Wall clock time and date at job start Mon Mar 30 2020 00:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99693 * 2 1 4 4 H 1.48509 * 109.47057 * 239.99655 * 3 2 1 5 5 H 1.48507 * 109.47611 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47446 * 119.99598 * 3 2 1 7 7 C 1.37873 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99668 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00395 * 0.02562 * 7 2 1 10 10 O 1.42897 * 113.01056 * 48.36526 * 9 7 2 11 11 C 1.53937 * 113.73227 * 179.97438 * 9 7 2 12 12 N 1.47955 * 86.18157 * 138.07796 * 11 9 7 13 13 C 1.38511 * 111.00430 * 222.41404 * 12 11 9 14 14 C 1.40385 * 119.24750 * 179.97438 * 13 12 11 15 15 C 1.36128 * 119.85303 * 179.97438 * 14 13 12 16 16 C 1.41176 * 118.33135 * 0.02562 * 15 14 13 17 17 N 1.33483 * 121.08274 * 179.97438 * 16 15 14 18 18 C 1.31435 * 119.71919 * 180.02562 * 17 16 15 19 19 C 1.39520 * 120.59373 * 359.97438 * 18 17 16 20 20 N 1.31431 * 120.74639 * 359.97438 * 19 18 17 21 21 C 1.33825 * 119.79150 * 0.04556 * 20 19 18 22 22 N 1.31726 * 119.24324 * 359.73340 * 13 12 11 23 23 C 1.47961 * 90.76430 * 335.31007 * 12 11 9 24 24 H 0.96994 * 120.00600 * 0.02562 * 1 2 3 25 25 H 0.96704 * 113.99705 * 311.63591 * 10 9 7 26 26 H 1.09005 * 113.75745 * 252.39518 * 11 9 7 27 27 H 1.08996 * 113.76539 * 23.76205 * 11 9 7 28 28 H 1.07994 * 120.07585 * 359.97438 * 14 13 12 29 29 H 1.08001 * 120.83264 * 180.02562 * 15 14 13 30 30 H 1.07999 * 119.70524 * 179.97438 * 18 17 16 31 31 H 1.07996 * 119.62905 * 180.02562 * 19 18 17 32 32 H 1.09002 * 113.75838 * 270.37219 * 23 12 11 33 33 H 1.09002 * 113.86277 * 139.01376 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.2154 -2.5462 -0.9829 11 6 2.1618 -3.7402 0.0005 12 7 1.2179 -4.3106 0.9869 13 6 1.8964 -4.9533 2.0092 14 6 1.1649 -5.5586 3.0433 15 6 1.8191 -6.1940 4.0540 16 6 3.2304 -6.2212 4.0258 17 7 3.9273 -6.8284 4.9888 18 6 5.2405 -6.8371 4.9361 19 6 5.9130 -6.2178 3.8822 20 7 5.2476 -5.6148 2.9224 21 6 3.9099 -5.5919 2.9537 22 7 3.2130 -4.9865 1.9864 23 6 0.7984 -2.9532 1.4000 24 1 -0.4851 0.8399 -0.0004 25 1 -0.3590 -1.7683 -0.9866 26 1 2.1783 -4.2728 -0.9504 27 1 3.1577 -3.5543 0.4025 28 1 0.0857 -5.5204 3.0371 29 1 1.2723 -6.6654 4.8572 30 1 5.8042 -7.3280 5.7156 31 1 6.9925 -6.2347 3.8542 32 1 1.3956 -2.5369 2.2113 33 1 -0.2741 -2.8551 1.5679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170086224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:21 Heat of formation + Delta-G solvation = 90.688916 kcal Electronic energy + Delta-G solvation = -20216.699222 eV Core-core repulsion = 17051.814722 eV Total energy + Delta-G solvation = -3164.884499 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.62617 -39.95196 -37.46773 -34.95520 -34.31190 -32.14544 -31.83304 -30.79811 -27.88590 -25.74652 -25.39732 -24.56107 -23.40397 -22.10896 -19.30748 -18.84360 -18.12764 -17.32098 -17.22146 -15.69473 -15.52017 -15.21223 -14.97525 -14.50505 -14.40883 -14.03807 -13.68920 -13.05183 -12.70981 -12.45616 -12.13597 -11.88550 -11.69520 -11.51235 -11.42955 -11.03680 -10.88616 -10.52467 -10.41968 -10.18788 -9.62406 -9.31501 -9.21120 -8.71497 -8.66847 -8.43158 -7.94509 -6.33901 -4.43199 0.12221 0.44896 1.94386 2.70542 3.19855 3.24659 3.28408 3.55161 3.97502 4.04668 4.13976 4.19887 4.30986 4.66354 4.81992 4.89485 5.01603 5.11183 5.28251 5.54849 5.66821 5.86727 5.93321 5.98895 6.05773 6.25337 6.42003 6.68262 6.69674 6.80117 7.06878 7.26476 7.53444 7.69095 7.71010 7.90072 8.13140 8.60072 9.27144 9.54256 10.72312 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025621 B = 0.005042 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.590924 B = 5551.994067 C = 6103.084314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.070 0.930 9 C 0.246 3.754 10 O -0.570 6.570 11 C 0.023 3.977 12 N -0.440 5.440 13 C 0.355 3.645 14 C -0.144 4.144 15 C -0.028 4.028 16 C 0.004 3.996 17 N -0.409 5.409 18 C 0.047 3.953 19 C 0.102 3.898 20 N -0.424 5.424 21 C 0.291 3.709 22 N -0.499 5.499 23 C 0.007 3.993 24 H 0.273 0.727 25 H 0.391 0.609 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.174 0.826 31 H 0.177 0.823 32 H 0.070 0.930 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.272 -10.262 9.618 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.204 3.796 10 O -0.382 6.382 11 C -0.104 4.104 12 N -0.158 5.158 13 C 0.106 3.894 14 C -0.168 4.168 15 C -0.055 4.055 16 C -0.125 4.125 17 N -0.124 5.124 18 C -0.129 4.129 19 C -0.076 4.076 20 N -0.139 5.139 21 C 0.048 3.952 22 N -0.216 5.216 23 C -0.119 4.119 24 H 0.083 0.917 25 H 0.246 0.754 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.171 0.829 29 H 0.169 0.831 30 H 0.191 0.809 31 H 0.194 0.806 32 H 0.088 0.912 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.188 -10.711 8.494 14.621 hybrid contribution 0.372 1.286 1.254 1.834 sum 5.560 -9.425 9.748 14.655 Atomic orbital electron populations 1.69315 1.06105 1.28147 1.50416 1.25063 0.95017 0.99780 0.93173 0.86423 0.79546 0.81754 0.79013 1.19767 1.20961 1.20037 1.21575 0.93939 0.90214 1.51573 0.91230 1.19775 0.85093 0.91600 0.83157 1.86066 1.46109 1.48759 1.57244 1.24296 0.96655 0.94912 0.94573 1.65969 1.25968 1.17240 1.06649 1.21207 0.87245 0.90667 0.90253 1.21718 1.02447 0.98674 0.93931 1.21145 0.90999 0.95467 0.97893 1.20251 0.95999 1.01506 0.94777 1.68459 1.08185 1.12464 1.23271 1.23930 0.91008 0.98774 0.99141 1.24100 1.01953 0.91929 0.89659 1.68321 1.06312 1.14434 1.24844 1.19841 0.90850 0.93874 0.90609 1.67700 1.07455 1.19864 1.26547 1.25004 1.01551 0.82000 1.03373 0.91676 0.75369 0.90133 0.87799 0.82937 0.83131 0.80855 0.80623 0.91194 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.34 11.08 55.43 0.61 -22.73 16 2 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 3 Si 0.91 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.53 -14.13 8.62 -34.44 -0.30 -14.42 16 8 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 9 C 0.25 6.10 1.44 -90.84 -0.13 5.97 16 10 O -0.57 -14.87 13.49 -35.23 -0.48 -15.34 16 11 C 0.02 0.52 7.02 -2.77 -0.02 0.50 16 12 N -0.44 -9.22 6.22 -176.57 -1.10 -10.32 16 13 C 0.36 6.77 5.89 -155.59 -0.92 5.85 16 14 C -0.14 -2.19 9.84 -39.53 -0.39 -2.58 16 15 C -0.03 -0.39 10.10 -39.23 -0.40 -0.79 16 16 C 0.00 0.07 6.60 -84.72 -0.56 -0.49 16 17 N -0.41 -5.59 10.46 -10.75 -0.11 -5.70 16 18 C 0.05 0.48 11.21 -17.24 -0.19 0.29 16 19 C 0.10 1.15 11.21 -17.25 -0.19 0.95 16 20 N -0.42 -7.04 10.55 -12.47 -0.13 -7.17 16 21 C 0.29 5.29 7.60 -157.72 -1.20 4.09 16 22 N -0.50 -10.07 8.20 -11.81 -0.10 -10.17 16 23 C 0.01 0.15 7.25 -2.77 -0.02 0.13 16 24 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.39 10.30 6.42 45.56 0.29 10.59 16 26 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 27 H 0.10 2.41 6.60 -51.93 -0.34 2.07 16 28 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 29 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.07 1.58 7.86 -51.93 -0.41 1.17 16 33 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 288.56 15.07 4.35 4.35 Total: -1.00 -30.46 288.56 -8.92 -39.38 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -2.54 Total: 11.21 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -4.41 Total: 1.26 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.83 Total: -56.08 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.48 Total: -15.34 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.46 -8.92 -39.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170086224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.067 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds