Wall clock time and date at job start Mon Mar 30 2020 01:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30860 * 125.38253 * 2 1 4 4 N 1.40443 * 107.00181 * 180.02562 * 3 2 1 5 5 H 0.96997 * 126.88216 * 179.97438 * 4 3 2 6 6 C 1.35370 * 106.23427 * 359.97438 * 4 3 2 7 7 C 1.47761 * 126.11950 * 180.02562 * 6 4 3 8 8 C 1.39741 * 120.05705 * 179.97438 * 7 6 4 9 9 C 1.37648 * 119.94734 * 179.97438 * 8 7 6 10 10 C 1.39291 * 120.05477 * 359.97438 * 9 8 7 11 11 N 1.39103 * 119.94682 * 179.97438 * 10 9 8 12 12 C 1.34778 * 120.00166 * 215.18708 * 11 10 9 13 13 O 1.21788 * 119.99777 * 355.73187 * 12 11 10 14 14 C 1.41666 * 119.99984 * 175.72396 * 12 11 10 15 15 H 1.07995 * 120.00025 * 0.02562 * 14 12 11 16 16 C 1.40142 * 119.99697 * 180.02562 * 14 12 11 17 17 N 1.30626 * 120.00246 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99689 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47169 * 60.00235 * 18 16 14 20 20 H 1.48500 * 109.47263 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47079 * 300.00266 * 18 16 14 22 22 C 1.39294 * 120.10761 * 0.25762 * 10 9 8 23 23 C 1.37657 * 120.05274 * 359.48303 * 22 10 9 24 24 N 1.31882 * 107.76795 * 0.26173 * 6 4 3 25 25 H 1.08998 * 109.47213 * 90.03000 * 1 2 3 26 26 H 1.09004 * 109.47000 * 210.02482 * 1 2 3 27 27 H 1.08999 * 109.46758 * 330.01994 * 1 2 3 28 28 H 1.08003 * 120.02277 * 359.95594 * 8 7 6 29 29 H 1.08001 * 119.97288 * 179.97438 * 9 8 7 30 30 H 0.96997 * 119.99737 * 35.46932 * 11 10 9 31 31 H 0.96998 * 120.00435 * 179.97438 * 17 16 14 32 32 H 1.08003 * 119.97316 * 179.74255 * 22 10 9 33 33 H 1.07999 * 120.03021 * 180.25223 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2647 1.0669 0.0000 4 7 3.5975 0.6240 -0.0006 5 1 4.3946 1.1768 -0.0011 6 6 3.5468 -0.7287 -0.0004 7 6 4.7069 -1.6438 -0.0003 8 6 4.5074 -3.0269 0.0006 9 6 5.5897 -3.8773 0.0001 10 6 6.8831 -3.3603 -0.0017 11 7 7.9753 -4.2217 -0.0016 12 6 9.0958 -3.8893 0.6696 13 8 9.1813 -2.8017 1.2110 14 6 10.1741 -4.8050 0.7455 15 1 10.0984 -5.7693 0.2652 16 6 11.3389 -4.4594 1.4439 17 7 11.4302 -3.2933 2.0252 18 14 12.7610 -5.6666 1.5433 19 1 13.2429 -5.9778 0.1736 20 1 13.8660 -5.0659 2.3328 21 1 12.3043 -6.9161 2.2031 22 6 7.0847 -1.9820 0.0024 23 6 6.0055 -1.1275 -0.0026 24 7 2.2767 -1.0838 -0.0054 25 1 -0.3633 -0.0005 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 3.5047 -3.4282 0.0018 29 1 5.4360 -4.9463 0.0011 30 1 7.9320 -5.0598 -0.4880 31 1 12.2363 -3.0542 2.5089 32 1 8.0885 -1.5835 0.0052 33 1 6.1622 -0.0589 -0.0035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153702007.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:48 Heat of formation + Delta-G solvation = 67.556069 kcal Electronic energy + Delta-G solvation = -19221.565552 eV Core-core repulsion = 16055.677937 eV Total energy + Delta-G solvation = -3165.887615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.94505 -39.32407 -37.20594 -34.05407 -33.15773 -32.57507 -31.74106 -30.53337 -29.32963 -27.94508 -26.55188 -23.37654 -22.52099 -21.07728 -20.29805 -19.77552 -18.11236 -17.67453 -16.43295 -15.87084 -15.61410 -15.56460 -14.56408 -14.12942 -13.78351 -13.57567 -13.27004 -13.11957 -12.87480 -12.77222 -12.51768 -12.10766 -12.08971 -11.71762 -11.37395 -11.17711 -10.81613 -10.72277 -10.46200 -10.10156 -9.97287 -9.92021 -9.18835 -8.87415 -8.62525 -7.84054 -7.18663 -6.48932 -5.03130 1.00555 1.84195 2.14740 2.65185 2.99513 3.06155 3.07159 3.08338 3.88672 4.02610 4.13498 4.38382 4.50139 4.64311 4.91267 5.15478 5.36194 5.43281 5.51996 5.60647 5.65695 5.74135 5.97396 6.05769 6.28449 6.41752 6.50015 6.63791 6.81522 6.93622 7.10875 7.12289 7.20188 7.70734 7.89087 8.01880 8.15756 8.68496 9.11465 10.24998 10.44044 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.057712 B = 0.003291 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.053511 B = 8506.659216 C = 8866.527018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.223 3.777 3 N -0.329 5.329 4 N -0.486 5.486 5 H 0.440 0.560 6 C 0.358 3.642 7 C -0.105 4.105 8 C -0.036 4.036 9 C -0.184 4.184 10 C 0.223 3.777 11 N -0.697 5.697 12 C 0.540 3.460 13 O -0.565 6.565 14 C -0.536 4.536 15 H 0.071 0.929 16 C 0.087 3.913 17 N -0.745 5.745 18 Si 0.915 3.085 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.134 4.134 23 C -0.072 4.072 24 N -0.544 5.544 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.395 0.605 31 H 0.275 0.725 32 H 0.152 0.848 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 1.852 -4.640 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 N -0.159 5.159 4 N -0.203 5.203 5 H 0.286 0.714 6 C 0.084 3.916 7 C -0.110 4.110 8 C -0.057 4.057 9 C -0.206 4.206 10 C 0.121 3.879 11 N -0.339 5.339 12 C 0.350 3.650 13 O -0.449 6.449 14 C -0.571 4.571 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.372 5.372 18 Si 0.738 3.262 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.155 4.155 23 C -0.093 4.093 24 N -0.274 5.274 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.229 0.771 31 H 0.086 0.914 32 H 0.169 0.831 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.461 3.127 -4.098 13.485 hybrid contribution 1.428 -0.703 -0.102 1.595 sum -11.032 2.424 -4.200 12.051 Atomic orbital electron populations 1.20065 0.84106 1.03883 1.03551 1.24241 0.98270 0.85852 0.97585 1.77940 0.86683 1.22474 1.28828 1.48005 1.07700 1.06234 1.58324 0.71402 1.22396 0.93021 0.82638 0.93502 1.17395 0.88101 0.91679 1.13836 1.20814 0.98899 0.90972 0.95029 1.20911 0.91027 0.99878 1.08770 1.18240 0.87677 0.90800 0.91202 1.44258 1.14236 1.21846 1.53573 1.17076 0.80728 0.88449 0.78722 1.90647 1.80249 1.24265 1.49713 1.20005 0.99351 1.02661 1.35058 0.91046 1.25772 0.99291 0.95319 0.93232 1.69981 1.26511 1.18923 1.21803 0.86305 0.79873 0.80752 0.79225 1.18971 1.20285 1.18977 1.21411 1.00237 0.91930 1.01897 1.20884 0.90958 0.99056 0.98402 1.70593 0.99385 1.30390 1.26992 0.89995 0.89605 0.90200 0.85011 0.85592 0.77084 0.91425 0.83088 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 36.00 0.38 -0.15 16 2 C 0.22 3.18 8.12 -157.00 -1.27 1.90 16 3 N -0.33 -4.90 12.79 32.39 0.41 -4.48 16 4 N -0.49 -6.81 7.35 32.24 0.24 -6.58 16 5 H 0.44 4.88 8.11 -182.34 -1.48 3.40 16 6 C 0.36 5.57 7.82 -155.34 -1.21 4.36 16 7 C -0.11 -1.67 5.88 -104.88 -0.62 -2.29 16 8 C -0.04 -0.56 9.68 -39.24 -0.38 -0.94 16 9 C -0.18 -2.96 9.95 -39.41 -0.39 -3.36 16 10 C 0.22 4.31 6.30 -83.78 -0.53 3.78 16 11 N -0.70 -14.52 5.29 -12.43 -0.07 -14.59 16 12 C 0.54 14.10 7.40 -14.95 -0.11 13.99 16 13 O -0.57 -16.61 12.28 5.11 0.06 -16.54 16 14 C -0.54 -13.84 9.31 -37.56 -0.35 -14.19 16 15 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 16 C 0.09 2.24 5.50 -17.35 -0.10 2.15 16 17 N -0.75 -20.60 11.73 55.56 0.65 -19.95 16 18 Si 0.91 18.54 29.56 -169.99 -5.02 13.51 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 22 C -0.13 -2.61 8.66 -39.40 -0.34 -2.95 16 23 C -0.07 -1.16 9.69 -39.23 -0.38 -1.54 16 24 N -0.54 -8.62 10.84 -8.68 -0.09 -8.72 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.13 1.85 7.85 -52.48 -0.41 1.44 16 29 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.40 6.93 8.78 -40.82 -0.36 6.57 16 31 H 0.27 6.88 8.29 -40.82 -0.34 6.54 16 32 H 0.15 3.38 6.20 -52.48 -0.33 3.05 16 33 H 0.11 1.50 7.20 -52.49 -0.38 1.13 16 LS Contribution 296.72 15.07 4.47 4.47 Total: -1.00 -32.67 296.72 -8.84 -41.51 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.19 Total: 10.60 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -5.30 Total: 0.76 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 1.14 Total: -54.31 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.06 Total: -16.54 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.67 -8.84 -41.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153702007.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.069 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds