Wall clock time and date at job start Mon Mar 30 2020 01:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99992 * 2 1 4 4 H 1.48507 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47440 * 299.99951 * 3 2 1 6 6 H 1.48494 * 109.47065 * 60.00199 * 3 2 1 7 7 C 1.37881 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00137 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99726 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47099 * 179.97438 * 9 7 2 11 11 C 1.35978 * 117.00247 * 179.97438 * 10 9 7 12 12 C 1.39192 * 119.91132 * 0.02562 * 11 10 9 13 13 C 1.37768 * 120.59276 * 179.97438 * 12 11 10 14 14 C 1.38882 * 120.09515 * 0.23745 * 13 12 11 15 15 O 1.35048 * 133.21795 * 180.49640 * 14 13 12 16 16 C 1.34274 * 110.96434 * 179.58680 * 15 14 13 17 17 C 1.34381 * 109.71053 * 359.78205 * 16 15 14 18 18 C 1.40636 * 119.43331 * 359.54028 * 14 13 12 19 19 C 1.38128 * 119.91357 * 179.97438 * 11 10 9 20 20 C 1.50547 * 124.93368 * 179.80924 * 17 16 15 21 21 C 1.53400 * 108.44505 * 343.78056 * 20 17 16 22 22 C 1.53145 * 109.26198 * 49.33200 * 21 20 17 23 23 C 1.51182 * 126.77422 * 179.74956 * 16 15 14 24 24 H 0.96999 * 120.00287 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47462 * 59.99792 * 9 7 2 26 26 H 1.08998 * 109.46889 * 299.99731 * 9 7 2 27 27 H 1.08000 * 119.70481 * 359.95527 * 12 11 10 28 28 H 1.08002 * 119.94831 * 179.97438 * 13 12 11 29 29 H 1.08001 * 120.17689 * 0.06015 * 19 11 10 30 30 H 1.09001 * 109.64392 * 103.46885 * 20 17 16 31 31 H 1.09004 * 109.64185 * 223.88724 * 20 17 16 32 32 H 1.09003 * 109.50835 * 169.26419 * 21 20 17 33 33 H 1.08992 * 109.51049 * 289.39214 * 21 20 17 34 34 H 1.09003 * 109.46262 * 50.13700 * 22 21 20 35 35 H 1.09001 * 109.45761 * 170.09707 * 22 21 20 36 36 H 1.09003 * 109.62385 * 43.41183 * 23 16 15 37 37 H 1.09000 * 109.78208 * 282.93764 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.6598 -4.8419 0.0011 12 6 0.2797 -5.0222 0.0011 13 6 -0.2620 -6.2889 0.0011 14 6 0.5690 -7.4016 0.0061 15 8 0.3339 -8.7315 -0.0012 16 6 1.4850 -9.4229 -0.0002 17 6 2.5249 -8.5718 0.0028 18 6 1.9639 -7.2225 0.0013 19 6 2.5029 -5.9360 0.0006 20 6 3.9737 -8.9809 0.0088 21 6 4.0595 -10.4570 0.4171 22 6 3.0704 -11.2715 -0.4216 23 6 1.6373 -10.9270 -0.0016 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 -0.3725 -4.1613 0.0013 28 1 -1.3344 -6.4167 0.0015 29 1 3.5739 -5.7962 0.0007 30 1 4.3951 -8.8514 -0.9881 31 1 4.5246 -8.3676 0.7219 32 1 5.0713 -10.8241 0.2448 33 1 3.8102 -10.5576 1.4734 34 1 3.2068 -11.0337 -1.4766 35 1 3.2495 -12.3350 -0.2632 36 1 0.9331 -11.3656 -0.7087 37 1 1.4446 -11.3182 0.9974 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123368233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:27 Heat of formation + Delta-G solvation = -33.082569 kcal Electronic energy + Delta-G solvation = -19860.035787 eV Core-core repulsion = 16761.031746 eV Total energy + Delta-G solvation = -3099.004041 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.27635 -38.86709 -37.27679 -35.88628 -32.92169 -32.20580 -30.59909 -29.47026 -28.40948 -27.30243 -24.32801 -23.16796 -22.68348 -21.69278 -20.78397 -19.15100 -17.45052 -16.83792 -16.68689 -16.13516 -15.59424 -15.04625 -14.67899 -14.51858 -14.28865 -14.03888 -13.80357 -13.45555 -12.89998 -12.81605 -12.59433 -12.38363 -12.31439 -11.74556 -11.70807 -11.12762 -11.09824 -10.98135 -10.97818 -10.76885 -10.42618 -10.15779 -10.00953 -9.54078 -9.27972 -8.60496 -7.81080 -7.34935 -6.26472 -4.29947 1.16151 1.86842 2.50694 2.84090 3.22354 3.29044 3.35008 4.07344 4.11306 4.34250 4.56169 4.60353 4.62276 4.87551 4.90740 5.11021 5.11551 5.22260 5.27896 5.35032 5.42564 5.58066 5.64831 5.69781 5.75930 5.82425 5.86612 5.89460 6.07460 6.24929 6.39410 6.55671 6.64643 6.72959 6.92855 6.96119 7.12435 7.44740 7.67023 7.93714 8.44765 8.83097 9.35424 10.84889 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.042346 B = 0.003471 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.063926 B = 8065.168226 C = 8672.428380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.524 4.524 8 H 0.071 0.929 9 C 0.191 3.809 10 O -0.315 6.315 11 C 0.143 3.857 12 C -0.174 4.174 13 C -0.069 4.069 14 C 0.000 4.000 15 O -0.195 6.195 16 C 0.024 3.976 17 C -0.181 4.181 18 C -0.081 4.081 19 C -0.135 4.135 20 C -0.048 4.048 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.039 4.039 24 H 0.267 0.733 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.147 0.853 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.667 -21.139 -0.008 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.561 4.561 8 H 0.089 0.911 9 C 0.118 3.882 10 O -0.228 6.228 11 C 0.095 3.905 12 C -0.193 4.193 13 C -0.087 4.087 14 C -0.046 4.046 15 O -0.098 6.098 16 C -0.024 4.024 17 C -0.182 4.182 18 C -0.082 4.082 19 C -0.154 4.154 20 C -0.085 4.085 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.075 4.075 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.165 0.835 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.450 -21.031 -0.010 21.312 hybrid contribution -0.010 1.160 0.004 1.160 sum 3.440 -19.872 -0.006 20.167 Atomic orbital electron populations 1.69951 1.06133 1.27541 1.49643 1.24939 0.95055 0.99567 0.94668 0.86190 0.79992 0.82046 0.77776 1.19334 1.20654 1.20659 1.21014 0.94340 0.88692 1.52099 0.91050 1.20682 0.88732 0.81840 0.96901 1.86150 1.38825 1.11445 1.86373 1.18946 0.91155 0.86598 0.93834 1.21319 0.95034 0.97146 1.05779 1.19627 0.98763 0.88063 1.02291 1.19429 0.94132 0.81896 1.09115 1.83809 1.32299 1.16332 1.77325 1.22181 0.82771 0.94411 1.02991 1.20645 0.96031 0.90490 1.11043 1.19185 0.92531 0.92778 1.03701 1.19521 0.99617 0.88082 1.08201 1.20018 0.90885 0.95608 1.02034 1.21651 0.99376 0.94682 1.00177 1.21591 0.92854 1.00139 1.00782 1.20294 0.98412 0.85636 1.03207 0.92360 0.96008 0.95995 0.83535 0.85313 0.85305 0.90785 0.90577 0.91103 0.91486 0.91122 0.90530 0.89705 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.95 9.43 -34.44 -0.32 -15.28 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.07 4.49 36.01 0.16 5.23 16 10 O -0.31 -7.72 10.12 -19.67 -0.20 -7.92 16 11 C 0.14 3.01 6.68 -39.27 -0.26 2.75 16 12 C -0.17 -3.37 9.01 -39.40 -0.36 -3.73 16 13 C -0.07 -1.18 10.05 -39.51 -0.40 -1.58 16 14 C 0.00 0.00 7.41 -38.44 -0.28 -0.28 16 15 O -0.19 -3.16 10.58 3.70 0.04 -3.12 16 16 C 0.02 0.33 7.17 -35.43 -0.25 0.08 16 17 C -0.18 -2.62 6.14 -102.90 -0.63 -3.26 16 18 C -0.08 -1.43 6.40 -105.37 -0.67 -2.10 16 19 C -0.14 -2.56 10.03 -39.16 -0.39 -2.95 16 20 C -0.05 -0.53 6.29 -27.75 -0.17 -0.71 16 21 C -0.12 -0.98 5.93 -26.45 -0.16 -1.14 16 22 C -0.12 -0.85 5.89 -26.52 -0.16 -1.00 16 23 C -0.04 -0.34 6.30 -27.51 -0.17 -0.52 16 24 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.02 0.60 7.65 -51.93 -0.40 0.20 16 26 H 0.02 0.60 7.65 -51.93 -0.40 0.20 16 27 H 0.15 2.87 6.26 -52.49 -0.33 2.54 16 28 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 29 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.55 8.12 -51.93 -0.42 0.12 16 34 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -30.93 310.41 -8.83 -39.76 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -4.89 Total: -1.66 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -4.17 Total: -22.90 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.74 Total: -25.06 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.16 Total: -11.04 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.93 -8.83 -39.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123368233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.679 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds