Wall clock time and date at job start Mon Mar 30 2020 01:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40431 * 126.83518 * 2 1 4 4 C 1.30632 * 106.96829 * 180.10604 * 3 2 1 5 5 N 1.33305 * 109.10636 * 359.62539 * 4 3 2 6 6 C 1.31507 * 109.71780 * 0.24352 * 5 4 3 7 7 N 1.38711 * 126.06810 * 180.02562 * 6 5 4 8 8 C 1.34782 * 119.99264 * 359.97363 * 7 6 5 9 9 O 1.21542 * 120.00032 * 359.97438 * 8 7 6 10 10 C 1.47839 * 119.99249 * 180.02562 * 8 7 6 11 11 C 1.39932 * 120.03217 * 359.72570 * 10 8 7 12 12 C 1.38322 * 120.35679 * 179.71722 * 11 10 8 13 13 C 1.37761 * 120.41497 * 0.55726 * 12 11 10 14 14 C 1.40752 * 120.04026 * 359.72370 * 13 12 11 15 15 C 1.41441 * 120.17210 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00310 * 334.92015 * 15 14 13 17 17 C 1.39940 * 119.99804 * 154.92993 * 15 14 13 18 18 N 1.30828 * 119.99760 * 342.57477 * 17 15 14 19 19 Si 1.86796 * 120.00042 * 162.58121 * 17 15 14 20 20 H 1.48503 * 109.47139 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47139 * 119.99646 * 19 17 15 22 22 H 1.48504 * 109.47250 * 239.99667 * 19 17 15 23 23 C 1.39022 * 120.02192 * 179.97438 * 10 8 7 24 24 H 1.08996 * 109.47385 * 270.31495 * 1 2 3 25 25 H 1.09010 * 109.46757 * 30.31256 * 1 2 3 26 26 H 1.08997 * 109.47142 * 150.31340 * 1 2 3 27 27 H 1.07999 * 125.44875 * 179.89189 * 4 3 2 28 28 H 0.96997 * 120.00535 * 179.97438 * 7 6 5 29 29 H 1.08005 * 119.82585 * 359.97438 * 11 10 8 30 30 H 1.08007 * 119.79592 * 180.26204 * 12 11 10 31 31 H 1.07999 * 119.97954 * 179.74100 * 13 12 11 32 32 H 0.96999 * 119.99334 * 180.02562 * 18 17 15 33 33 H 1.08001 * 120.20724 * 359.97438 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3069 1.1240 0.0000 4 6 3.5354 0.6800 -0.0023 5 7 3.5178 -0.6529 0.0045 6 6 2.2740 -1.0801 0.0060 7 7 1.8659 -2.4058 0.0130 8 6 2.7834 -3.3932 0.0185 9 8 3.9681 -3.1219 0.0169 10 6 2.3484 -4.8061 0.0255 11 6 0.9846 -5.1190 0.0321 12 6 0.5701 -6.4387 0.0327 13 6 1.4945 -7.4600 0.0384 14 6 2.8707 -7.1648 0.0377 15 6 3.8223 -8.2112 0.0430 16 1 3.5587 -9.1789 0.4437 17 6 5.1055 -7.9927 -0.4709 18 7 5.3315 -6.9677 -1.2519 19 14 6.4954 -9.1646 -0.0419 20 1 5.9830 -10.2343 0.8516 21 1 7.0318 -9.7728 -1.2860 22 1 7.5766 -8.4179 0.6501 23 6 3.2942 -5.8250 0.0307 24 1 -0.3634 0.0056 1.0276 25 1 -0.3633 0.8873 -0.5187 26 1 -0.3633 -0.8928 -0.5089 27 1 4.4235 1.2946 -0.0046 28 1 0.9204 -2.6223 0.0139 29 1 0.2515 -4.3259 0.0325 30 1 -0.4849 -6.6699 0.0335 31 1 1.1631 -8.4879 0.0430 32 1 6.2208 -6.8165 -1.6083 33 1 4.3480 -5.5883 0.0292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177686383.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:24 Heat of formation + Delta-G solvation = 90.557905 kcal Electronic energy + Delta-G solvation = -19763.098520 eV Core-core repulsion = 16598.208339 eV Total energy + Delta-G solvation = -3164.890181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.99775 -39.35982 -37.17111 -34.92508 -33.85028 -33.68449 -30.81153 -29.70708 -29.49789 -27.29353 -25.45839 -23.74888 -22.12105 -21.24745 -20.81613 -19.49159 -18.31260 -17.50842 -16.20661 -15.94878 -15.82899 -15.18741 -14.80295 -14.37815 -14.31315 -13.96599 -13.37550 -13.24769 -13.20230 -12.84459 -12.63220 -11.80105 -11.77574 -11.31439 -11.17130 -10.94738 -10.78025 -10.56850 -10.18298 -9.81709 -9.70741 -9.66812 -9.30749 -9.21773 -8.54964 -7.78390 -7.64713 -6.88857 -4.51180 1.57977 2.00216 2.13895 2.71117 3.04275 3.07300 3.10260 3.16289 3.17307 3.77872 3.86773 4.37869 4.53016 4.67179 4.92917 5.08395 5.20557 5.47782 5.51375 5.79729 5.94771 6.10879 6.33623 6.55287 6.59114 6.81314 6.87921 7.00190 7.09974 7.23681 7.32072 7.56864 7.69621 7.84852 8.04885 8.34039 8.39241 8.61714 8.70704 8.72295 10.05975 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.004693 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.116067 B = 5965.329611 C = 6951.830357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.409 5.409 3 N -0.330 5.330 4 C 0.215 3.785 5 N -0.524 5.524 6 C 0.510 3.490 7 N -0.641 5.641 8 C 0.563 3.437 9 O -0.468 6.468 10 C -0.124 4.124 11 C -0.224 4.224 12 C -0.093 4.093 13 C -0.210 4.210 14 C 0.100 3.900 15 C -0.456 4.456 16 H 0.084 0.916 17 C 0.073 3.927 18 N -0.780 5.780 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.269 1.269 23 C -0.086 4.086 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.218 0.782 28 H 0.417 0.583 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.286 0.714 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.056 8.226 1.529 11.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.205 5.205 3 N -0.160 5.160 4 C -0.089 4.089 5 N -0.259 5.259 6 C 0.146 3.854 7 N -0.297 5.297 8 C 0.352 3.648 9 O -0.335 6.335 10 C -0.127 4.127 11 C -0.244 4.244 12 C -0.111 4.111 13 C -0.230 4.230 14 C 0.097 3.903 15 C -0.485 4.485 16 H 0.102 0.898 17 C -0.147 4.147 18 N -0.404 5.404 19 Si 0.735 3.265 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.194 1.194 23 C -0.107 4.107 24 H 0.096 0.904 25 H 0.113 0.887 26 H 0.104 0.896 27 H 0.235 0.765 28 H 0.256 0.744 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.946 8.964 1.375 11.423 hybrid contribution -0.229 -0.618 0.021 0.659 sum -7.176 8.346 1.396 11.095 Atomic orbital electron populations 1.21873 0.74358 1.04686 1.03634 1.50213 1.07379 1.02955 1.59997 1.78015 1.02093 1.05986 1.29891 1.25940 0.95704 0.90318 0.96901 1.71167 1.15982 1.10401 1.28343 1.20645 0.86485 0.83333 0.94966 1.43119 1.12104 0.99904 1.74553 1.19125 0.85103 0.85196 0.75346 1.90856 1.15950 1.83020 1.43704 1.19227 0.94728 0.89211 1.09556 1.20267 0.92846 0.95644 1.15692 1.20423 0.97452 0.92763 1.00459 1.21127 0.93228 0.97213 1.11428 1.17594 0.91696 0.92265 0.88709 1.19660 0.95308 0.98544 1.34958 0.89824 1.25994 1.00172 0.95921 0.92631 1.69774 1.23964 1.25825 1.20858 0.86207 0.80312 0.80599 0.79386 1.18275 1.19828 1.19426 1.21659 0.99236 0.91035 0.98723 0.90401 0.88742 0.89644 0.76524 0.74448 0.89441 0.88669 0.88391 0.90235 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.34 59.84 0.68 1.50 16 2 N -0.41 -5.75 4.05 -68.66 -0.28 -6.03 16 3 N -0.33 -4.98 12.68 29.29 0.37 -4.61 16 4 C 0.22 3.32 13.02 -91.82 -1.20 2.12 16 5 N -0.52 -10.13 9.40 -15.14 -0.14 -10.27 16 6 C 0.51 8.80 8.47 -320.37 -2.71 6.09 16 7 N -0.64 -10.76 5.34 -13.60 -0.07 -10.83 16 8 C 0.56 12.11 7.73 -12.33 -0.10 12.01 16 9 O -0.47 -11.81 15.02 5.33 0.08 -11.73 16 10 C -0.12 -2.76 5.87 -105.04 -0.62 -3.38 16 11 C -0.22 -4.33 9.55 -38.92 -0.37 -4.70 16 12 C -0.09 -1.83 10.01 -39.73 -0.40 -2.23 16 13 C -0.21 -4.71 9.78 -38.81 -0.38 -5.09 16 14 C 0.10 2.53 5.57 -106.87 -0.59 1.93 16 15 C -0.46 -11.53 9.05 -37.73 -0.34 -11.87 16 16 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 17 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 18 N -0.78 -20.13 10.97 55.55 0.61 -19.52 16 19 Si 0.91 18.27 29.59 -169.99 -5.03 13.24 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 C -0.09 -2.21 8.23 -38.44 -0.32 -2.53 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.67 8.14 -51.92 -0.42 0.24 16 26 H 0.08 0.54 7.55 -51.93 -0.39 0.15 16 27 H 0.22 2.40 8.06 -52.49 -0.42 1.98 16 28 H 0.42 5.35 6.02 -40.82 -0.25 5.11 16 29 H 0.09 1.31 6.38 -52.48 -0.33 0.98 16 30 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 31 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 32 H 0.29 6.79 8.30 -40.82 -0.34 6.46 16 33 H 0.14 3.78 5.76 -52.49 -0.30 3.48 16 LS Contribution 294.50 15.07 4.44 4.44 Total: -1.00 -32.19 294.50 -9.39 -41.58 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -2.94 Total: 8.19 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -6.43 Total: -4.45 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.49 Total: -51.27 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.19 -9.39 -41.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177686383.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.141 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds