Wall clock time and date at job start Mon Mar 30 2020 01:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99992 * 2 1 4 4 H 1.48507 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47440 * 299.99951 * 3 2 1 6 6 H 1.48494 * 109.47065 * 60.00199 * 3 2 1 7 7 C 1.37881 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00137 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99726 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47099 * 179.97438 * 9 7 2 11 11 C 1.35978 * 117.00247 * 179.97438 * 10 9 7 12 12 C 1.39192 * 119.91132 * 0.02562 * 11 10 9 13 13 C 1.37768 * 120.59276 * 179.97438 * 12 11 10 14 14 C 1.38882 * 120.09515 * 0.23745 * 13 12 11 15 15 O 1.35048 * 133.21795 * 180.49640 * 14 13 12 16 16 C 1.34274 * 110.96434 * 179.58680 * 15 14 13 17 17 C 1.34381 * 109.71053 * 359.78205 * 16 15 14 18 18 C 1.40636 * 119.43331 * 359.54028 * 14 13 12 19 19 C 1.38128 * 119.91357 * 179.97438 * 11 10 9 20 20 C 1.50547 * 124.93368 * 179.80924 * 17 16 15 21 21 C 1.53400 * 108.44505 * 343.78056 * 20 17 16 22 22 C 1.53145 * 109.26198 * 49.33200 * 21 20 17 23 23 C 1.51182 * 126.77422 * 179.74956 * 16 15 14 24 24 H 0.96999 * 120.00287 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47462 * 59.99792 * 9 7 2 26 26 H 1.08998 * 109.46889 * 299.99731 * 9 7 2 27 27 H 1.08000 * 119.70481 * 359.95527 * 12 11 10 28 28 H 1.08002 * 119.94831 * 179.97438 * 13 12 11 29 29 H 1.08001 * 120.17689 * 0.06015 * 19 11 10 30 30 H 1.09001 * 109.64392 * 103.46885 * 20 17 16 31 31 H 1.09004 * 109.64185 * 223.88724 * 20 17 16 32 32 H 1.09003 * 109.50835 * 169.26419 * 21 20 17 33 33 H 1.08992 * 109.51049 * 289.39214 * 21 20 17 34 34 H 1.09003 * 109.46262 * 50.13700 * 22 21 20 35 35 H 1.09001 * 109.45761 * 170.09707 * 22 21 20 36 36 H 1.09003 * 109.62385 * 43.41183 * 23 16 15 37 37 H 1.09000 * 109.78208 * 282.93764 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.6598 -4.8419 0.0011 12 6 0.2797 -5.0222 0.0011 13 6 -0.2620 -6.2889 0.0011 14 6 0.5690 -7.4016 0.0061 15 8 0.3339 -8.7315 -0.0012 16 6 1.4850 -9.4229 -0.0002 17 6 2.5249 -8.5718 0.0028 18 6 1.9639 -7.2225 0.0013 19 6 2.5029 -5.9360 0.0006 20 6 3.9737 -8.9809 0.0088 21 6 4.0595 -10.4570 0.4171 22 6 3.0704 -11.2715 -0.4216 23 6 1.6373 -10.9270 -0.0016 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 -0.3725 -4.1613 0.0013 28 1 -1.3344 -6.4167 0.0015 29 1 3.5739 -5.7962 0.0007 30 1 4.3951 -8.8514 -0.9881 31 1 4.5246 -8.3676 0.7219 32 1 5.0713 -10.8241 0.2448 33 1 3.8102 -10.5576 1.4734 34 1 3.2068 -11.0337 -1.4766 35 1 3.2495 -12.3350 -0.2632 36 1 0.9331 -11.3656 -0.7087 37 1 1.4446 -11.3182 0.9974 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123368233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:26 Heat of formation + Delta-G solvation = -49.701439 kcal Electronic energy + Delta-G solvation = -19860.756435 eV Core-core repulsion = 16761.031746 eV Total energy + Delta-G solvation = -3099.724690 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.53770 -40.53312 -38.13805 -37.46683 -35.05267 -33.37079 -31.67907 -30.83441 -29.68891 -29.23038 -25.56360 -24.94881 -23.80775 -22.86272 -22.12557 -20.21757 -19.16732 -18.64797 -18.03432 -17.40465 -16.94733 -16.83541 -16.44647 -15.96956 -15.54811 -15.07656 -14.74923 -14.54728 -14.27820 -14.06078 -13.99790 -13.58239 -13.48387 -13.38316 -13.11873 -12.97530 -12.79658 -12.31099 -11.98300 -11.89129 -11.66225 -11.62565 -11.41410 -11.32721 -10.82632 -10.71287 -9.10327 -8.90610 -8.40735 -6.54784 -0.19272 0.35068 1.29989 1.39127 1.40413 1.55004 1.64346 2.24859 2.61592 2.61826 2.94188 3.45282 3.56356 3.82937 3.88914 4.01698 4.05421 4.14047 4.20903 4.36972 4.41760 4.57223 4.61655 4.67072 4.79935 4.88440 4.93985 4.95668 5.02543 5.11105 5.16991 5.17893 5.23830 5.27328 5.45434 5.46080 5.51830 5.61020 5.81336 6.14353 6.47393 6.74686 7.17046 8.71729 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.042346 B = 0.003471 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.063926 B = 8065.168226 C = 8672.428380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.988 3.012 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.558 4.558 8 H 0.066 0.934 9 C 0.209 3.791 10 O -0.334 6.334 11 C 0.107 3.893 12 C -0.189 4.189 13 C -0.058 4.058 14 C -0.010 4.010 15 O -0.199 6.199 16 C 0.033 3.967 17 C -0.199 4.199 18 C -0.093 4.093 19 C -0.136 4.136 20 C -0.051 4.051 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.039 4.039 24 H 0.274 0.726 25 H 0.005 0.995 26 H 0.006 0.994 27 H 0.136 0.864 28 H 0.159 0.841 29 H 0.136 0.864 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.442 -23.404 0.008 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.595 4.595 8 H 0.084 0.916 9 C 0.136 3.864 10 O -0.248 6.248 11 C 0.060 3.940 12 C -0.207 4.207 13 C -0.076 4.076 14 C -0.057 4.057 15 O -0.102 6.102 16 C -0.015 4.015 17 C -0.200 4.200 18 C -0.094 4.094 19 C -0.155 4.155 20 C -0.088 4.088 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.076 4.076 24 H 0.083 0.917 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.154 0.846 28 H 0.176 0.824 29 H 0.154 0.846 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.222 -23.333 0.005 23.711 hybrid contribution -0.286 1.621 -0.001 1.646 sum 3.936 -21.711 0.004 22.065 Atomic orbital electron populations 1.70049 1.07688 1.29031 1.49489 1.25950 0.96041 1.03315 0.93427 0.85061 0.78602 0.76872 0.78435 1.18800 1.19449 1.19460 1.21343 0.94385 0.90156 1.53664 0.91594 1.20260 0.88496 0.82456 0.95223 1.86070 1.38619 1.12448 1.87680 1.19251 0.92476 0.85692 0.96542 1.21227 0.94232 0.97940 1.07328 1.19816 1.00258 0.87083 1.00484 1.19611 0.94271 0.82856 1.08922 1.83837 1.33714 1.15474 1.77196 1.23260 0.81487 0.96545 1.00213 1.21068 0.98295 0.88843 1.11815 1.19583 0.93250 0.93603 1.02928 1.19616 0.99801 0.88171 1.07890 1.20159 0.88452 0.97900 1.02296 1.21669 1.01085 0.92394 1.00354 1.21646 0.91218 1.01815 1.00327 1.20654 1.00117 0.81811 1.04999 0.91668 0.97683 0.97668 0.84638 0.82371 0.84614 0.90409 0.91090 0.88916 0.91345 0.91388 0.87288 0.87953 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.41 13.29 21.45 0.28 -54.12 16 2 C 0.01 0.70 5.46 84.66 0.46 1.16 16 3 Si 0.99 43.76 29.54 68.60 2.03 45.78 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.56 -33.12 9.43 25.60 0.24 -32.88 16 8 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 9 C 0.21 11.80 4.49 71.24 0.32 12.12 16 10 O -0.33 -17.47 10.12 -93.30 -0.94 -18.41 16 11 C 0.11 4.78 6.68 22.47 0.15 4.93 16 12 C -0.19 -7.73 9.01 22.39 0.20 -7.53 16 13 C -0.06 -2.03 10.05 22.31 0.22 -1.80 16 14 C -0.01 -0.36 7.41 23.01 0.17 -0.19 16 15 O -0.20 -6.15 10.58 -9.68 -0.10 -6.25 16 16 C 0.03 0.82 7.17 24.96 0.18 1.00 16 17 C -0.20 -5.53 6.14 -18.75 -0.12 -5.65 16 18 C -0.09 -3.29 6.40 -20.35 -0.13 -3.42 16 19 C -0.14 -5.35 10.03 22.54 0.23 -5.13 16 20 C -0.05 -1.03 6.29 29.93 0.19 -0.85 16 21 C -0.12 -1.50 5.93 30.78 0.18 -1.31 16 22 C -0.11 -1.16 5.89 30.73 0.18 -0.98 16 23 C -0.04 -0.54 6.30 30.09 0.19 -0.35 16 24 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 25 H 0.01 0.31 7.65 -2.38 -0.02 0.29 16 26 H 0.01 0.32 7.65 -2.39 -0.02 0.30 16 27 H 0.14 5.76 6.26 -2.91 -0.02 5.74 16 28 H 0.16 4.43 8.06 -2.91 -0.02 4.40 16 29 H 0.14 4.97 8.06 -2.91 -0.02 4.95 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 34 H 0.07 0.77 8.11 -2.39 -0.02 0.75 16 35 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -69.23 310.41 5.01 -64.22 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.07 Total: 9.65 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 2.67 Total: -40.87 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.28 Total: -54.12 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -1.05 Total: -24.66 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -69.23 5.01 -64.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123368233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.518 kcal (2) G-P(sol) polarization free energy of solvation -69.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds