Wall clock time and date at job start Mon Mar 30 2020 00:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99839 * 2 1 4 4 H 1.48504 * 109.46937 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47297 * 29.99956 * 3 2 1 6 6 H 1.48502 * 109.47003 * 150.00276 * 3 2 1 7 7 C 1.37876 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00019 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99830 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47073 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97398 * 125.00297 * 10 9 7 12 12 C 1.35237 * 107.86532 * 179.71749 * 11 10 9 13 13 C 1.40425 * 107.86943 * 0.24298 * 12 11 10 14 14 N 1.40065 * 125.97662 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00075 * 359.97438 * 14 13 12 16 16 O 1.21529 * 120.00089 * 359.97438 * 15 14 13 17 17 C 1.48113 * 120.00001 * 180.02562 * 15 14 13 18 18 C 1.39834 * 120.92056 * 359.71275 * 17 15 14 19 19 C 1.38145 * 118.99631 * 179.79797 * 18 17 15 20 20 N 1.31825 * 120.89694 * 0.49531 * 19 18 17 21 21 C 1.31809 * 122.04876 * 359.73276 * 20 19 18 22 22 C 1.38144 * 120.90297 * 0.02936 * 21 20 19 23 23 N 1.31243 * 108.04425 * 359.97438 * 13 12 11 24 24 H 0.97000 * 120.00023 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46811 * 60.00209 * 9 7 2 26 26 H 1.09000 * 109.47448 * 300.00403 * 9 7 2 27 27 H 1.08002 * 126.06889 * 359.97438 * 11 10 9 28 28 H 1.08006 * 126.06167 * 180.26558 * 12 11 10 29 29 H 0.96998 * 119.99894 * 179.97438 * 14 13 12 30 30 H 1.08000 * 120.50461 * 0.02847 * 18 17 15 31 31 H 1.08001 * 119.55529 * 180.22690 * 19 18 17 32 32 H 1.08004 * 119.55110 * 180.02562 * 21 20 19 33 33 H 1.07998 * 120.50113 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 4.8545 -3.1133 -0.8977 12 6 5.0607 -4.4040 -0.5507 13 6 4.2985 -4.6682 0.5988 14 7 4.2314 -5.8911 1.2784 15 6 4.9410 -6.9480 0.8357 16 8 5.6387 -6.8401 -0.1535 17 6 4.8696 -8.2412 1.5541 18 6 4.0769 -8.3855 2.6970 19 6 4.0364 -9.6109 3.3336 20 7 4.7388 -10.6313 2.8829 21 6 5.5019 -10.5369 1.8123 22 6 5.5976 -9.3501 1.1118 23 7 3.6600 -3.5689 0.9247 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8746 -0.6800 -0.8911 27 1 5.2985 -2.6025 -1.7393 28 1 5.6987 -5.1068 -1.0660 29 1 3.6743 -5.9773 2.0678 30 1 3.5021 -7.5526 3.0743 31 1 3.4243 -9.7334 4.2149 32 1 6.0600 -11.3990 1.4782 33 1 6.2251 -9.2798 0.2357 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117715765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:01 Heat of formation + Delta-G solvation = 94.955361 kcal Electronic energy + Delta-G solvation = -19147.829660 eV Core-core repulsion = 15983.130167 eV Total energy + Delta-G solvation = -3164.699493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.11207 -40.40505 -38.99867 -35.05558 -33.52981 -32.86650 -31.63313 -31.17140 -29.50526 -27.37108 -25.27416 -23.81552 -22.71892 -21.77608 -20.45976 -19.81584 -18.20367 -17.18944 -16.83074 -16.39064 -16.02047 -15.58211 -15.44256 -15.29768 -14.48848 -14.18897 -14.06869 -13.90026 -13.61305 -13.14219 -12.59725 -12.43287 -12.23215 -12.04148 -11.24894 -10.84291 -10.75035 -10.33555 -10.23863 -10.07777 -10.04653 -9.72044 -9.58657 -9.55993 -8.80649 -8.30562 -7.64267 -6.27480 -4.30323 0.36343 0.73783 2.34688 2.50249 2.79128 3.12488 3.19287 3.21075 3.41451 3.60836 3.69174 4.07316 4.19236 4.26782 4.43096 4.60272 4.72190 4.99828 5.13685 5.31074 5.39737 5.48088 5.59584 5.69015 6.04049 6.22771 6.29663 6.34541 6.44986 6.59358 7.16725 7.20369 7.42452 7.54487 7.72589 7.98957 8.27950 8.44822 8.81624 9.27108 10.85152 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039267 B = 0.003391 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.903752 B = 8255.802175 C = 8766.732738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.316 5.316 11 C 0.053 3.947 12 C -0.283 4.283 13 C 0.257 3.743 14 N -0.621 5.621 15 C 0.563 3.437 16 O -0.506 6.506 17 C -0.080 4.080 18 C -0.141 4.141 19 C 0.098 3.902 20 N -0.471 5.471 21 C 0.096 3.904 22 C -0.113 4.113 23 N -0.293 5.293 24 H 0.269 0.731 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.171 0.829 28 H 0.162 0.838 29 H 0.412 0.588 30 H 0.142 0.858 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.947 -15.651 3.770 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.098 5.098 11 C -0.096 4.096 12 C -0.314 4.314 13 C 0.003 3.997 14 N -0.268 5.268 15 C 0.349 3.651 16 O -0.380 6.380 17 C -0.091 4.091 18 C -0.162 4.162 19 C -0.059 4.059 20 N -0.181 5.181 21 C -0.061 4.061 22 C -0.134 4.134 23 N -0.123 5.123 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.188 0.812 28 H 0.180 0.820 29 H 0.249 0.751 30 H 0.160 0.840 31 H 0.181 0.819 32 H 0.181 0.819 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.381 -15.553 4.316 19.191 hybrid contribution 0.459 1.458 -0.621 1.650 sum 10.840 -14.095 3.696 18.162 Atomic orbital electron populations 1.69872 1.06166 1.27363 1.48985 1.24834 0.94876 0.98817 0.94198 0.86903 0.80427 0.83801 0.78955 1.19672 1.20495 1.18855 1.21096 0.87725 0.95741 1.52886 0.89635 1.20081 0.97530 0.72837 0.98308 1.48654 1.32297 1.10238 1.18604 1.22578 0.95816 0.94618 0.96632 1.21543 1.11366 0.96960 1.01493 1.19039 0.99285 0.86497 0.94839 1.42247 1.46642 1.07616 1.30324 1.18066 0.79869 0.82872 0.84271 1.90725 1.39058 1.83184 1.24989 1.20247 0.98617 0.94143 0.96096 1.22454 0.98544 1.00045 0.95139 1.22794 0.96140 0.87910 0.99055 1.67578 1.05531 1.32356 1.12594 1.22836 0.95507 0.96992 0.90792 1.22340 0.97996 0.92248 1.00802 1.77408 1.23333 0.95547 1.16059 0.92126 0.93921 0.93222 0.81194 0.82037 0.75135 0.83984 0.81878 0.81859 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.96 55.43 0.77 -25.50 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 19.81 27.47 -169.99 -4.67 15.14 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 7 C -0.54 -14.90 9.79 -34.44 -0.34 -15.24 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 9 C 0.23 5.36 5.33 -5.20 -0.03 5.33 16 10 N -0.32 -6.99 3.67 -62.56 -0.23 -7.22 16 11 C 0.05 0.99 11.43 -17.24 -0.20 0.79 16 12 C -0.28 -5.31 9.60 -39.83 -0.38 -5.70 16 13 C 0.26 4.96 8.11 -154.46 -1.25 3.71 16 14 N -0.62 -9.28 5.40 -11.92 -0.06 -9.34 16 15 C 0.56 7.93 7.76 -12.21 -0.09 7.83 16 16 O -0.51 -8.41 13.57 5.34 0.07 -8.33 16 17 C -0.08 -0.86 5.91 -104.65 -0.62 -1.48 16 18 C -0.14 -1.22 9.62 -39.02 -0.38 -1.59 16 19 C 0.10 0.81 11.17 -17.59 -0.20 0.61 16 20 N -0.47 -4.54 10.34 -13.30 -0.14 -4.67 16 21 C 0.10 0.80 11.17 -17.60 -0.20 0.60 16 22 C -0.11 -1.07 9.68 -39.02 -0.38 -1.45 16 23 N -0.29 -6.53 12.42 31.43 0.39 -6.14 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 26 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 27 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 28 H 0.16 2.92 5.91 -52.48 -0.31 2.61 16 29 H 0.41 4.96 6.97 -40.82 -0.28 4.68 16 30 H 0.14 0.92 6.54 -52.49 -0.34 0.58 16 31 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.16 0.88 8.06 -52.48 -0.42 0.45 16 33 H 0.15 1.30 7.74 -52.49 -0.41 0.90 16 LS Contribution 295.02 15.07 4.45 4.45 Total: -1.00 -34.14 295.02 -6.54 -40.67 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -2.97 Total: 5.49 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -4.15 Total: -4.55 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.73 Total: -52.87 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.07 Total: -8.33 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.67 Total: 15.14 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.14 -6.54 -40.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117715765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.630 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds