Wall clock time and date at job start Mon Mar 30 2020 00:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99693 * 2 1 4 4 H 1.48509 * 109.47057 * 239.99655 * 3 2 1 5 5 H 1.48507 * 109.47611 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47446 * 119.99598 * 3 2 1 7 7 C 1.37873 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99668 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00395 * 0.02562 * 7 2 1 10 10 O 1.42897 * 113.01056 * 48.36526 * 9 7 2 11 11 C 1.53937 * 113.73227 * 179.97438 * 9 7 2 12 12 N 1.47955 * 86.18157 * 138.07796 * 11 9 7 13 13 C 1.38511 * 111.00430 * 222.41404 * 12 11 9 14 14 C 1.40385 * 119.24750 * 179.97438 * 13 12 11 15 15 C 1.36128 * 119.85303 * 179.97438 * 14 13 12 16 16 C 1.41176 * 118.33135 * 0.02562 * 15 14 13 17 17 N 1.33483 * 121.08274 * 179.97438 * 16 15 14 18 18 C 1.31435 * 119.71919 * 180.02562 * 17 16 15 19 19 C 1.39520 * 120.59373 * 359.97438 * 18 17 16 20 20 N 1.31431 * 120.74639 * 359.97438 * 19 18 17 21 21 C 1.33825 * 119.79150 * 0.04556 * 20 19 18 22 22 N 1.31726 * 119.24324 * 359.73340 * 13 12 11 23 23 C 1.47961 * 90.76430 * 335.31007 * 12 11 9 24 24 H 0.96994 * 120.00600 * 0.02562 * 1 2 3 25 25 H 0.96704 * 113.99705 * 311.63591 * 10 9 7 26 26 H 1.09005 * 113.75745 * 252.39518 * 11 9 7 27 27 H 1.08996 * 113.76539 * 23.76205 * 11 9 7 28 28 H 1.07994 * 120.07585 * 359.97438 * 14 13 12 29 29 H 1.08001 * 120.83264 * 180.02562 * 15 14 13 30 30 H 1.07999 * 119.70524 * 179.97438 * 18 17 16 31 31 H 1.07996 * 119.62905 * 180.02562 * 19 18 17 32 32 H 1.09002 * 113.75838 * 270.37219 * 23 12 11 33 33 H 1.09002 * 113.86277 * 139.01376 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.2154 -2.5462 -0.9829 11 6 2.1618 -3.7402 0.0005 12 7 1.2179 -4.3106 0.9869 13 6 1.8964 -4.9533 2.0092 14 6 1.1649 -5.5586 3.0433 15 6 1.8191 -6.1940 4.0540 16 6 3.2304 -6.2212 4.0258 17 7 3.9273 -6.8284 4.9888 18 6 5.2405 -6.8371 4.9361 19 6 5.9130 -6.2178 3.8822 20 7 5.2476 -5.6148 2.9224 21 6 3.9099 -5.5919 2.9537 22 7 3.2130 -4.9865 1.9864 23 6 0.7984 -2.9532 1.4000 24 1 -0.4851 0.8399 -0.0004 25 1 -0.3590 -1.7683 -0.9866 26 1 2.1783 -4.2728 -0.9504 27 1 3.1577 -3.5543 0.4025 28 1 0.0857 -5.5204 3.0371 29 1 1.2723 -6.6654 4.8572 30 1 5.8042 -7.3280 5.7156 31 1 6.9925 -6.2347 3.8542 32 1 1.3956 -2.5369 2.2113 33 1 -0.2741 -2.8551 1.5679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170086224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:21 Heat of formation + Delta-G solvation = 66.415463 kcal Electronic energy + Delta-G solvation = -20217.751798 eV Core-core repulsion = 17051.814722 eV Total energy + Delta-G solvation = -3165.937075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.81680 -41.44615 -38.86167 -36.19772 -35.99039 -34.15667 -33.01764 -32.09025 -29.48859 -27.36472 -27.07111 -25.82443 -24.71660 -23.42337 -20.74223 -20.44079 -19.58876 -18.85962 -18.45566 -17.25523 -17.16470 -16.75483 -16.21499 -15.99028 -15.73599 -15.42142 -14.86042 -14.75173 -14.21836 -13.98684 -13.58487 -13.38934 -13.16378 -12.95740 -12.82029 -12.77027 -12.65983 -12.29674 -12.20663 -11.65932 -11.39684 -10.80087 -10.63676 -10.47517 -10.28420 -9.79072 -9.49768 -8.30213 -6.47447 -0.96007 -0.66186 0.81845 1.40913 1.42368 1.50705 1.59170 2.33038 2.39055 2.80736 2.91623 2.94959 2.98771 3.08601 3.62591 3.68234 3.86077 4.00295 4.07916 4.18882 4.25226 4.37523 4.45905 4.62850 4.66514 4.83035 4.90983 4.96299 5.06749 5.31765 5.38459 5.69272 5.91290 5.97894 6.09006 6.46036 6.56177 6.92523 7.25288 7.48884 8.75031 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025621 B = 0.005042 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.590924 B = 5551.994067 C = 6103.084314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.035 3.965 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.563 4.563 8 H 0.058 0.942 9 C 0.226 3.774 10 O -0.579 6.579 11 C 0.031 3.969 12 N -0.436 5.436 13 C 0.324 3.676 14 C -0.150 4.150 15 C -0.011 4.011 16 C -0.007 4.007 17 N -0.423 5.423 18 C 0.074 3.926 19 C 0.117 3.883 20 N -0.470 5.470 21 C 0.254 3.746 22 N -0.533 5.533 23 C 0.022 3.978 24 H 0.278 0.722 25 H 0.386 0.614 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.174 0.826 29 H 0.189 0.811 30 H 0.232 0.768 31 H 0.226 0.774 32 H 0.059 0.941 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.690 -11.474 12.247 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.166 4.166 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.601 4.601 8 H 0.076 0.924 9 C 0.184 3.816 10 O -0.390 6.390 11 C -0.097 4.097 12 N -0.155 5.155 13 C 0.077 3.923 14 C -0.173 4.173 15 C -0.038 4.038 16 C -0.134 4.134 17 N -0.138 5.138 18 C -0.102 4.102 19 C -0.061 4.061 20 N -0.187 5.187 21 C 0.013 3.987 22 N -0.249 5.249 23 C -0.104 4.104 24 H 0.088 0.912 25 H 0.241 0.759 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.192 0.808 29 H 0.206 0.794 30 H 0.248 0.752 31 H 0.243 0.757 32 H 0.077 0.923 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.564 -11.936 11.116 17.581 hybrid contribution 0.244 1.492 0.615 1.632 sum 6.808 -10.443 11.730 17.118 Atomic orbital electron populations 1.69369 1.06865 1.29025 1.50058 1.25723 0.95871 1.02414 0.92586 0.85503 0.78469 0.78310 0.78728 1.19769 1.19817 1.20017 1.21745 0.93651 0.91681 1.52984 0.92408 1.20015 0.85323 0.91928 0.84302 1.86046 1.46386 1.48497 1.58121 1.24036 0.96256 0.94392 0.95011 1.65928 1.25873 1.16473 1.07200 1.21235 0.87519 0.92227 0.91324 1.21820 1.03309 0.98866 0.93338 1.21540 0.90558 0.93867 0.97825 1.20416 0.96962 1.01431 0.94599 1.68608 1.09700 1.12933 1.22536 1.24963 0.90187 0.95901 0.99174 1.25084 1.04064 0.88998 0.87995 1.68306 1.06108 1.16683 1.27557 1.20038 0.91717 0.95544 0.91411 1.67474 1.08323 1.20874 1.28222 1.24600 1.01155 0.83365 1.01308 0.91242 0.75877 0.90720 0.88962 0.80837 0.79351 0.75156 0.75744 0.92267 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.05 11.08 21.45 0.24 -47.82 16 2 C 0.03 1.83 5.39 84.65 0.46 2.28 16 3 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.56 -30.87 8.62 25.60 0.22 -30.65 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.18 16 9 C 0.23 11.72 1.44 -10.89 -0.02 11.71 16 10 O -0.58 -31.38 13.49 -148.98 -2.01 -33.39 16 11 C 0.03 1.50 7.02 86.41 0.61 2.10 16 12 N -0.44 -19.07 6.22 -715.74 -4.45 -23.52 16 13 C 0.32 12.77 5.89 133.74 0.79 13.55 16 14 C -0.15 -4.51 9.84 22.30 0.22 -4.29 16 15 C -0.01 -0.29 10.10 22.50 0.23 -0.07 16 16 C -0.01 -0.22 6.60 40.46 0.27 0.05 16 17 N -0.42 -10.05 10.46 -187.93 -1.97 -12.01 16 18 C 0.07 1.17 11.21 85.06 0.95 2.13 16 19 C 0.12 2.20 11.21 85.06 0.95 3.15 16 20 N -0.47 -15.16 10.55 -193.36 -2.04 -17.20 16 21 C 0.25 9.22 7.60 134.98 1.03 10.24 16 22 N -0.53 -22.31 8.20 -191.29 -1.57 -23.88 16 23 C 0.02 1.04 7.25 86.41 0.63 1.66 16 24 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 25 H 0.39 21.11 6.42 -74.05 -0.48 20.63 16 26 H 0.07 3.57 8.14 -2.38 -0.02 3.55 16 27 H 0.09 4.60 6.60 -2.39 -0.02 4.59 16 28 H 0.17 4.28 8.06 -2.91 -0.02 4.25 16 29 H 0.19 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.23 0.93 8.06 -2.91 -0.02 0.90 16 31 H 0.23 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.06 2.81 7.86 -2.39 -0.02 2.79 16 33 H 0.09 3.97 8.14 -2.39 -0.02 3.95 16 Total: -1.00 -70.24 288.56 -2.76 -73.00 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.68 Total: 28.98 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 6.33 Total: 11.87 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -9.79 Total: -124.43 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -2.01 Total: -33.39 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -70.24 -2.76 -73.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170086224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.419 kcal (2) G-P(sol) polarization free energy of solvation -70.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds