Wall clock time and date at job start Mon Mar 30 2020 01:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37732 * 120.03886 * 2 1 4 4 C 1.39044 * 120.08125 * 180.02562 * 3 2 1 5 5 N 1.39861 * 119.91359 * 179.97438 * 4 3 2 6 6 C 1.34807 * 126.84892 * 179.70928 * 5 4 3 7 7 N 1.30814 * 108.02325 * 179.89585 * 6 5 4 8 8 C 1.33294 * 109.84637 * 0.38194 * 7 6 5 9 9 N 1.30725 * 109.01482 * 359.76741 * 8 7 6 10 10 C 1.39081 * 120.16881 * 0.02562 * 4 3 2 11 11 C 1.37689 * 120.08904 * 359.97438 * 10 4 3 12 12 C 1.39748 * 120.04283 * 180.02562 * 2 1 3 13 13 C 1.47558 * 120.08519 * 359.69698 * 12 2 1 14 14 O 1.21607 * 120.00315 * 353.99811 * 13 12 2 15 15 N 1.34781 * 119.99737 * 173.99157 * 13 12 2 16 16 C 1.36881 * 119.99711 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00124 * 359.97438 * 16 15 13 18 18 C 1.39036 * 119.99542 * 180.02562 * 16 15 13 19 19 N 1.31374 * 119.99495 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00451 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47071 * 90.00581 * 20 18 16 22 22 H 1.48498 * 109.47324 * 210.00418 * 20 18 16 23 23 H 1.48493 * 109.47179 * 330.00599 * 20 18 16 24 24 H 1.08998 * 109.46980 * 263.41813 * 1 2 3 25 25 H 1.09001 * 109.47402 * 23.42509 * 1 2 3 26 26 H 1.09002 * 109.46954 * 143.42320 * 1 2 3 27 27 H 1.07999 * 119.95927 * 0.02562 * 3 2 1 28 28 H 1.08001 * 125.98591 * 0.02562 * 6 5 4 29 29 H 1.08007 * 125.49032 * 179.75808 * 8 7 6 30 30 H 1.07998 * 119.95384 * 179.97438 * 10 4 3 31 31 H 1.08002 * 120.04309 * 180.02562 * 11 10 4 32 32 H 0.97004 * 120.00126 * 0.02562 * 15 13 12 33 33 H 0.97007 * 119.99944 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1923 0.0000 4 6 3.5869 1.1934 -0.0005 5 7 4.2835 2.4062 -0.0011 6 6 5.6216 2.5699 0.0038 7 7 5.8722 3.8538 -0.0009 8 6 4.7284 4.5382 -0.0005 9 7 3.7283 3.6963 -0.0005 10 6 4.2868 -0.0085 -0.0016 11 6 3.6046 -1.2046 -0.0016 12 6 2.2067 -1.2097 -0.0005 13 6 1.4718 -2.4893 0.0056 14 8 0.2612 -2.4947 0.1213 15 7 2.1422 -3.6520 -0.1171 16 6 1.4604 -4.8389 -0.1118 17 1 0.3853 -4.8437 -0.0090 18 6 2.1521 -6.0384 -0.2379 19 7 1.4977 -7.1776 -0.2334 20 14 4.0116 -6.0303 -0.4150 21 1 4.6373 -6.0979 0.9301 22 1 4.4375 -7.2042 -1.2186 23 1 4.4384 -4.7823 -1.0973 24 1 -0.3633 -0.1178 1.0209 25 1 -0.3634 0.9430 -0.4085 26 1 -0.3633 -0.8253 -0.6124 27 1 1.6565 2.1276 0.0004 28 1 6.3577 1.7796 0.0086 29 1 4.6418 5.6148 -0.0002 30 1 5.3668 -0.0037 -0.0024 31 1 4.1488 -2.1374 -0.0020 32 1 3.1079 -3.6478 -0.2090 33 1 1.9802 -8.0145 -0.3217 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173373714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:05 Heat of formation + Delta-G solvation = 92.782042 kcal Electronic energy + Delta-G solvation = -19641.616086 eV Core-core repulsion = 16476.822351 eV Total energy + Delta-G solvation = -3164.793735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.48796 -39.85111 -37.84941 -34.66900 -34.09693 -32.60375 -31.82472 -31.32543 -29.80231 -27.15058 -25.30047 -24.06824 -22.96726 -21.67507 -20.83613 -19.77534 -18.79764 -18.06764 -16.61882 -16.01607 -15.80795 -15.42475 -14.97221 -14.42500 -14.36738 -14.19929 -13.82992 -13.13046 -12.98276 -12.95823 -12.62226 -12.50651 -12.26863 -12.12673 -11.59629 -11.36606 -11.01963 -10.76941 -10.70504 -10.34923 -10.17594 -10.10600 -9.78509 -8.86003 -8.52410 -8.43415 -8.27627 -6.57392 -3.99449 0.46053 1.30357 1.74744 2.01632 2.66890 2.87198 2.92094 3.01049 3.35348 3.89142 4.00716 4.16992 4.23163 4.39634 4.59598 4.76601 4.87994 5.09807 5.19856 5.26643 5.42052 5.57313 5.79633 5.86736 6.04140 6.10517 6.18653 6.20927 6.25892 6.41840 6.63300 6.82669 6.99863 7.32580 7.76823 7.93381 8.35490 8.70994 9.16849 9.62571 10.53891 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.004494 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.722872 B = 6229.569973 C = 7210.522847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.016 4.016 3 C -0.116 4.116 4 C 0.139 3.861 5 N -0.319 5.319 6 C 0.257 3.743 7 N -0.542 5.542 8 C 0.199 3.801 9 N -0.313 5.313 10 C -0.139 4.139 11 C -0.082 4.082 12 C -0.098 4.098 13 C 0.471 3.529 14 O -0.570 6.570 15 N -0.566 5.566 16 C -0.297 4.297 17 H 0.126 0.874 18 C 0.043 3.957 19 N -0.861 5.861 20 Si 0.878 3.122 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.267 1.267 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.106 0.894 27 H 0.138 0.862 28 H 0.222 0.778 29 H 0.221 0.779 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.371 0.629 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.134 15.551 -0.065 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.019 4.019 3 C -0.136 4.136 4 C 0.046 3.954 5 N -0.103 5.103 6 C -0.038 4.038 7 N -0.268 5.268 8 C -0.103 4.103 9 N -0.139 5.139 10 C -0.160 4.160 11 C -0.102 4.102 12 C -0.102 4.102 13 C 0.261 3.739 14 O -0.455 6.455 15 N -0.202 5.202 16 C -0.426 4.426 17 H 0.144 0.856 18 C -0.162 4.162 19 N -0.499 5.499 20 Si 0.703 3.297 21 H -0.191 1.191 22 H -0.196 1.196 23 H -0.192 1.192 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.124 0.876 27 H 0.156 0.844 28 H 0.238 0.762 29 H 0.237 0.763 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.205 0.795 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.884 15.613 -0.009 17.491 hybrid contribution 1.782 -0.385 -0.134 1.828 sum 9.666 15.228 -0.143 18.038 Atomic orbital electron populations 1.21072 0.89273 1.02834 1.04075 1.19911 0.97386 0.90331 0.94244 1.20719 0.91164 0.98930 1.02776 1.17568 0.91777 0.81186 1.04859 1.47667 1.05646 1.04986 1.51962 1.26188 0.85232 0.95978 0.96373 1.70612 1.29321 1.02336 1.24580 1.26141 0.85019 1.01263 0.97888 1.78135 1.22679 0.87107 1.26022 1.20563 0.99793 0.90130 1.05533 1.21119 0.93477 0.97385 0.98250 1.20336 0.93101 0.94996 1.01791 1.17417 0.87518 0.82642 0.86357 1.90601 1.13175 1.86091 1.55681 1.42254 1.08374 1.06385 1.63216 1.19576 0.95900 0.80852 1.46259 0.85645 1.25148 0.98990 0.94951 0.97145 1.69600 1.36491 0.97709 1.46086 0.86686 0.84727 0.78923 0.79360 1.19081 1.19622 1.19211 0.90607 0.93085 0.87601 0.84382 0.76167 0.76253 0.85086 0.84923 0.79451 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 8.72 36.01 0.31 -1.56 16 2 C -0.02 -0.27 5.91 -104.24 -0.62 -0.88 16 3 C -0.12 -1.68 9.29 -39.47 -0.37 -2.04 16 4 C 0.14 1.86 6.70 -83.58 -0.56 1.30 16 5 N -0.32 -4.05 3.81 -11.77 -0.04 -4.09 16 6 C 0.26 2.70 11.97 -90.33 -1.08 1.62 16 7 N -0.54 -6.31 11.19 -15.73 -0.18 -6.49 16 8 C 0.20 2.17 13.03 -91.76 -1.20 0.97 16 9 N -0.31 -4.11 12.03 29.30 0.35 -3.76 16 10 C -0.14 -1.67 9.45 -39.47 -0.37 -2.04 16 11 C -0.08 -1.18 9.52 -39.20 -0.37 -1.55 16 12 C -0.10 -1.73 5.88 -104.95 -0.62 -2.35 16 13 C 0.47 10.44 7.64 -12.46 -0.10 10.35 16 14 O -0.57 -14.33 12.91 5.27 0.07 -14.26 16 15 N -0.57 -12.85 5.03 -11.92 -0.06 -12.91 16 16 C -0.30 -7.92 10.16 -15.00 -0.15 -8.07 16 17 H 0.13 3.80 7.38 -52.49 -0.39 3.42 16 18 C 0.04 1.11 5.50 -17.45 -0.10 1.02 16 19 N -0.86 -23.61 13.95 55.50 0.77 -22.83 16 20 Si 0.88 17.93 27.74 -169.99 -4.71 13.21 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -4.90 6.52 56.52 0.37 -4.53 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.05 0.67 8.04 -51.93 -0.42 0.26 16 26 H 0.11 1.99 5.86 -51.93 -0.30 1.69 16 27 H 0.14 1.90 7.72 -52.49 -0.41 1.50 16 28 H 0.22 1.36 7.08 -52.49 -0.37 0.99 16 29 H 0.22 1.48 8.06 -52.48 -0.42 1.05 16 30 H 0.13 1.07 6.78 -52.49 -0.36 0.71 16 31 H 0.13 1.72 6.44 -52.49 -0.34 1.38 16 32 H 0.37 7.33 3.82 -40.82 -0.16 7.18 16 33 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 288.78 15.07 4.35 4.35 Total: -1.00 -31.54 288.78 -7.41 -38.95 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -2.75 Total: 11.06 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -5.21 Total: -3.23 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.85 Total: -50.08 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.07 Total: -14.26 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -4.71 Total: 13.21 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.54 -7.41 -38.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173373714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.734 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds