Wall clock time and date at job start Mon Mar 30 2020 01:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99633 * 2 1 4 4 H 1.48504 * 109.47373 * 269.99816 * 3 2 1 5 5 H 1.48499 * 109.47502 * 30.00467 * 3 2 1 6 6 H 1.48503 * 109.47088 * 150.00433 * 3 2 1 7 7 C 1.37869 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99970 * 173.70334 * 7 2 1 9 9 C 1.50700 * 120.00282 * 353.69231 * 7 2 1 10 10 C 1.53007 * 115.54693 * 86.11093 * 9 7 2 11 11 O 1.42903 * 109.46872 * 65.11571 * 10 9 7 12 12 C 1.34903 * 116.99745 * 180.02562 * 11 10 9 13 13 O 1.21622 * 120.00172 * 359.97438 * 12 11 10 14 14 C 1.46233 * 119.99577 * 179.97438 * 12 11 10 15 15 C 1.34917 * 119.99608 * 179.97438 * 14 12 11 16 16 C 1.47177 * 120.00042 * 180.02562 * 15 14 12 17 17 C 1.39853 * 120.17451 * 180.02562 * 16 15 14 18 18 C 1.37879 * 119.82534 * 179.97438 * 17 16 15 19 19 C 1.38408 * 120.17297 * 359.97188 * 18 17 16 20 20 C 1.38403 * 120.34843 * 0.02562 * 19 18 17 21 21 C 1.37883 * 120.17162 * 359.97438 * 20 19 18 22 22 C 1.52997 * 117.50228 * 231.78466 * 9 7 2 23 23 C 1.53004 * 117.49990 * 300.45168 * 9 7 2 24 24 H 0.97001 * 120.00172 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46974 * 305.11522 * 10 9 7 26 26 H 1.09000 * 109.46872 * 185.11546 * 10 9 7 27 27 H 1.07995 * 120.00278 * 359.97438 * 14 12 11 28 28 H 1.07995 * 120.00114 * 359.97438 * 15 14 12 29 29 H 1.08005 * 120.08508 * 359.94920 * 17 16 15 30 30 H 1.07997 * 119.91614 * 179.97438 * 18 17 16 31 31 H 1.08007 * 119.82477 * 179.75397 * 19 18 17 32 32 H 1.08001 * 119.91517 * 179.97438 * 20 19 18 33 33 H 1.08006 * 120.08754 * 179.97438 * 21 20 19 34 34 H 1.09004 * 117.49564 * 214.99659 * 22 9 7 35 35 H 1.08998 * 117.49964 * 0.02891 * 22 9 7 36 36 H 1.08999 * 117.49660 * 359.96231 * 23 9 7 37 37 H 1.08997 * 117.50283 * 144.96817 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0797 -1.1967 -0.1031 9 6 1.2580 -2.4952 0.1423 10 6 0.7192 -3.0931 -1.1590 11 8 1.8124 -3.4585 -2.0038 12 6 1.5069 -4.0041 -3.1991 13 8 0.3433 -4.1653 -3.5145 14 6 2.5747 -4.4017 -4.1157 15 6 2.2692 -4.9478 -5.3109 16 6 3.3439 -5.3486 -6.2332 17 6 3.0313 -5.9145 -7.4733 18 6 4.0438 -6.2869 -8.3319 19 6 5.3666 -6.1012 -7.9696 20 6 5.6841 -5.5418 -6.7442 21 6 4.6830 -5.1643 -5.8745 22 6 1.7343 -3.4682 1.2227 23 6 0.4254 -2.6966 1.4101 24 1 -0.4850 0.8400 0.0004 25 1 0.0976 -2.3561 -1.6675 26 1 0.1232 -3.9773 -0.9332 27 1 3.6078 -4.2582 -3.8358 28 1 1.2360 -5.0917 -5.5906 29 1 1.9995 -6.0600 -7.7574 30 1 3.8041 -6.7244 -9.2897 31 1 6.1553 -6.3986 -8.6449 32 1 6.7187 -5.4005 -6.4684 33 1 4.9323 -4.7282 -4.9183 34 1 1.6638 -4.5342 1.0065 35 1 2.5874 -3.1669 1.8306 36 1 0.4182 -1.8882 2.1411 37 1 -0.5062 -3.2547 1.3171 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174746857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:12 Heat of formation + Delta-G solvation = -38.444855 kcal Electronic energy + Delta-G solvation = -19332.709839 eV Core-core repulsion = 16233.473271 eV Total energy + Delta-G solvation = -3099.236568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.42784 -40.08380 -38.66649 -37.07250 -35.17654 -34.03152 -31.93196 -30.90724 -28.77673 -27.39458 -25.41940 -23.60627 -23.02348 -22.47318 -21.23242 -20.32726 -19.01257 -18.38982 -17.64078 -17.33306 -17.18800 -16.56020 -16.11619 -15.79609 -15.48225 -14.96059 -14.50278 -14.27333 -14.14131 -14.03537 -13.86353 -13.58082 -13.12713 -12.90728 -12.83351 -12.38439 -12.19448 -12.10201 -11.88006 -11.75161 -11.65544 -11.44827 -11.41678 -10.77788 -10.50168 -10.10183 -9.88999 -9.31598 -8.14667 -6.26347 -0.60636 0.48882 0.85821 1.41346 1.42294 1.53057 1.86543 1.99134 2.41906 2.94486 3.13979 3.39742 3.64842 3.80106 4.01780 4.09918 4.13504 4.17953 4.33868 4.37768 4.45741 4.50720 4.54032 4.64998 4.77224 4.94504 4.95483 4.99184 5.15166 5.16994 5.23147 5.43535 5.53166 5.57256 5.58204 5.62914 5.68009 5.73854 6.03782 6.34640 6.78913 6.81759 7.42500 8.94306 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.003613 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.969019 B = 7748.976317 C = 8266.363408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.056 0.944 9 C 0.003 3.997 10 C 0.126 3.874 11 O -0.338 6.338 12 C 0.482 3.518 13 O -0.556 6.556 14 C -0.201 4.201 15 C 0.006 3.994 16 C -0.100 4.100 17 C -0.099 4.099 18 C -0.130 4.130 19 C -0.105 4.105 20 C -0.131 4.131 21 C -0.109 4.109 22 C -0.177 4.177 23 C -0.146 4.146 24 H 0.261 0.739 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.159 0.841 28 H 0.134 0.866 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.134 0.866 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.359 -12.536 -14.830 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.780 3.220 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.003 3.997 10 C 0.052 3.948 11 O -0.253 6.253 12 C 0.331 3.669 13 O -0.451 6.451 14 C -0.219 4.219 15 C -0.012 4.012 16 C -0.100 4.100 17 C -0.117 4.117 18 C -0.147 4.147 19 C -0.123 4.123 20 C -0.149 4.149 21 C -0.127 4.127 22 C -0.214 4.214 23 C -0.183 4.183 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.177 0.823 28 H 0.152 0.848 29 H 0.158 0.842 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.152 0.848 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.861 -12.435 -14.854 21.737 hybrid contribution -0.390 1.180 0.316 1.283 sum 9.471 -11.255 -14.538 20.681 Atomic orbital electron populations 1.70116 1.07203 1.27354 1.50082 1.25757 0.95641 1.02273 0.94196 0.85616 0.79007 0.79262 0.78156 1.20473 1.20694 1.18817 1.20649 0.92998 0.89837 1.50921 0.92588 1.18884 1.00654 0.94830 0.85345 1.22137 0.86069 0.96074 0.90521 1.86206 1.40310 1.71249 1.27550 1.22056 0.89324 0.74013 0.81536 1.90787 1.23262 1.54300 1.76744 1.22232 0.98367 1.06968 0.94343 1.22555 0.99517 0.88431 0.90724 1.19022 0.92687 1.02929 0.95318 1.21661 1.01109 0.96516 0.92424 1.21462 0.92629 1.00103 1.00540 1.21754 0.97339 0.96705 0.96499 1.21446 1.00174 0.98890 0.94350 1.21744 0.92014 0.98361 1.00571 1.23025 0.97670 0.96397 1.04351 1.22472 0.93610 1.01286 1.00939 0.92981 0.94590 0.93707 0.82345 0.84787 0.84159 0.83136 0.83152 0.83590 0.84802 0.89151 0.89445 0.91060 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.02 12.88 21.44 0.28 -52.74 16 2 C 0.02 1.20 5.38 84.65 0.46 1.66 16 3 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.51 -28.35 8.77 25.60 0.22 -28.12 16 8 H 0.06 3.12 7.82 -2.91 -0.02 3.10 16 9 C 0.00 0.17 1.62 -52.92 -0.09 0.08 16 10 C 0.13 6.35 5.20 71.98 0.37 6.72 16 11 O -0.34 -15.69 10.05 -58.18 -0.58 -16.27 16 12 C 0.48 19.77 7.87 69.90 0.55 20.32 16 13 O -0.56 -25.39 16.00 19.44 0.31 -25.08 16 14 C -0.20 -6.07 9.54 23.59 0.22 -5.84 16 15 C 0.01 0.16 9.46 23.86 0.23 0.39 16 16 C -0.10 -2.08 5.87 -20.15 -0.12 -2.20 16 17 C -0.10 -1.67 9.80 22.58 0.22 -1.45 16 18 C -0.13 -1.70 10.03 22.23 0.22 -1.48 16 19 C -0.11 -1.31 10.04 22.35 0.22 -1.08 16 20 C -0.13 -1.93 10.03 22.22 0.22 -1.70 16 21 C -0.11 -2.07 9.41 22.58 0.21 -1.85 16 22 C -0.18 -7.66 9.96 30.62 0.30 -7.36 16 23 C -0.15 -6.88 9.37 30.62 0.29 -6.59 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.04 2.03 8.13 -2.39 -0.02 2.01 16 26 H 0.04 2.11 8.08 -2.39 -0.02 2.09 16 27 H 0.16 4.07 6.08 -2.91 -0.02 4.05 16 28 H 0.13 3.45 7.52 -2.91 -0.02 3.42 16 29 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 31 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.13 2.38 6.17 -2.91 -0.02 2.36 16 34 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 35 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 36 H 0.07 3.56 8.14 -2.39 -0.02 3.54 16 37 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -67.95 329.04 6.64 -61.31 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.06 Total: 15.38 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 3.55 Total: -28.50 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.28 Total: -52.74 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.27 Total: -41.35 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.95 6.64 -61.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174746857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.864 kcal (2) G-P(sol) polarization free energy of solvation -67.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds