Wall clock time and date at job start Mon Mar 30 2020 01:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30671 * 125.85210 * 2 1 4 4 C 1.33981 * 109.78002 * 179.97438 * 3 2 1 5 5 C 1.48406 * 125.65363 * 179.97438 * 4 3 2 6 6 C 1.39449 * 120.07928 * 0.02562 * 5 4 3 7 7 C 1.38089 * 120.04574 * 179.97438 * 6 5 4 8 8 C 1.38168 * 120.20960 * 359.97438 * 7 6 5 9 9 C 1.39099 * 120.15421 * 359.97438 * 8 7 6 10 10 N 1.39541 * 120.02298 * 180.02562 * 9 8 7 11 11 C 1.34775 * 120.00187 * 213.34172 * 10 9 8 12 12 O 1.21740 * 119.99916 * 5.27809 * 11 10 9 13 13 C 1.46158 * 119.99736 * 185.27589 * 11 10 9 14 14 H 1.07992 * 120.00219 * 0.02562 * 13 11 10 15 15 C 1.40124 * 119.99551 * 179.97438 * 13 11 10 16 16 N 1.30634 * 120.00265 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99707 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47382 * 90.00349 * 17 15 13 19 19 H 1.48497 * 109.46940 * 210.00541 * 17 15 13 20 20 H 1.48503 * 109.46952 * 330.00149 * 17 15 13 21 21 C 1.38844 * 119.95341 * 359.79348 * 9 8 7 22 22 N 1.31503 * 108.69529 * 0.02562 * 4 3 2 23 23 N 1.34521 * 125.84875 * 179.97438 * 2 1 3 24 24 H 0.96997 * 126.74851 * 0.02562 * 23 2 1 25 25 H 1.08996 * 109.47474 * 90.01606 * 1 2 3 26 26 H 1.09002 * 109.47420 * 210.02643 * 1 2 3 27 27 H 1.09003 * 109.46924 * 330.01878 * 1 2 3 28 28 H 1.08001 * 119.97483 * 359.95148 * 6 5 4 29 29 H 1.07998 * 119.89795 * 179.97438 * 7 6 5 30 30 H 1.07996 * 119.92243 * 180.02562 * 8 7 6 31 31 H 0.97005 * 119.99333 * 33.34584 * 10 9 8 32 32 H 0.97003 * 120.00212 * 179.97438 * 16 15 13 33 33 H 1.07993 * 120.10163 * 180.24728 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2723 1.0591 0.0000 4 6 3.5598 0.6882 0.0006 5 6 4.7248 1.6075 0.0002 6 6 4.5261 2.9877 -0.0003 7 6 5.6106 3.8424 -0.0001 8 6 6.8957 3.3349 0.0011 9 6 7.1038 1.9596 0.0027 10 7 8.4029 1.4500 0.0044 11 6 8.6748 0.2956 -0.6357 12 8 7.8109 -0.2528 -1.2953 13 6 10.0069 -0.2979 -0.5380 14 1 10.7731 0.1884 0.0474 15 6 10.2894 -1.4984 -1.2031 16 7 9.3624 -2.0869 -1.9108 17 14 11.9917 -2.2574 -1.0777 18 1 12.0381 -3.1797 0.0852 19 1 12.2895 -3.0129 -2.3209 20 1 13.0007 -1.1828 -0.8978 21 6 6.0181 1.0942 0.0074 22 7 3.6200 -0.6254 0.0004 23 7 2.2948 -1.0904 0.0005 24 1 2.0047 -2.0159 0.0006 25 1 -0.3634 -0.0003 -1.0276 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5136 28 1 3.5232 3.3884 -0.0011 29 1 5.4539 4.9110 -0.0008 30 1 7.7406 4.0076 0.0017 31 1 9.1102 1.9268 0.4665 32 1 9.5581 -2.9178 -2.3716 33 1 6.1769 0.0260 0.0126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153623871.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:17 Heat of formation + Delta-G solvation = 69.519541 kcal Electronic energy + Delta-G solvation = -19549.115958 eV Core-core repulsion = 16383.313486 eV Total energy + Delta-G solvation = -3165.802472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.90435 -39.08433 -36.89773 -33.77714 -32.93350 -32.38154 -32.22010 -30.27923 -28.89919 -27.81746 -26.17055 -23.59716 -22.21164 -20.98958 -20.34698 -19.48156 -17.70764 -17.41328 -16.26465 -15.62113 -15.51399 -15.30560 -14.54668 -14.23515 -13.82338 -13.67032 -13.20863 -13.07275 -12.93782 -12.58036 -12.43419 -11.91707 -11.70849 -11.35940 -11.09015 -11.04125 -10.84865 -10.57948 -10.32196 -10.23678 -9.87139 -9.59893 -9.20107 -8.84371 -8.12521 -7.68634 -7.04167 -6.30827 -4.78349 1.32422 1.99901 2.10074 2.74244 3.08977 3.15948 3.19410 3.25437 3.95387 4.02944 4.34944 4.60891 4.65629 4.66990 4.84428 5.18171 5.28896 5.52146 5.54531 5.69164 5.70926 5.86638 6.18539 6.19867 6.40929 6.43513 6.62798 6.96227 7.02400 7.13192 7.21016 7.31064 7.40945 7.77552 8.08949 8.20183 8.24805 8.88445 9.26065 10.43043 10.60925 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.004690 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.925798 B = 5969.275970 C = 7146.932576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.272 3.728 3 N -0.532 5.532 4 C 0.279 3.721 5 C -0.007 4.007 6 C -0.121 4.121 7 C -0.107 4.107 8 C -0.160 4.160 9 C 0.187 3.813 10 N -0.700 5.700 11 C 0.541 3.459 12 O -0.556 6.556 13 C -0.539 4.539 14 H 0.072 0.928 15 C 0.086 3.914 16 N -0.758 5.758 17 Si 0.912 3.088 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.091 4.091 22 N -0.289 5.289 23 N -0.487 5.487 24 H 0.439 0.561 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.394 0.606 32 H 0.271 0.729 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.942 5.100 4.899 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.006 4.006 3 N -0.261 5.261 4 C 0.000 4.000 5 C -0.011 4.011 6 C -0.143 4.143 7 C -0.126 4.126 8 C -0.183 4.183 9 C 0.088 3.912 10 N -0.343 5.343 11 C 0.348 3.652 12 O -0.437 6.437 13 C -0.575 4.575 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.386 5.386 17 Si 0.736 3.264 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.114 4.114 22 N -0.117 5.117 23 N -0.205 5.205 24 H 0.284 0.716 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.227 0.773 32 H 0.082 0.918 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.981 4.390 4.281 14.357 hybrid contribution 0.854 -0.865 0.175 1.228 sum -12.128 3.525 4.456 13.393 Atomic orbital electron populations 1.20345 0.83838 1.04737 1.04373 1.24336 0.96508 0.83059 0.96744 1.70418 1.01126 1.29224 1.25355 1.22408 0.91222 0.89017 0.97346 1.17279 0.88298 0.90889 1.04601 1.20883 0.99090 0.91491 1.02834 1.20678 0.91789 0.98959 1.01142 1.21031 0.97433 0.93647 1.06150 1.17794 0.86569 0.91387 0.95483 1.44155 1.06364 1.27347 1.56476 1.18407 0.89974 0.78114 0.78733 1.90667 1.48824 1.61273 1.42926 1.20844 0.95998 1.07802 1.32822 0.90989 1.25742 0.98169 0.96305 0.93257 1.69996 1.32889 1.14289 1.21469 0.86294 0.82272 0.79501 0.78291 1.19608 1.20341 1.18763 1.21378 0.89513 1.01852 0.98672 1.78521 0.95292 1.12044 1.25848 1.48047 1.04511 1.09905 1.58071 0.71635 0.89173 0.90059 0.88501 0.85697 0.86120 0.86231 0.77276 0.91790 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.51 36.01 0.38 -0.13 16 2 C 0.27 3.56 8.22 -155.75 -1.28 2.28 16 3 N -0.53 -9.04 10.82 -8.56 -0.09 -9.13 16 4 C 0.28 5.57 7.77 -156.62 -1.22 4.35 16 5 C -0.01 -0.15 5.87 -104.92 -0.62 -0.76 16 6 C -0.12 -2.11 9.69 -39.19 -0.38 -2.49 16 7 C -0.11 -1.69 10.03 -39.66 -0.40 -2.09 16 8 C -0.16 -2.81 9.96 -39.29 -0.39 -3.20 16 9 C 0.19 4.04 6.27 -83.81 -0.53 3.51 16 10 N -0.70 -16.05 5.32 -11.23 -0.06 -16.11 16 11 C 0.54 15.31 7.47 -13.08 -0.10 15.21 16 12 O -0.56 -17.80 12.71 5.15 0.07 -17.73 16 13 C -0.54 -14.90 9.54 -35.70 -0.34 -15.24 16 14 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 15 C 0.09 2.37 5.50 -17.35 -0.10 2.27 16 16 N -0.76 -22.44 11.82 55.55 0.66 -21.79 16 17 Si 0.91 19.77 29.56 -169.99 -5.02 14.74 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 21 C -0.09 -2.11 8.28 -39.02 -0.32 -2.43 16 22 N -0.29 -5.78 12.42 32.10 0.40 -5.38 16 23 N -0.49 -6.86 7.44 32.61 0.24 -6.61 16 24 H 0.44 4.31 8.96 -182.35 -1.63 2.68 16 25 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.13 1.95 7.83 -52.49 -0.41 1.54 16 29 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.39 7.61 8.79 -40.82 -0.36 7.25 16 32 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 33 H 0.15 3.96 6.20 -52.49 -0.33 3.63 16 LS Contribution 298.98 15.07 4.51 4.51 Total: -1.00 -37.16 298.98 -8.98 -46.15 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -4.39 Total: 10.06 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -5.29 Total: 1.29 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 1.15 Total: -59.01 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.07 Total: -17.73 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -37.16 -8.98 -46.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153623871.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.667 kcal (2) G-P(sol) polarization free energy of solvation -37.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds