Wall clock time and date at job start Mon Mar 30 2020 00:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47170 * 221.70589 * 3 2 1 5 5 N 1.46497 * 109.47360 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00488 * 274.96449 * 5 4 3 7 7 C 1.50701 * 109.47110 * 262.72011 * 6 5 4 8 8 H 1.08004 * 119.99895 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00320 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99701 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00269 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47077 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47324 * 119.99590 * 11 9 7 14 14 H 1.48506 * 109.47103 * 239.99919 * 11 9 7 15 15 C 1.34775 * 119.99645 * 94.96036 * 5 4 3 16 16 O 1.21649 * 120.00413 * 0.57881 * 15 5 4 17 17 C 1.47068 * 120.00073 * 180.57721 * 15 5 4 18 18 C 1.38001 * 125.92030 * 170.06085 * 17 15 5 19 19 C 1.39356 * 107.48485 * 180.02562 * 18 17 15 20 20 C 1.38076 * 107.51546 * 359.97438 * 19 18 17 21 21 C 1.43204 * 125.89598 * 180.02562 * 20 19 18 22 22 N 9.96004 * 168.49565 * 254.23669 * 2 1 3 23 23 N 1.36727 * 108.21057 * 0.26695 * 20 19 18 24 24 H 0.96994 * 125.68583 * 179.73357 * 23 20 19 25 25 H 1.09004 * 109.47281 * 101.70727 * 3 2 1 26 26 H 1.09002 * 109.47660 * 341.70859 * 3 2 1 27 27 H 1.09003 * 109.47034 * 60.00448 * 4 3 2 28 28 H 1.08996 * 109.47288 * 300.00308 * 4 3 2 29 29 H 1.09001 * 109.46986 * 22.71478 * 6 5 4 30 30 H 1.08991 * 109.47402 * 142.71830 * 6 5 4 31 31 H 0.97009 * 119.99934 * 180.02562 * 10 9 7 32 32 H 1.08001 * 126.25633 * 0.02562 * 18 17 15 33 33 H 1.07995 * 126.24276 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0778 0.9597 5 7 4.5825 1.0781 0.9602 6 6 5.3150 0.1555 1.8311 7 6 5.7216 0.8719 3.0931 8 1 5.4608 1.9107 3.2322 9 6 6.4264 0.2013 4.0700 10 7 6.7435 -1.0637 3.9008 11 14 6.9297 1.0892 5.6346 12 1 6.4549 2.4952 5.5804 13 1 6.3255 0.4071 6.8071 14 1 8.4094 1.0713 5.7597 15 6 5.2564 1.9271 0.1593 16 8 4.6483 2.7005 -0.5562 17 6 6.7270 1.9187 0.1504 18 6 7.5350 2.5867 -0.7470 19 6 8.8577 2.3134 -0.4035 20 6 8.8374 1.4828 0.6993 21 6 9.9850 0.9597 1.3776 22 7 10.8960 0.5396 1.9117 23 7 7.5325 1.2414 1.0285 24 1 7.2277 0.6854 1.7625 25 1 2.9713 0.2094 -1.0063 26 1 2.9719 -0.9749 0.3225 27 1 2.7544 0.8691 1.9660 28 1 2.7538 2.0533 0.6372 29 1 4.6758 -0.6906 2.0836 30 1 6.2050 -0.2030 1.3141 31 1 7.2391 -1.5357 4.5883 32 1 7.2030 3.2078 -1.5658 33 1 9.7379 2.6838 -0.9078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160560547.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:51 Heat of formation + Delta-G solvation = 63.999477 kcal Electronic energy + Delta-G solvation = -20141.701441 eV Core-core repulsion = 16975.659600 eV Total energy + Delta-G solvation = -3166.041840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.42296 -40.21987 -37.92033 -37.48643 -37.04857 -35.01364 -32.98585 -31.72718 -30.52178 -29.27456 -26.01475 -25.27648 -23.56855 -21.69656 -21.18602 -19.46839 -18.95488 -18.37469 -17.99943 -16.99667 -16.46907 -16.24088 -15.99021 -15.57120 -15.40794 -14.88029 -14.56998 -14.47778 -14.41487 -14.12539 -13.79730 -13.71466 -13.58381 -13.40949 -13.25593 -13.13877 -12.99020 -12.74952 -12.54774 -12.29422 -11.84813 -11.76689 -11.06935 -10.78349 -9.92571 -9.68215 -9.15336 -8.41774 -6.57904 0.16294 1.25979 1.29589 1.32587 1.39370 1.44588 1.67700 1.82212 2.11797 2.26789 2.37636 2.47780 2.52318 2.88689 3.16693 3.22509 3.70101 4.13608 4.19197 4.40102 4.49866 4.58124 4.66211 4.88165 4.99704 5.07970 5.08374 5.26326 5.49807 5.61695 5.79062 5.80599 6.01186 6.31157 6.36499 6.54079 6.58699 6.64802 7.13455 7.24187 8.58797 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.007328 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.018980 B = 3819.835605 C = 5273.184329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.245 3.755 3 C -0.032 4.032 4 C 0.121 3.879 5 N -0.592 5.592 6 C 0.224 3.776 7 C -0.561 4.561 8 H 0.063 0.937 9 C 0.039 3.961 10 N -0.898 5.898 11 Si 0.930 3.070 12 H -0.266 1.266 13 H -0.274 1.274 14 H -0.287 1.287 15 C 0.587 3.413 16 O -0.562 6.562 17 C -0.014 4.014 18 C -0.126 4.126 19 C -0.113 4.113 20 C 0.048 3.952 21 C 0.299 3.701 22 N -0.446 5.446 23 N -0.502 5.502 24 H 0.446 0.554 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.273 0.727 32 H 0.175 0.825 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 2.913 -7.651 8.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.072 4.072 3 C -0.073 4.073 4 C -0.003 4.003 5 N -0.322 5.322 6 C 0.103 3.897 7 C -0.599 4.599 8 H 0.081 0.919 9 C -0.165 4.165 10 N -0.534 5.534 11 Si 0.756 3.244 12 H -0.190 1.190 13 H -0.199 1.199 14 H -0.214 1.214 15 C 0.377 3.623 16 O -0.442 6.442 17 C -0.135 4.135 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.072 4.072 21 C -0.016 4.016 22 N -0.124 5.124 23 N -0.111 5.111 24 H 0.304 0.696 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.193 0.807 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.008 2.323 -6.882 7.264 hybrid contribution 0.285 -0.055 1.590 1.616 sum 0.293 2.269 -5.292 5.766 Atomic orbital electron populations 1.81230 1.14414 1.10596 1.10667 1.29212 0.95076 0.91452 0.91436 1.19731 0.80043 1.03386 1.04168 1.21301 0.79040 0.99622 1.00330 1.47970 1.06729 1.37434 1.40044 1.19640 0.92836 0.89400 0.87832 1.21782 1.36635 0.98454 1.03064 0.91898 1.25452 0.95573 0.95212 1.00288 1.69940 1.38269 1.09392 1.35848 0.85884 0.77800 0.79721 0.80958 1.18972 1.19910 1.21361 1.17287 0.85374 0.80068 0.79604 1.90752 1.68869 1.40916 1.43669 1.20714 0.90898 1.04443 0.97477 1.21428 0.90981 1.02147 1.00634 1.21505 0.98810 0.98857 0.94915 1.16087 0.80417 1.09018 1.01691 1.24625 0.92501 0.92231 0.92221 1.81239 1.12042 1.10137 1.09009 1.44362 1.04151 1.36417 1.26210 0.69635 0.85574 0.85125 0.89134 0.89425 0.92573 0.94699 0.91742 0.80748 0.79635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.74 18.54 20.00 0.37 -14.37 16 2 C 0.25 5.95 15.43 89.44 1.38 7.33 16 3 C -0.03 -0.65 6.02 28.79 0.17 -0.47 16 4 C 0.12 3.16 5.39 86.38 0.47 3.62 16 5 N -0.59 -18.92 2.48 -830.45 -2.06 -20.98 16 6 C 0.22 8.30 4.74 85.63 0.41 8.70 16 7 C -0.56 -23.96 7.26 25.60 0.19 -23.77 16 8 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.04 1.77 5.06 84.65 0.43 2.19 16 10 N -0.90 -42.30 13.29 21.45 0.28 -42.01 16 11 Si 0.93 38.11 29.54 68.60 2.03 40.14 16 12 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 13 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 14 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 15 C 0.59 19.83 7.59 86.56 0.66 20.49 16 16 O -0.56 -20.14 16.39 -4.19 -0.07 -20.21 16 17 C -0.01 -0.47 6.61 40.59 0.27 -0.20 16 18 C -0.13 -3.30 10.61 22.48 0.24 -3.06 16 19 C -0.11 -2.72 10.80 22.50 0.24 -2.47 16 20 C 0.05 1.48 6.93 39.59 0.27 1.76 16 21 C 0.30 10.19 15.89 88.33 1.40 11.59 16 22 N -0.45 -16.61 18.54 19.01 0.35 -16.26 16 23 N -0.50 -17.59 4.80 -175.92 -0.85 -18.44 16 24 H 0.45 17.54 3.22 -92.71 -0.30 17.24 16 25 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.09 2.34 8.11 -2.39 -0.02 2.32 16 28 H 0.09 2.36 7.27 -2.39 -0.02 2.34 16 29 H 0.06 2.08 8.02 -2.39 -0.02 2.07 16 30 H 0.04 1.37 5.21 -2.39 -0.01 1.36 16 31 H 0.27 12.62 8.31 -92.70 -0.77 11.85 16 32 H 0.18 3.76 8.06 -2.91 -0.02 3.73 16 33 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -54.31 307.59 7.06 -47.25 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.87 Total: 19.17 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 6.12 Total: 25.71 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -1.90 Total: -112.06 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.07 Total: -20.21 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -54.31 7.06 -47.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160560547.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.249 kcal (2) G-P(sol) polarization free energy of solvation -54.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds