Wall clock time and date at job start Mon Mar 30 2020 01:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38355 * 119.45706 * 2 1 4 4 C 1.38358 * 119.30078 * 179.97438 * 3 2 1 5 5 C 1.40027 * 118.28953 * 359.97438 * 4 3 2 6 6 C 1.47819 * 120.55854 * 180.02562 * 5 4 3 7 7 O 1.21580 * 120.00253 * 359.95887 * 6 5 4 8 8 N 1.34771 * 119.99950 * 179.97438 * 6 5 4 9 9 C 1.40523 * 120.00217 * 179.97438 * 8 6 5 10 10 C 1.40664 * 126.08315 * 359.69285 * 9 8 6 11 11 N 1.30906 * 108.38796 * 179.84819 * 10 9 8 12 12 N 1.40070 * 108.41271 * 0.41037 * 11 10 9 13 13 C 1.37315 * 126.07421 * 179.73661 * 12 11 10 14 14 H 1.07992 * 120.00433 * 179.97438 * 13 12 11 15 15 C 1.38992 * 119.99449 * 359.97438 * 13 12 11 16 16 N 1.31290 * 120.00072 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00007 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47076 * 59.99761 * 17 15 13 19 19 H 1.48493 * 109.47472 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.46951 * 300.00246 * 17 15 13 21 21 C 1.35696 * 126.08827 * 180.02562 * 9 8 6 22 22 C 1.39532 * 118.87852 * 359.97438 * 5 4 3 23 23 N 1.31689 * 120.56582 * 0.02562 * 22 5 4 24 24 H 1.09005 * 109.47453 * 90.00004 * 1 2 3 25 25 H 1.08998 * 109.47460 * 210.00057 * 1 2 3 26 26 H 1.09002 * 109.47665 * 330.00221 * 1 2 3 27 27 H 1.08001 * 120.35227 * 359.72607 * 3 2 1 28 28 H 1.08001 * 120.84886 * 179.97438 * 4 3 2 29 29 H 0.97002 * 120.00383 * 0.02562 * 8 6 5 30 30 H 1.07997 * 125.80721 * 359.97438 * 10 9 8 31 31 H 0.97009 * 120.00005 * 179.97438 * 16 15 13 32 32 H 1.08000 * 126.24740 * 359.97438 * 21 9 8 33 33 H 1.08003 * 119.71303 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2009 0.0005 5 6 4.2312 -0.0339 0.0016 6 6 5.7081 -0.0965 0.0028 7 8 6.3600 0.9297 0.0021 8 7 6.3319 -1.2911 0.0044 9 6 7.7359 -1.3506 0.0049 10 6 8.6117 -0.2500 -0.0021 11 7 9.8409 -0.7003 0.0043 12 7 9.7991 -2.1004 0.0061 13 6 10.8843 -2.9417 0.0072 14 1 10.7382 -4.0117 0.0090 15 6 12.1710 -2.4160 0.0061 16 7 12.3487 -1.1152 0.0045 17 14 13.6475 -3.5604 0.0070 18 1 13.6094 -4.4184 -1.2045 19 1 14.8964 -2.7571 0.0062 20 1 13.6103 -4.4156 1.2206 21 6 8.4880 -2.4801 0.0060 22 6 3.4715 -1.2043 0.0027 23 7 2.1558 -1.1486 0.0021 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6442 2.1382 -0.0045 28 1 4.1273 2.1266 0.0001 29 1 5.8118 -2.1099 0.0043 30 1 8.3198 0.7898 -0.0092 31 1 13.2468 -0.7483 0.0041 32 1 8.1170 -3.4943 0.0069 33 1 3.9668 -2.1640 0.0039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139495205.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:22 Heat of formation + Delta-G solvation = 60.418774 kcal Electronic energy + Delta-G solvation = -19255.172005 eV Core-core repulsion = 16088.974894 eV Total energy + Delta-G solvation = -3166.197111 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.94634 -41.26823 -39.83722 -36.04652 -35.10904 -34.01216 -33.33981 -32.24858 -30.07813 -28.63366 -26.74474 -24.86728 -23.99984 -22.87042 -21.92833 -21.26556 -19.50106 -18.77399 -17.66610 -17.41582 -16.87452 -16.45655 -16.30265 -16.05887 -15.57052 -15.41658 -14.96965 -14.86051 -14.47882 -14.14381 -13.49357 -13.33527 -13.26993 -13.13214 -12.95128 -12.87383 -12.87074 -12.13746 -11.90157 -11.13598 -11.03025 -10.95090 -10.83965 -10.45024 -10.12886 -10.01442 -8.56279 -8.47553 -6.25229 -0.41143 0.19293 1.26205 1.40045 1.56686 1.60862 1.88231 1.99207 2.23681 2.44640 2.84931 2.87320 3.08877 3.21334 3.71402 3.77055 3.84512 4.01665 4.30914 4.42637 4.54776 4.65273 4.74775 4.84103 4.97094 5.00409 5.10502 5.14607 5.19752 5.27447 5.39482 5.61599 5.94330 6.28209 6.63587 6.71846 6.83961 7.26771 7.44636 7.65536 8.51667 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.062310 B = 0.003281 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.261807 B = 8533.030904 C = 8967.147113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.140 3.860 3 C -0.170 4.170 4 C -0.027 4.027 5 C -0.198 4.198 6 C 0.546 3.454 7 O -0.573 6.573 8 N -0.607 5.607 9 C -0.048 4.048 10 C -0.058 4.058 11 N -0.310 5.310 12 N -0.166 5.166 13 C -0.354 4.354 14 H 0.143 0.857 15 C -0.007 4.007 16 N -0.825 5.825 17 Si 1.020 2.980 18 H -0.253 1.253 19 H -0.278 1.278 20 H -0.253 1.253 21 C -0.078 4.078 22 C 0.140 3.860 23 N -0.505 5.505 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.176 0.824 28 H 0.144 0.856 29 H 0.418 0.582 30 H 0.168 0.832 31 H 0.277 0.723 32 H 0.191 0.809 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.178 -1.892 -0.043 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.003 3.997 3 C -0.190 4.190 4 C -0.053 4.053 5 C -0.203 4.203 6 C 0.334 3.666 7 O -0.454 6.454 8 N -0.251 5.251 9 C -0.154 4.154 10 C -0.233 4.233 11 N -0.142 5.142 12 N 0.065 4.935 13 C -0.485 4.485 14 H 0.160 0.840 15 C -0.219 4.219 16 N -0.452 5.452 17 Si 0.839 3.161 18 H -0.177 1.177 19 H -0.203 1.203 20 H -0.177 1.177 21 C -0.228 4.228 22 C -0.019 4.019 23 N -0.215 5.215 24 H 0.113 0.887 25 H 0.097 0.903 26 H 0.120 0.880 27 H 0.193 0.807 28 H 0.161 0.839 29 H 0.256 0.744 30 H 0.185 0.815 31 H 0.086 0.914 32 H 0.208 0.792 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -18.817 -1.471 -0.037 18.874 hybrid contribution 0.469 0.159 -0.012 0.496 sum -18.347 -1.312 -0.048 18.394 Atomic orbital electron populations 1.20899 0.85801 1.04944 1.04503 1.22208 0.99085 0.88012 0.90434 1.22289 0.93292 1.00987 1.02382 1.21906 0.95282 0.97516 0.90594 1.20778 0.92045 0.97123 1.10372 1.18470 0.87842 0.83015 0.77239 1.90652 1.67413 1.35304 1.52021 1.42285 1.03309 1.08827 1.70707 1.17306 0.83314 0.93002 1.21783 1.24180 0.90226 0.99762 1.09173 1.78158 1.19320 0.89184 1.27524 1.44857 1.04434 1.04043 1.40177 1.20616 0.83216 0.90657 1.54022 0.84000 1.26908 1.02805 0.98081 0.94082 1.70395 1.24204 1.13486 1.37152 0.84638 0.74215 0.76952 0.80309 1.17669 1.20342 1.17682 1.22012 0.84035 0.98923 1.17875 1.23202 0.89511 0.97710 0.91447 1.67636 1.09246 1.30186 1.14384 0.88715 0.90278 0.88012 0.80657 0.83856 0.74354 0.81527 0.91352 0.79207 0.80467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.16 71.23 0.72 -0.28 16 2 C 0.14 2.46 6.78 42.57 0.29 2.74 16 3 C -0.17 -2.88 9.72 22.33 0.22 -2.66 16 4 C -0.03 -0.63 9.72 22.73 0.22 -0.41 16 5 C -0.20 -5.42 5.89 -20.00 -0.12 -5.54 16 6 C 0.55 19.87 7.75 86.78 0.67 20.54 16 7 O -0.57 -25.78 13.57 -3.97 -0.05 -25.83 16 8 N -0.61 -21.49 5.42 -306.55 -1.66 -23.15 16 9 C -0.05 -2.23 6.90 37.75 0.26 -1.97 16 10 C -0.06 -3.23 10.85 85.42 0.93 -2.30 16 11 N -0.31 -18.92 10.40 -56.46 -0.59 -19.50 16 12 N -0.17 -9.30 3.74 -190.00 -0.71 -10.01 16 13 C -0.35 -18.77 10.25 84.02 0.86 -17.91 16 14 H 0.14 6.46 7.83 -2.91 -0.02 6.43 16 15 C -0.01 -0.37 5.50 84.95 0.47 0.10 16 16 N -0.82 -47.91 11.81 21.66 0.26 -47.65 16 17 Si 1.02 38.57 29.55 68.60 2.03 40.59 16 18 H -0.25 -8.90 7.11 99.48 0.71 -8.20 16 19 H -0.28 -10.46 7.11 99.48 0.71 -9.76 16 20 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 21 C -0.08 -3.62 11.49 83.38 0.96 -2.66 16 22 C 0.14 3.18 10.71 85.03 0.91 4.09 16 23 N -0.50 -11.07 10.25 -182.82 -1.87 -12.94 16 24 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.10 0.50 8.07 -2.39 -0.02 0.48 16 27 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 28 H 0.14 3.48 7.74 -2.91 -0.02 3.46 16 29 H 0.42 10.77 6.89 -92.71 -0.64 10.13 16 30 H 0.17 9.34 5.91 -2.91 -0.02 9.32 16 31 H 0.28 14.81 8.31 -92.70 -0.77 14.04 16 32 H 0.19 6.83 8.06 -2.91 -0.02 6.81 16 33 H 0.18 3.10 6.42 -2.91 -0.02 3.08 16 Total: -1.00 -78.36 295.35 4.31 -74.05 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.53 Total: 30.70 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 6.39 Total: -6.26 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -4.58 Total: -113.26 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.59 kcal Total: -78.36 4.31 -74.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139495205.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.470 kcal (2) G-P(sol) polarization free energy of solvation -78.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds