Wall clock time and date at job start Mon Mar 30 2020 01:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30860 * 125.38253 * 2 1 4 4 N 1.40443 * 107.00181 * 180.02562 * 3 2 1 5 5 H 0.96997 * 126.88216 * 179.97438 * 4 3 2 6 6 C 1.35370 * 106.23427 * 359.97438 * 4 3 2 7 7 C 1.47761 * 126.11950 * 180.02562 * 6 4 3 8 8 C 1.39741 * 120.05705 * 179.97438 * 7 6 4 9 9 C 1.37648 * 119.94734 * 179.97438 * 8 7 6 10 10 C 1.39291 * 120.05477 * 359.97438 * 9 8 7 11 11 N 1.39103 * 119.94682 * 179.97438 * 10 9 8 12 12 C 1.34778 * 120.00166 * 215.18708 * 11 10 9 13 13 O 1.21788 * 119.99777 * 355.73187 * 12 11 10 14 14 C 1.41666 * 119.99984 * 175.72396 * 12 11 10 15 15 H 1.07995 * 120.00025 * 0.02562 * 14 12 11 16 16 C 1.40142 * 119.99697 * 180.02562 * 14 12 11 17 17 N 1.30626 * 120.00246 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99689 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47169 * 60.00235 * 18 16 14 20 20 H 1.48500 * 109.47263 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47079 * 300.00266 * 18 16 14 22 22 C 1.39294 * 120.10761 * 0.25762 * 10 9 8 23 23 C 1.37657 * 120.05274 * 359.48303 * 22 10 9 24 24 N 1.31882 * 107.76795 * 0.26173 * 6 4 3 25 25 H 1.08998 * 109.47213 * 90.03000 * 1 2 3 26 26 H 1.09004 * 109.47000 * 210.02482 * 1 2 3 27 27 H 1.08999 * 109.46758 * 330.01994 * 1 2 3 28 28 H 1.08003 * 120.02277 * 359.95594 * 8 7 6 29 29 H 1.08001 * 119.97288 * 179.97438 * 9 8 7 30 30 H 0.96997 * 119.99737 * 35.46932 * 11 10 9 31 31 H 0.96998 * 120.00435 * 179.97438 * 17 16 14 32 32 H 1.08003 * 119.97316 * 179.74255 * 22 10 9 33 33 H 1.07999 * 120.03021 * 180.25223 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2647 1.0669 0.0000 4 7 3.5975 0.6240 -0.0006 5 1 4.3946 1.1768 -0.0011 6 6 3.5468 -0.7287 -0.0004 7 6 4.7069 -1.6438 -0.0003 8 6 4.5074 -3.0269 0.0006 9 6 5.5897 -3.8773 0.0001 10 6 6.8831 -3.3603 -0.0017 11 7 7.9753 -4.2217 -0.0016 12 6 9.0958 -3.8893 0.6696 13 8 9.1813 -2.8017 1.2110 14 6 10.1741 -4.8050 0.7455 15 1 10.0984 -5.7693 0.2652 16 6 11.3389 -4.4594 1.4439 17 7 11.4302 -3.2933 2.0252 18 14 12.7610 -5.6666 1.5433 19 1 13.2429 -5.9778 0.1736 20 1 13.8660 -5.0659 2.3328 21 1 12.3043 -6.9161 2.2031 22 6 7.0847 -1.9820 0.0024 23 6 6.0055 -1.1275 -0.0026 24 7 2.2767 -1.0838 -0.0054 25 1 -0.3633 -0.0005 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 3.5047 -3.4282 0.0018 29 1 5.4360 -4.9463 0.0011 30 1 7.9320 -5.0598 -0.4880 31 1 12.2363 -3.0542 2.5089 32 1 8.0885 -1.5835 0.0052 33 1 6.1622 -0.0589 -0.0035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153702007.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:48 Heat of formation + Delta-G solvation = 45.619773 kcal Electronic energy + Delta-G solvation = -19222.516781 eV Core-core repulsion = 16055.677937 eV Total energy + Delta-G solvation = -3166.838844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.08933 -40.87856 -38.88404 -35.65777 -34.62066 -34.21161 -33.01028 -31.88205 -30.65749 -29.13520 -28.25182 -24.79213 -23.88452 -22.51917 -21.64306 -21.14465 -19.45692 -19.29294 -17.95970 -17.63450 -17.00381 -16.72908 -16.10791 -15.72778 -15.17997 -14.79636 -14.70960 -14.45931 -14.17496 -14.00132 -13.65743 -13.47810 -13.24762 -13.12464 -12.92222 -12.75872 -12.67981 -12.15114 -12.07068 -11.45521 -11.13677 -11.07750 -10.94684 -10.39254 -10.04163 -9.75740 -8.72935 -8.39816 -7.03334 -0.28786 0.49613 0.91957 1.40961 1.42198 1.55440 1.57103 1.87116 2.20522 2.36945 2.84616 2.92711 2.98370 3.58641 3.61664 3.80289 3.93862 4.09450 4.41036 4.56929 4.70544 4.77843 4.83566 4.91930 5.07125 5.14495 5.21225 5.27443 5.45124 5.50308 5.55451 5.76182 5.87456 6.04327 6.14682 6.35538 6.72844 7.01661 7.35606 8.35544 8.54171 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.057712 B = 0.003291 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.053511 B = 8506.659216 C = 8866.527018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.215 3.785 3 N -0.342 5.342 4 N -0.479 5.479 5 H 0.450 0.550 6 C 0.346 3.654 7 C -0.095 4.095 8 C -0.033 4.033 9 C -0.167 4.167 10 C 0.191 3.809 11 N -0.692 5.692 12 C 0.528 3.472 13 O -0.610 6.610 14 C -0.563 4.563 15 H 0.093 0.907 16 C 0.033 3.967 17 N -0.799 5.799 18 Si 0.999 3.001 19 H -0.253 1.253 20 H -0.275 1.275 21 H -0.254 1.254 22 C -0.157 4.157 23 C -0.065 4.065 24 N -0.556 5.556 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.410 0.590 31 H 0.279 0.721 32 H 0.114 0.886 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.862 0.703 -5.114 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.067 4.067 3 N -0.173 5.173 4 N -0.197 5.197 5 H 0.298 0.702 6 C 0.072 3.928 7 C -0.100 4.100 8 C -0.054 4.054 9 C -0.188 4.188 10 C 0.091 3.909 11 N -0.335 5.335 12 C 0.338 3.662 13 O -0.497 6.497 14 C -0.598 4.598 15 H 0.111 0.889 16 C -0.186 4.186 17 N -0.427 5.427 18 Si 0.818 3.182 19 H -0.177 1.177 20 H -0.199 1.199 21 H -0.178 1.178 22 C -0.178 4.178 23 C -0.086 4.086 24 N -0.286 5.286 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.171 0.829 29 H 0.172 0.828 30 H 0.246 0.754 31 H 0.090 0.910 32 H 0.132 0.868 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.119 1.973 -4.609 14.982 hybrid contribution 1.708 -0.230 0.000 1.723 sum -12.411 1.743 -4.609 13.353 Atomic orbital electron populations 1.20290 0.80983 1.05172 1.05051 1.25126 1.00094 0.85035 0.96419 1.77935 0.86901 1.23150 1.29321 1.48018 1.08161 1.05973 1.57580 0.70155 1.22282 0.92996 0.83106 0.94464 1.17506 0.87988 0.92233 1.12229 1.21080 0.99601 0.90701 0.93980 1.21109 0.89446 1.01452 1.06786 1.18477 0.88420 0.90565 0.93453 1.43743 1.13623 1.22673 1.53466 1.17386 0.82142 0.87961 0.78704 1.90612 1.81598 1.25877 1.51630 1.20554 0.99971 1.03592 1.35657 0.88906 1.26996 1.02370 0.97160 0.92052 1.70137 1.27792 1.21571 1.23197 0.85031 0.75498 0.77872 0.79765 1.17662 1.19925 1.17752 1.21194 0.99478 0.92951 1.04174 1.20998 0.90325 0.99987 0.97311 1.70589 0.99532 1.31347 1.27177 0.88268 0.88503 0.88723 0.82895 0.82768 0.75390 0.91046 0.86844 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.51 71.23 0.75 -0.13 16 2 C 0.22 5.63 8.12 138.68 1.13 6.76 16 3 N -0.34 -9.54 12.79 -51.43 -0.66 -10.20 16 4 N -0.48 -12.67 7.35 -51.93 -0.38 -13.06 16 5 H 0.45 9.39 8.11 -213.10 -1.73 7.66 16 6 C 0.35 10.15 7.82 136.72 1.07 11.22 16 7 C -0.10 -2.88 5.88 -20.03 -0.12 -3.00 16 8 C -0.03 -0.94 9.68 22.49 0.22 -0.73 16 9 C -0.17 -5.11 9.95 22.38 0.22 -4.89 16 10 C 0.19 7.47 6.30 38.50 0.24 7.71 16 11 N -0.69 -29.41 5.29 -311.43 -1.65 -31.05 16 12 C 0.53 28.61 7.40 85.09 0.63 29.24 16 13 O -0.61 -37.86 12.28 -4.63 -0.06 -37.92 16 14 C -0.56 -29.57 9.31 23.58 0.22 -29.35 16 15 H 0.09 4.28 7.85 -2.91 -0.02 4.25 16 16 C 0.03 1.71 5.50 85.33 0.47 2.18 16 17 N -0.80 -45.83 11.73 21.85 0.26 -45.58 16 18 Si 1.00 37.93 29.56 68.60 2.03 39.96 16 19 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 21 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 22 C -0.16 -6.37 8.66 22.39 0.19 -6.17 16 23 C -0.07 -2.11 9.69 22.50 0.22 -1.90 16 24 N -0.56 -16.38 10.84 -181.36 -1.97 -18.34 16 25 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.15 3.81 7.85 -2.91 -0.02 3.78 16 29 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 30 H 0.41 14.36 8.78 -92.71 -0.81 13.54 16 31 H 0.28 14.50 8.29 -92.71 -0.77 13.74 16 32 H 0.11 5.49 6.20 -2.91 -0.02 5.48 16 33 H 0.14 3.61 7.20 -2.91 -0.02 3.59 16 Total: -1.00 -73.26 296.72 1.46 -71.80 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -1.36 Total: 33.45 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 5.24 Total: 10.94 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -4.40 Total: -118.23 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.06 Total: -37.92 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -73.26 1.46 -71.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153702007.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.419 kcal (2) G-P(sol) polarization free energy of solvation -73.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds