Wall clock time and date at job start Mon Mar 30 2020 01:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37719 * 119.96097 * 2 1 4 4 C 1.39752 * 119.91708 * 180.28561 * 3 2 1 5 5 C 1.47563 * 120.08622 * 180.02562 * 4 3 2 6 6 O 1.21612 * 119.99742 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99849 * 179.97438 * 5 4 3 8 8 C 1.36886 * 119.99992 * 180.02562 * 7 5 4 9 9 H 1.08002 * 119.99417 * 359.97438 * 8 7 5 10 10 C 1.39035 * 120.00126 * 179.97438 * 8 7 5 11 11 N 1.31370 * 120.00041 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99662 * 179.97438 * 10 8 7 13 13 H 1.48491 * 109.47382 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46906 * 120.00347 * 12 10 8 15 15 H 1.48495 * 109.46941 * 239.99633 * 12 10 8 16 16 C 1.39787 * 119.83107 * 359.97438 * 4 3 2 17 17 C 1.37683 * 119.91504 * 0.02562 * 16 4 3 18 18 C 1.39049 * 119.95414 * 180.28191 * 2 1 3 19 19 N 1.39860 * 119.91491 * 359.69663 * 18 2 1 20 20 C 1.34805 * 126.84778 * 132.81572 * 19 18 2 21 21 N 1.30827 * 108.02203 * 179.97438 * 20 19 18 22 22 C 1.33289 * 109.84514 * 0.02562 * 21 20 19 23 23 N 1.30730 * 109.01527 * 359.75013 * 22 21 20 24 24 H 1.09002 * 109.46779 * 264.40589 * 1 2 3 25 25 H 1.09002 * 109.47056 * 24.39661 * 1 2 3 26 26 H 1.08997 * 109.47463 * 144.40403 * 1 2 3 27 27 H 1.08000 * 120.04148 * 0.25555 * 3 2 1 28 28 H 0.96997 * 120.00483 * 359.97438 * 7 5 4 29 29 H 0.96998 * 119.99989 * 179.97438 * 11 10 8 30 30 H 1.07998 * 120.04378 * 180.02562 * 16 4 3 31 31 H 1.08002 * 119.95984 * 180.02562 * 17 16 4 32 32 H 1.07997 * 125.98853 * 359.94032 * 20 19 18 33 33 H 1.07997 * 125.49145 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1932 0.0000 4 6 3.5923 1.1921 -0.0060 5 6 4.3330 2.4683 -0.0055 6 8 3.7273 3.5229 -0.0002 7 7 5.6807 2.4653 -0.0108 8 6 6.3678 3.6491 -0.0098 9 1 5.8299 4.5856 -0.0051 10 6 7.7582 3.6460 -0.0147 11 7 8.4124 2.5068 -0.0209 12 14 8.6958 5.2617 -0.0140 13 1 7.7334 6.3925 -0.0071 14 1 9.5541 5.3353 1.1957 15 1 9.5454 5.3414 -1.2292 16 6 4.2867 -0.0211 -0.0115 17 6 3.5921 -1.2099 -0.0115 18 6 2.2013 -1.2047 -0.0059 19 7 1.4992 -2.4144 -0.0055 20 6 1.7239 -3.4798 -0.8002 21 7 0.8559 -4.4076 -0.4883 22 6 0.0650 -3.9756 0.4938 23 7 0.4228 -2.7631 0.8266 24 1 -0.3633 -0.1002 1.0228 25 1 -0.3633 0.9359 -0.4245 26 1 -0.3634 -0.8356 -0.5981 27 1 1.6548 2.1285 0.0042 28 1 6.1638 1.6242 -0.0146 29 1 9.3824 2.5046 -0.0247 30 1 5.3667 -0.0259 -0.0158 31 1 4.1279 -2.1476 -0.0153 32 1 2.4863 -3.5541 -1.5615 33 1 -0.7387 -4.5384 0.9451 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173373400.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:13 Heat of formation + Delta-G solvation = 64.796182 kcal Electronic energy + Delta-G solvation = -19527.877891 eV Core-core repulsion = 16361.870598 eV Total energy + Delta-G solvation = -3166.007293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.28826 -41.04019 -39.43271 -36.17636 -35.17685 -34.03232 -33.24802 -32.27228 -30.85760 -28.18480 -27.22902 -25.20323 -23.57374 -22.99054 -22.34115 -21.00858 -20.19789 -19.18889 -18.15364 -17.27059 -16.82856 -16.50793 -16.03082 -15.63079 -15.53368 -15.45238 -15.09761 -14.87572 -14.64457 -14.35841 -13.71568 -13.56442 -13.48735 -13.10625 -12.95270 -12.79194 -12.51610 -12.27247 -12.12148 -11.64147 -11.38250 -11.12870 -10.86784 -10.58508 -10.15911 -9.99380 -9.62115 -8.59507 -6.02988 -0.52627 0.19692 0.67888 1.20646 1.37820 1.42318 1.56313 1.88848 1.95703 2.24722 2.66468 3.00341 3.24144 3.43760 3.58106 3.62634 3.86272 3.97692 4.04518 4.20261 4.29428 4.44230 4.56823 4.66400 4.78671 5.00140 5.06971 5.15133 5.26020 5.31637 5.34810 5.40985 5.57980 5.88995 5.99943 6.45806 6.99160 7.01186 7.38447 7.95606 8.57417 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.040264 B = 0.003776 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.245737 B = 7412.619385 C = 8009.011988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.072 4.072 3 C -0.069 4.069 4 C -0.103 4.103 5 C 0.459 3.541 6 O -0.637 6.637 7 N -0.545 5.545 8 C -0.336 4.336 9 H 0.084 0.916 10 C -0.005 4.005 11 N -0.905 5.905 12 Si 0.998 3.002 13 H -0.272 1.272 14 H -0.268 1.268 15 H -0.267 1.267 16 C -0.087 4.087 17 C -0.095 4.095 18 C 0.133 3.867 19 N -0.336 5.336 20 C 0.270 3.730 21 N -0.562 5.562 22 C 0.200 3.800 23 N -0.340 5.340 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.132 0.868 28 H 0.400 0.600 29 H 0.284 0.716 30 H 0.144 0.856 31 H 0.169 0.831 32 H 0.256 0.744 33 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.487 -13.318 -1.318 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.074 4.074 3 C -0.090 4.090 4 C -0.107 4.107 5 C 0.248 3.752 6 O -0.527 6.527 7 N -0.179 5.179 8 C -0.466 4.466 9 H 0.102 0.898 10 C -0.208 4.208 11 N -0.544 5.544 12 Si 0.820 3.180 13 H -0.197 1.197 14 H -0.193 1.193 15 H -0.192 1.192 16 C -0.107 4.107 17 C -0.115 4.115 18 C 0.041 3.959 19 N -0.120 5.120 20 C -0.024 4.024 21 N -0.289 5.289 22 C -0.102 4.102 23 N -0.165 5.165 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.236 0.764 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.187 0.813 32 H 0.272 0.728 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -10.003 -12.568 -0.899 16.088 hybrid contribution 0.983 0.615 -0.024 1.160 sum -9.020 -11.953 -0.923 15.003 Atomic orbital electron populations 1.20665 0.88738 1.02806 1.03094 1.19834 0.97686 0.90574 0.99315 1.20969 0.92368 0.97972 0.97650 1.20193 0.94673 0.93112 1.02680 1.18372 0.82646 0.89198 0.84948 1.90569 1.68823 1.34258 1.59044 1.41896 1.04847 1.09512 1.61663 1.19846 0.89871 0.86995 1.49868 0.89761 1.26154 0.96758 1.02463 0.95378 1.69625 1.09897 1.27075 1.47782 0.84804 0.77717 0.76840 0.78615 1.19680 1.19311 1.19185 1.21294 1.00798 0.90457 0.98189 1.21085 0.90726 0.99673 1.00006 1.17395 0.90371 0.82328 1.05816 1.47523 1.25153 1.12114 1.27251 1.27062 0.98576 0.81518 0.95285 1.70675 1.09154 1.30736 1.18306 1.26804 0.99559 0.90527 0.93308 1.78234 1.03783 1.17738 1.16730 0.90274 0.90356 0.91978 0.85043 0.76406 0.90607 0.83862 0.81345 0.72796 0.73430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.30 8.86 71.24 0.63 -1.67 16 2 C -0.07 -2.02 5.89 -19.79 -0.12 -2.14 16 3 C -0.07 -2.36 9.21 22.51 0.21 -2.15 16 4 C -0.10 -3.89 5.88 -20.08 -0.12 -4.01 16 5 C 0.46 22.58 7.71 86.70 0.67 23.25 16 6 O -0.64 -36.20 15.91 -4.07 -0.06 -36.26 16 7 N -0.54 -27.65 5.23 -309.87 -1.62 -29.27 16 8 C -0.34 -18.62 9.68 84.10 0.81 -17.81 16 9 H 0.08 4.99 7.15 -2.91 -0.02 4.97 16 10 C -0.01 -0.28 5.50 84.95 0.47 0.19 16 11 N -0.90 -46.07 13.05 21.68 0.28 -45.79 16 12 Si 1.00 40.85 29.55 68.60 2.03 42.88 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 15 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 16 C -0.09 -2.63 9.53 22.51 0.21 -2.41 16 17 C -0.09 -2.22 9.63 22.34 0.22 -2.01 16 18 C 0.13 3.37 6.28 38.26 0.24 3.61 16 19 N -0.34 -7.66 3.11 -191.13 -0.59 -8.25 16 20 C 0.27 4.91 12.31 180.24 2.22 7.13 16 21 N -0.56 -11.58 11.19 -203.68 -2.28 -13.86 16 22 C 0.20 3.87 13.03 180.75 2.35 6.22 16 23 N -0.34 -8.13 11.10 -61.21 -0.68 -8.81 16 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 26 H 0.06 1.46 7.22 -2.39 -0.02 1.44 16 27 H 0.13 4.68 7.64 -2.91 -0.02 4.66 16 28 H 0.40 18.74 5.92 -92.71 -0.55 18.19 16 29 H 0.28 13.37 8.31 -92.71 -0.77 12.59 16 30 H 0.14 4.17 6.39 -2.91 -0.02 4.16 16 31 H 0.17 2.71 8.03 -2.91 -0.02 2.69 16 32 H 0.26 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.25 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -69.44 296.93 5.48 -63.96 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.61 Total: 27.20 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 7.80 Total: 8.20 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -4.89 Total: -105.97 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.06 Total: -36.26 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -69.44 5.48 -63.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173373400.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.754 kcal (2) G-P(sol) polarization free energy of solvation -69.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds