Wall clock time and date at job start Mon Mar 30 2020 01:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99633 * 2 1 4 4 H 1.48504 * 109.47373 * 269.99816 * 3 2 1 5 5 H 1.48499 * 109.47502 * 30.00467 * 3 2 1 6 6 H 1.48503 * 109.47088 * 150.00433 * 3 2 1 7 7 C 1.37869 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99970 * 173.70334 * 7 2 1 9 9 C 1.50700 * 120.00282 * 353.69231 * 7 2 1 10 10 C 1.53007 * 115.54693 * 86.11093 * 9 7 2 11 11 O 1.42903 * 109.46872 * 65.11571 * 10 9 7 12 12 C 1.34903 * 116.99745 * 180.02562 * 11 10 9 13 13 O 1.21622 * 120.00172 * 359.97438 * 12 11 10 14 14 C 1.46233 * 119.99577 * 179.97438 * 12 11 10 15 15 C 1.34917 * 119.99608 * 179.97438 * 14 12 11 16 16 C 1.47177 * 120.00042 * 180.02562 * 15 14 12 17 17 C 1.39853 * 120.17451 * 180.02562 * 16 15 14 18 18 C 1.37879 * 119.82534 * 179.97438 * 17 16 15 19 19 C 1.38408 * 120.17297 * 359.97188 * 18 17 16 20 20 C 1.38403 * 120.34843 * 0.02562 * 19 18 17 21 21 C 1.37883 * 120.17162 * 359.97438 * 20 19 18 22 22 C 1.52997 * 117.50228 * 231.78466 * 9 7 2 23 23 C 1.53004 * 117.49990 * 300.45168 * 9 7 2 24 24 H 0.97001 * 120.00172 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46974 * 305.11522 * 10 9 7 26 26 H 1.09000 * 109.46872 * 185.11546 * 10 9 7 27 27 H 1.07995 * 120.00278 * 359.97438 * 14 12 11 28 28 H 1.07995 * 120.00114 * 359.97438 * 15 14 12 29 29 H 1.08005 * 120.08508 * 359.94920 * 17 16 15 30 30 H 1.07997 * 119.91614 * 179.97438 * 18 17 16 31 31 H 1.08007 * 119.82477 * 179.75397 * 19 18 17 32 32 H 1.08001 * 119.91517 * 179.97438 * 20 19 18 33 33 H 1.08006 * 120.08754 * 179.97438 * 21 20 19 34 34 H 1.09004 * 117.49564 * 214.99659 * 22 9 7 35 35 H 1.08998 * 117.49964 * 0.02891 * 22 9 7 36 36 H 1.08999 * 117.49660 * 359.96231 * 23 9 7 37 37 H 1.08997 * 117.50283 * 144.96817 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0797 -1.1967 -0.1031 9 6 1.2580 -2.4952 0.1423 10 6 0.7192 -3.0931 -1.1590 11 8 1.8124 -3.4585 -2.0038 12 6 1.5069 -4.0041 -3.1991 13 8 0.3433 -4.1653 -3.5145 14 6 2.5747 -4.4017 -4.1157 15 6 2.2692 -4.9478 -5.3109 16 6 3.3439 -5.3486 -6.2332 17 6 3.0313 -5.9145 -7.4733 18 6 4.0438 -6.2869 -8.3319 19 6 5.3666 -6.1012 -7.9696 20 6 5.6841 -5.5418 -6.7442 21 6 4.6830 -5.1643 -5.8745 22 6 1.7343 -3.4682 1.2227 23 6 0.4254 -2.6966 1.4101 24 1 -0.4850 0.8400 0.0004 25 1 0.0976 -2.3561 -1.6675 26 1 0.1232 -3.9773 -0.9332 27 1 3.6078 -4.2582 -3.8358 28 1 1.2360 -5.0917 -5.5906 29 1 1.9995 -6.0600 -7.7574 30 1 3.8041 -6.7244 -9.2897 31 1 6.1553 -6.3986 -8.6449 32 1 6.7187 -5.4005 -6.4684 33 1 4.9323 -4.7282 -4.9183 34 1 1.6638 -4.5342 1.0065 35 1 2.5874 -3.1669 1.8306 36 1 0.4182 -1.8882 2.1411 37 1 -0.5062 -3.2547 1.3171 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174746857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:12 Heat of formation + Delta-G solvation = -23.670202 kcal Electronic energy + Delta-G solvation = -19332.069162 eV Core-core repulsion = 16233.473271 eV Total energy + Delta-G solvation = -3098.595891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.85537 -39.26599 -36.87707 -35.33863 -34.13313 -31.94805 -31.24266 -29.93334 -27.03787 -25.38657 -24.23180 -22.83915 -21.51697 -21.07012 -19.32300 -19.05884 -17.72944 -16.70177 -16.53743 -15.69585 -15.48909 -15.31812 -14.74600 -14.56971 -13.92249 -13.66236 -13.60411 -13.24507 -13.06632 -12.50993 -12.20976 -11.93671 -11.58103 -11.48110 -11.12685 -10.97358 -10.85276 -10.53129 -10.48634 -10.28190 -10.10360 -9.79579 -9.54684 -9.20614 -8.80717 -8.45534 -8.42846 -8.19965 -6.05953 -4.11313 0.38512 1.16961 1.86500 3.29259 3.30867 3.36324 3.39836 3.40497 3.72397 4.39905 4.57237 4.62488 4.71524 4.86202 5.14437 5.18484 5.20427 5.23956 5.30752 5.53246 5.68985 5.75737 5.93689 6.00902 6.12688 6.24003 6.25210 6.33182 6.35965 6.47954 6.55046 6.68227 6.71462 6.74736 7.04517 7.26081 7.37833 7.48509 7.87198 8.36682 8.47185 8.90359 9.54529 11.03399 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.003613 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.969019 B = 7748.976317 C = 8266.363408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.113 3.887 11 O -0.326 6.326 12 C 0.484 3.516 13 O -0.524 6.524 14 C -0.168 4.168 15 C -0.034 4.034 16 C -0.069 4.069 17 C -0.097 4.097 18 C -0.125 4.125 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.101 4.101 22 C -0.206 4.206 23 C -0.145 4.145 24 H 0.261 0.739 25 H 0.073 0.927 26 H 0.036 0.964 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.291 -11.462 -13.172 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.528 4.528 8 H 0.081 0.919 9 C 0.037 3.963 10 C 0.039 3.961 11 O -0.240 6.240 12 C 0.331 3.669 13 O -0.417 6.417 14 C -0.186 4.186 15 C -0.052 4.052 16 C -0.069 4.069 17 C -0.115 4.115 18 C -0.143 4.143 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.119 4.119 22 C -0.243 4.243 23 C -0.182 4.182 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.775 -11.349 -13.194 19.062 hybrid contribution 0.179 0.979 0.018 0.995 sum 7.954 -10.371 -13.177 18.559 Atomic orbital electron populations 1.70004 1.05913 1.26688 1.49163 1.25018 0.94858 0.99092 0.94499 0.86588 0.79968 0.83249 0.78201 1.20613 1.21158 1.19716 1.20388 0.93105 0.88352 1.50940 0.91864 1.18773 0.98939 0.94188 0.84352 1.22532 0.85951 0.96883 0.90748 1.86211 1.40964 1.70508 1.26362 1.21234 0.88424 0.75190 0.82102 1.90819 1.21757 1.52697 1.76421 1.22381 0.99086 1.03090 0.94086 1.22374 0.98857 0.92236 0.91733 1.19024 0.92898 1.00342 0.94611 1.21393 0.99781 0.97383 0.92976 1.21096 0.92831 1.00596 0.99747 1.21312 0.96537 0.98673 0.96645 1.21131 0.99464 0.99134 0.94241 1.21558 0.91919 0.98441 0.99994 1.23015 0.98560 0.95721 1.06988 1.22533 0.92279 1.01199 1.02205 0.92914 0.90830 0.94546 0.84197 0.84501 0.85421 0.85779 0.85985 0.85635 0.85003 0.91559 0.90058 0.89420 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.07 12.88 55.43 0.71 -24.36 16 2 C 0.07 1.89 5.38 -17.82 -0.10 1.79 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.49 -13.50 8.77 -34.44 -0.30 -13.80 16 8 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 9 C 0.04 0.96 1.62 -155.66 -0.25 0.71 16 10 C 0.11 2.74 5.20 37.16 0.19 2.93 16 11 O -0.33 -7.34 10.05 -41.05 -0.41 -7.75 16 12 C 0.48 9.62 7.87 33.94 0.27 9.89 16 13 O -0.52 -11.52 16.00 -19.36 -0.31 -11.83 16 14 C -0.17 -2.51 9.54 -37.55 -0.36 -2.87 16 15 C -0.03 -0.43 9.46 -37.13 -0.35 -0.78 16 16 C -0.07 -0.77 5.87 -105.06 -0.62 -1.38 16 17 C -0.10 -0.93 9.80 -39.11 -0.38 -1.31 16 18 C -0.12 -1.03 10.03 -39.65 -0.40 -1.43 16 19 C -0.11 -0.92 10.04 -39.46 -0.40 -1.31 16 20 C -0.12 -1.07 10.03 -39.65 -0.40 -1.47 16 21 C -0.10 -1.05 9.41 -39.11 -0.37 -1.41 16 22 C -0.21 -4.53 9.96 -26.69 -0.27 -4.80 16 23 C -0.14 -3.40 9.37 -26.68 -0.25 -3.65 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.07 1.97 8.13 -51.93 -0.42 1.55 16 26 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 27 H 0.14 1.79 6.08 -52.49 -0.32 1.48 16 28 H 0.14 1.76 7.52 -52.49 -0.39 1.37 16 29 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 30 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 31 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.25 6.17 -52.48 -0.32 0.92 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 36 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 37 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -30.98 329.04 -8.85 -39.83 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.81 Total: 1.90 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -3.97 Total: -18.91 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.71 Total: -24.36 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.72 Total: -19.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.98 -8.85 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174746857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.162 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds