Wall clock time and date at job start Mon Mar 30 2020 01:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37732 * 120.03886 * 2 1 4 4 C 1.39044 * 120.08125 * 180.02562 * 3 2 1 5 5 N 1.39861 * 119.91359 * 179.97438 * 4 3 2 6 6 C 1.34807 * 126.84892 * 179.70928 * 5 4 3 7 7 N 1.30814 * 108.02325 * 179.89585 * 6 5 4 8 8 C 1.33294 * 109.84637 * 0.38194 * 7 6 5 9 9 N 1.30725 * 109.01482 * 359.76741 * 8 7 6 10 10 C 1.39081 * 120.16881 * 0.02562 * 4 3 2 11 11 C 1.37689 * 120.08904 * 359.97438 * 10 4 3 12 12 C 1.39748 * 120.04283 * 180.02562 * 2 1 3 13 13 C 1.47558 * 120.08519 * 359.69698 * 12 2 1 14 14 O 1.21607 * 120.00315 * 353.99811 * 13 12 2 15 15 N 1.34781 * 119.99737 * 173.99157 * 13 12 2 16 16 C 1.36881 * 119.99711 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00124 * 359.97438 * 16 15 13 18 18 C 1.39036 * 119.99542 * 180.02562 * 16 15 13 19 19 N 1.31374 * 119.99495 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00451 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47071 * 90.00581 * 20 18 16 22 22 H 1.48498 * 109.47324 * 210.00418 * 20 18 16 23 23 H 1.48493 * 109.47179 * 330.00599 * 20 18 16 24 24 H 1.08998 * 109.46980 * 263.41813 * 1 2 3 25 25 H 1.09001 * 109.47402 * 23.42509 * 1 2 3 26 26 H 1.09002 * 109.46954 * 143.42320 * 1 2 3 27 27 H 1.07999 * 119.95927 * 0.02562 * 3 2 1 28 28 H 1.08001 * 125.98591 * 0.02562 * 6 5 4 29 29 H 1.08007 * 125.49032 * 179.75808 * 8 7 6 30 30 H 1.07998 * 119.95384 * 179.97438 * 10 4 3 31 31 H 1.08002 * 120.04309 * 180.02562 * 11 10 4 32 32 H 0.97004 * 120.00126 * 0.02562 * 15 13 12 33 33 H 0.97007 * 119.99944 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1923 0.0000 4 6 3.5869 1.1934 -0.0005 5 7 4.2835 2.4062 -0.0011 6 6 5.6216 2.5699 0.0038 7 7 5.8722 3.8538 -0.0009 8 6 4.7284 4.5382 -0.0005 9 7 3.7283 3.6963 -0.0005 10 6 4.2868 -0.0085 -0.0016 11 6 3.6046 -1.2046 -0.0016 12 6 2.2067 -1.2097 -0.0005 13 6 1.4718 -2.4893 0.0056 14 8 0.2612 -2.4947 0.1213 15 7 2.1422 -3.6520 -0.1171 16 6 1.4604 -4.8389 -0.1118 17 1 0.3853 -4.8437 -0.0090 18 6 2.1521 -6.0384 -0.2379 19 7 1.4977 -7.1776 -0.2334 20 14 4.0116 -6.0303 -0.4150 21 1 4.6373 -6.0979 0.9301 22 1 4.4375 -7.2042 -1.2186 23 1 4.4384 -4.7823 -1.0973 24 1 -0.3633 -0.1178 1.0209 25 1 -0.3634 0.9430 -0.4085 26 1 -0.3633 -0.8253 -0.6124 27 1 1.6565 2.1276 0.0004 28 1 6.3577 1.7796 0.0086 29 1 4.6418 5.6148 -0.0002 30 1 5.3668 -0.0037 -0.0024 31 1 4.1488 -2.1374 -0.0020 32 1 3.1079 -3.6478 -0.2090 33 1 1.9802 -8.0145 -0.3217 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173373714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:05 Heat of formation + Delta-G solvation = 73.174490 kcal Electronic energy + Delta-G solvation = -19642.466333 eV Core-core repulsion = 16476.822351 eV Total energy + Delta-G solvation = -3165.643982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.34919 -41.23732 -39.36859 -36.33152 -35.35510 -34.14872 -33.24876 -32.31133 -30.96337 -28.46484 -26.89212 -25.30503 -23.95524 -22.75989 -21.91350 -21.41336 -20.47385 -19.03850 -18.21114 -17.10710 -16.91185 -16.66146 -16.31935 -15.90446 -15.60840 -15.32643 -15.15904 -14.59873 -14.37637 -14.27904 -14.17494 -13.72605 -13.39715 -13.35293 -13.03270 -12.85661 -12.47538 -12.12052 -11.97358 -11.78060 -11.54680 -11.20341 -10.97793 -10.35372 -10.28953 -9.95656 -9.45304 -8.47702 -6.04864 -0.60946 0.19920 0.75597 1.11981 1.28361 1.36778 1.43828 1.85324 2.00348 2.19978 2.69533 2.77243 3.20881 3.30190 3.37107 3.67652 3.86298 3.87986 3.99357 4.10057 4.31059 4.44727 4.69085 4.77321 4.82519 4.95393 5.00601 5.15727 5.28079 5.35399 5.47579 5.51546 5.59073 5.90664 5.97108 6.50632 6.79480 6.93868 7.29033 7.85447 8.68786 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.004494 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.722872 B = 6229.569973 C = 7210.522847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.022 4.022 3 C -0.122 4.122 4 C 0.158 3.842 5 N -0.338 5.338 6 C 0.270 3.730 7 N -0.561 5.561 8 C 0.207 3.793 9 N -0.350 5.350 10 C -0.123 4.123 11 C -0.068 4.068 12 C -0.132 4.132 13 C 0.478 3.522 14 O -0.609 6.609 15 N -0.570 5.570 16 C -0.329 4.329 17 H 0.062 0.938 18 C -0.011 4.011 19 N -0.922 5.922 20 Si 0.956 3.044 21 H -0.250 1.250 22 H -0.271 1.271 23 H -0.227 1.227 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.267 0.733 29 H 0.252 0.748 30 H 0.185 0.815 31 H 0.154 0.846 32 H 0.389 0.611 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.075 18.443 -0.253 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.024 4.024 3 C -0.142 4.142 4 C 0.065 3.935 5 N -0.122 5.122 6 C -0.024 4.024 7 N -0.287 5.287 8 C -0.095 4.095 9 N -0.175 5.175 10 C -0.143 4.143 11 C -0.088 4.088 12 C -0.136 4.136 13 C 0.269 3.731 14 O -0.496 6.496 15 N -0.209 5.209 16 C -0.458 4.458 17 H 0.080 0.920 18 C -0.211 4.211 19 N -0.561 5.561 20 Si 0.775 3.225 21 H -0.174 1.174 22 H -0.196 1.196 23 H -0.150 1.150 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.160 0.840 28 H 0.282 0.718 29 H 0.268 0.732 30 H 0.202 0.798 31 H 0.171 0.829 32 H 0.226 0.774 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.831 18.567 -0.197 22.570 hybrid contribution 0.230 -0.873 -0.048 0.904 sum 13.061 17.694 -0.245 21.994 Atomic orbital electron populations 1.20947 0.90134 1.02834 1.03019 1.19895 0.97113 0.90822 0.94588 1.20684 0.92188 0.98060 1.03262 1.17749 0.91428 0.82365 1.01965 1.47705 1.06416 1.04524 1.53529 1.27176 0.84900 0.96740 0.93540 1.70695 1.29563 1.03117 1.25339 1.26863 0.84388 1.02564 0.95674 1.78136 1.24041 0.87703 1.27635 1.20990 1.02200 0.88100 1.03007 1.21344 0.91693 0.99448 0.96309 1.20011 0.94778 0.92526 1.06300 1.18324 0.87355 0.84122 0.83340 1.90588 1.15572 1.87231 1.56233 1.41934 1.08967 1.05108 1.64926 1.19070 0.93717 0.83403 1.49626 0.92031 1.26177 1.05717 0.93521 0.95687 1.69772 1.39359 0.98716 1.48297 0.85498 0.76108 0.80576 0.80345 1.17445 1.19631 1.14962 0.91491 0.90348 0.91004 0.84005 0.71784 0.73183 0.79781 0.82885 0.77389 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.78 8.72 71.24 0.62 -3.15 16 2 C -0.02 -0.71 5.91 -19.62 -0.12 -0.82 16 3 C -0.12 -3.25 9.29 22.34 0.21 -3.04 16 4 C 0.16 3.55 6.70 38.26 0.26 3.81 16 5 N -0.34 -7.03 3.81 -191.14 -0.73 -7.76 16 6 C 0.27 4.14 11.97 180.25 2.16 6.30 16 7 N -0.56 -10.48 11.19 -203.68 -2.28 -12.75 16 8 C 0.21 3.73 13.03 180.74 2.35 6.08 16 9 N -0.35 -8.01 12.03 -61.20 -0.74 -8.75 16 10 C -0.12 -2.21 9.45 22.34 0.21 -2.00 16 11 C -0.07 -1.68 9.52 22.52 0.21 -1.46 16 12 C -0.13 -4.54 5.88 -20.08 -0.12 -4.65 16 13 C 0.48 21.94 7.64 86.70 0.66 22.60 16 14 O -0.61 -32.97 12.91 -4.05 -0.05 -33.02 16 15 N -0.57 -26.38 5.03 -309.87 -1.56 -27.94 16 16 C -0.33 -18.70 10.16 84.10 0.85 -17.84 16 17 H 0.06 4.16 7.38 -2.91 -0.02 4.14 16 18 C -0.01 -0.57 5.50 84.95 0.47 -0.11 16 19 N -0.92 -53.58 13.95 21.68 0.30 -53.28 16 20 Si 0.96 36.08 27.74 68.60 1.90 37.98 16 21 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 22 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.23 -6.97 6.52 99.48 0.65 -6.32 16 24 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.08 2.09 8.04 -2.39 -0.02 2.07 16 26 H 0.07 2.91 5.86 -2.39 -0.01 2.89 16 27 H 0.14 3.65 7.72 -2.91 -0.02 3.63 16 28 H 0.27 1.19 7.08 -2.91 -0.02 1.17 16 29 H 0.25 2.41 8.06 -2.91 -0.02 2.38 16 30 H 0.19 1.40 6.78 -2.91 -0.02 1.38 16 31 H 0.15 3.14 6.44 -2.91 -0.02 3.12 16 32 H 0.39 14.65 3.82 -92.71 -0.35 14.29 16 33 H 0.28 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -77.62 288.78 5.38 -72.24 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.76 Total: 27.57 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 7.77 Total: 5.70 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -5.00 Total: -110.47 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.05 Total: -33.02 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 1.90 Total: 37.98 kcal Total: -77.62 5.38 -72.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173373714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.416 kcal (2) G-P(sol) polarization free energy of solvation -77.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds