybrid contribution 0.100 -0.197 -0.340 0.405 sum 13.407 -18.971 4.213 23.609 Atomic orbital electron populations 1.70056 1.08647 1.28855 1.50615 1.25954 0.95799 1.03636 0.93129 0.85587 0.79926 0.77023 0.79635 1.19077 1.15026 1.20273 1.21243 0.90575 0.93732 1.53191 0.95751 1.19938 0.94124 0.74203 0.99846 1.48571 1.34229 1.10012 1.19590 1.23291 0.94162 0.94507 0.96352 1.21780 1.11823 0.97445 1.01368 1.19511 0.97998 0.87026 0.94974 1.42409 1.47144 1.06234 1.30287 1.18436 0.78553 0.83125 0.83571 1.90675 1.40611 1.83663 1.25949 1.20592 0.99477 0.93169 0.95185 1.22291 0.97520 0.92559 1.00944 1.22106 0.96828 0.97394 0.93871 1.22909 0.94431 1.01085 0.96412 1.23449 0.97526 0.87217 0.98993 1.67475 1.16732 1.29716 1.06106 1.77346 1.25714 0.96811 1.17916 0.91845 0.89548 0.93669 0.76760 0.81092 0.73701 0.83139 0.80172 0.79882 0.79279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 2 C 0.01 0.78 5.47 84.65 0.46 1.24 16 3 Si 0.96 41.21 27.47 68.60 1.88 43.09 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.23 -8.39 6.54 99.48 0.65 -7.74 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.55 -32.43 9.79 25.60 0.25 -32.18 16 8 H 0.02 1.68 8.06 -2.91 -0.02 1.66 16 9 C 0.24 11.26 5.33 85.63 0.46 11.72 16 10 N -0.34 -15.87 3.67 -351.86 -1.29 -17.16 16 11 C 0.06 2.46 11.43 83.52 0.95 3.42 16 12 C -0.29 -11.64 9.60 22.11 0.21 -11.43 16 13 C 0.26 11.21 8.10 133.36 1.08 12.29 16 14 N -0.61 -22.39 5.43 -309.87 -1.68 -24.08 16 15 C 0.58 18.98 7.78 86.87 0.68 19.66 16 16 O -0.53 -19.20 13.45 -3.83 -0.05 -19.25 16 17 C 0.05 1.33 6.75 41.90 0.28 1.61 16 18 C -0.11 -2.07 9.63 22.61 0.22 -1.85 16 19 C -0.08 -0.78 10.17 22.44 0.23 -0.55 16 20 C -0.13 -1.09 10.11 22.44 0.23 -0.86 16 21 C 0.09 1.25 11.18 84.82 0.95 2.20 16 22 N -0.49 -11.35 9.54 -184.92 -1.76 -13.11 16 23 N -0.35 -17.14 12.42 -54.49 -0.68 -17.82 16 24 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 25 H 0.09 3.51 7.12 -2.39 -0.02 3.49 16 26 H 0.05 2.06 7.57 -2.39 -0.02 2.04 16 27 H 0.22 5.84 8.06 -2.91 -0.02 5.82 16 28 H 0.17 6.42 5.91 -2.91 -0.02 6.40 16 29 H 0.43 14.52 8.15 -92.71 -0.76 13.77 16 30 H 0.15 2.67 7.64 -2.91 -0.02 2.65 16 31 H 0.18 0.48 8.06 -2.91 -0.02 0.45 16 32 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 33 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -81.40 297.04 3.06 -78.34 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.35 Total: 23.48 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 6.00 Total: 5.27 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -5.12 Total: -130.93 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.88 Total: 43.09 kcal Total: -81.40 3.06 -78.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117713536.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.921 kcal (2) G-P(sol) polarization free energy of solvation -81.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds