Wall clock time and date at job start Mon Mar 30 2020 00:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99839 * 2 1 4 4 H 1.48504 * 109.46937 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47297 * 29.99956 * 3 2 1 6 6 H 1.48502 * 109.47003 * 150.00276 * 3 2 1 7 7 C 1.37876 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00019 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99830 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47073 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97398 * 125.00297 * 10 9 7 12 12 C 1.35237 * 107.86532 * 179.71749 * 11 10 9 13 13 C 1.40425 * 107.86943 * 0.24298 * 12 11 10 14 14 N 1.40065 * 125.97662 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00075 * 359.97438 * 14 13 12 16 16 O 1.21529 * 120.00089 * 359.97438 * 15 14 13 17 17 C 1.48113 * 120.00001 * 180.02562 * 15 14 13 18 18 C 1.39834 * 120.92056 * 359.71275 * 17 15 14 19 19 C 1.38145 * 118.99631 * 179.79797 * 18 17 15 20 20 N 1.31825 * 120.89694 * 0.49531 * 19 18 17 21 21 C 1.31809 * 122.04876 * 359.73276 * 20 19 18 22 22 C 1.38144 * 120.90297 * 0.02936 * 21 20 19 23 23 N 1.31243 * 108.04425 * 359.97438 * 13 12 11 24 24 H 0.97000 * 120.00023 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46811 * 60.00209 * 9 7 2 26 26 H 1.09000 * 109.47448 * 300.00403 * 9 7 2 27 27 H 1.08002 * 126.06889 * 359.97438 * 11 10 9 28 28 H 1.08006 * 126.06167 * 180.26558 * 12 11 10 29 29 H 0.96998 * 119.99894 * 179.97438 * 14 13 12 30 30 H 1.08000 * 120.50461 * 0.02847 * 18 17 15 31 31 H 1.08001 * 119.55529 * 180.22690 * 19 18 17 32 32 H 1.08004 * 119.55110 * 180.02562 * 21 20 19 33 33 H 1.07998 * 120.50113 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 4.8545 -3.1133 -0.8977 12 6 5.0607 -4.4040 -0.5507 13 6 4.2985 -4.6682 0.5988 14 7 4.2314 -5.8911 1.2784 15 6 4.9410 -6.9480 0.8357 16 8 5.6387 -6.8401 -0.1535 17 6 4.8696 -8.2412 1.5541 18 6 4.0769 -8.3855 2.6970 19 6 4.0364 -9.6109 3.3336 20 7 4.7388 -10.6313 2.8829 21 6 5.5019 -10.5369 1.8123 22 6 5.5976 -9.3501 1.1118 23 7 3.6600 -3.5689 0.9247 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8746 -0.6800 -0.8911 27 1 5.2985 -2.6025 -1.7393 28 1 5.6987 -5.1068 -1.0660 29 1 3.6743 -5.9773 2.0678 30 1 3.5021 -7.5526 3.0743 31 1 3.4243 -9.7334 4.2149 32 1 6.0600 -11.3990 1.4782 33 1 6.2251 -9.2798 0.2357 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117715765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:01 Heat of formation + Delta-G solvation = 70.885478 kcal Electronic energy + Delta-G solvation = -19148.873408 eV Core-core repulsion = 15983.130167 eV Total energy + Delta-G solvation = -3165.743241 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.39261 -41.45992 -40.07974 -36.41987 -35.30373 -33.94313 -32.92872 -32.21454 -31.03342 -29.11257 -26.34461 -24.63903 -24.28595 -22.99383 -21.91536 -21.14530 -19.23982 -19.12512 -18.23149 -17.53408 -16.76661 -16.70086 -16.69723 -16.51075 -16.09911 -15.44357 -15.10382 -14.81457 -14.72990 -14.62530 -14.34940 -13.90674 -13.87452 -13.03165 -12.71657 -12.54740 -12.37040 -11.85204 -11.71023 -11.54718 -11.29087 -11.04703 -10.87519 -10.56730 -10.21284 -9.83758 -9.18276 -8.38169 -6.48788 -0.47008 0.08189 0.98368 1.19897 1.36832 1.40672 1.49745 1.51555 2.16365 2.21359 2.28698 2.82441 2.94541 3.26780 3.50333 3.74265 3.89233 3.90779 4.03578 4.16669 4.50425 4.58629 4.66679 4.75743 4.80469 4.84314 4.85253 4.95315 5.11824 5.23362 5.58526 5.78954 5.97469 6.08656 6.37667 6.56906 6.80157 6.87894 6.96122 7.14305 8.78895 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039267 B = 0.003391 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.903752 B = 8255.802175 C = 8766.732738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.238 1.238 7 C -0.548 4.548 8 H 0.027 0.973 9 C 0.238 3.762 10 N -0.342 5.342 11 C 0.063 3.937 12 C -0.294 4.294 13 C 0.261 3.739 14 N -0.617 5.617 15 C 0.566 3.434 16 O -0.534 6.534 17 C -0.097 4.097 18 C -0.138 4.138 19 C 0.097 3.903 20 N -0.487 5.487 21 C 0.098 3.902 22 C -0.116 4.116 23 N -0.343 5.343 24 H 0.272 0.728 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.213 0.787 28 H 0.170 0.830 29 H 0.424 0.576 30 H 0.160 0.840 31 H 0.192 0.808 32 H 0.193 0.807 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.923 -15.658 3.889 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.586 4.586 8 H 0.045 0.955 9 C 0.119 3.881 10 N -0.124 5.124 11 C -0.085 4.085 12 C -0.325 4.325 13 C 0.007 3.993 14 N -0.267 5.267 15 C 0.354 3.646 16 O -0.409 6.409 17 C -0.108 4.108 18 C -0.158 4.158 19 C -0.059 4.059 20 N -0.197 5.197 21 C -0.058 4.058 22 C -0.137 4.137 23 N -0.174 5.174 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.230 0.770 28 H 0.187 0.813 29 H 0.262 0.738 30 H 0.178 0.822 31 H 0.209 0.791 32 H 0.210 0.790 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.371 -15.609 4.450 20.408 hybrid contribution -0.188 1.235 -0.640 1.403 sum 12.183 -14.374 3.810 19.224 Atomic orbital electron populations 1.70051 1.08594 1.28835 1.50605 1.25924 0.95760 1.03553 0.93183 0.85614 0.79517 0.77169 0.80071 1.17745 1.20700 1.16155 1.21230 0.90501 0.93757 1.53148 0.95507 1.19921 0.94178 0.74224 0.99792 1.48548 1.33875 1.10066 1.19891 1.23286 0.94123 0.94589 0.96474 1.21774 1.11706 0.97417 1.01591 1.19416 0.97929 0.87091 0.94894 1.42365 1.47150 1.06540 1.30604 1.18605 0.78659 0.83412 0.83874 1.90690 1.40149 1.83736 1.26321 1.20092 1.00733 0.92746 0.97237 1.22660 0.97909 1.00996 0.94222 1.23272 0.95819 0.87233 0.99577 1.67656 1.05976 1.32974 1.13072 1.23273 0.95084 0.97378 0.90086 1.22479 0.97849 0.92277 1.01105 1.77323 1.25487 0.96768 1.17782 0.91863 0.93506 0.89900 0.77002 0.81260 0.73757 0.82249 0.79087 0.79007 0.82790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 2 C 0.01 0.82 5.47 84.65 0.46 1.29 16 3 Si 0.96 40.07 27.47 68.60 1.88 41.95 16 4 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.24 -8.96 6.54 99.48 0.65 -8.31 16 7 C -0.55 -31.26 9.79 25.60 0.25 -31.00 16 8 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 9 C 0.24 10.81 5.33 85.63 0.46 11.27 16 10 N -0.34 -15.00 3.67 -351.84 -1.29 -16.29 16 11 C 0.06 2.27 11.43 83.52 0.95 3.22 16 12 C -0.29 -10.88 9.60 22.11 0.21 -10.67 16 13 C 0.26 10.17 8.11 133.35 1.08 11.25 16 14 N -0.62 -18.47 5.40 -309.90 -1.67 -20.15 16 15 C 0.57 15.78 7.76 86.87 0.67 16.45 16 16 O -0.53 -17.63 13.57 -3.81 -0.05 -17.69 16 17 C -0.10 -2.00 5.91 -19.88 -0.12 -2.12 16 18 C -0.14 -2.16 9.62 22.63 0.22 -1.94 16 19 C 0.10 1.39 11.17 84.67 0.95 2.34 16 20 N -0.49 -8.33 10.34 -196.00 -2.03 -10.35 16 21 C 0.10 1.45 11.17 84.67 0.95 2.39 16 22 C -0.12 -2.05 9.68 22.63 0.22 -1.84 16 23 N -0.34 -15.61 12.42 -54.49 -0.68 -16.29 16 24 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 25 H 0.05 2.07 7.20 -2.38 -0.02 2.06 16 26 H 0.08 3.20 7.50 -2.39 -0.02 3.19 16 27 H 0.21 5.46 8.06 -2.91 -0.02 5.43 16 28 H 0.17 5.99 5.91 -2.91 -0.02 5.97 16 29 H 0.42 10.20 6.97 -92.71 -0.65 9.56 16 30 H 0.16 1.83 6.54 -2.91 -0.02 1.81 16 31 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.15 2.54 7.74 -2.91 -0.02 2.51 16 Total: -1.00 -77.38 295.02 3.23 -74.15 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.46 Total: 21.29 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 6.30 Total: 0.65 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -5.37 Total: -120.35 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.05 Total: -17.69 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.88 Total: 41.95 kcal Total: -77.38 3.23 -74.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117715765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.031 kcal (2) G-P(sol) polarization free energy of solvation -77.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds