Wall clock time and date at job start Mon Mar 30 2020 01:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40431 * 126.83518 * 2 1 4 4 C 1.30632 * 106.96829 * 180.10604 * 3 2 1 5 5 N 1.33305 * 109.10636 * 359.62539 * 4 3 2 6 6 C 1.31507 * 109.71780 * 0.24352 * 5 4 3 7 7 N 1.38711 * 126.06810 * 180.02562 * 6 5 4 8 8 C 1.34782 * 119.99264 * 359.97363 * 7 6 5 9 9 O 1.21542 * 120.00032 * 359.97438 * 8 7 6 10 10 C 1.47839 * 119.99249 * 180.02562 * 8 7 6 11 11 C 1.39932 * 120.03217 * 359.72570 * 10 8 7 12 12 C 1.38322 * 120.35679 * 179.71722 * 11 10 8 13 13 C 1.37761 * 120.41497 * 0.55726 * 12 11 10 14 14 C 1.40752 * 120.04026 * 359.72370 * 13 12 11 15 15 C 1.41441 * 120.17210 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00310 * 334.92015 * 15 14 13 17 17 C 1.39940 * 119.99804 * 154.92993 * 15 14 13 18 18 N 1.30828 * 119.99760 * 342.57477 * 17 15 14 19 19 Si 1.86796 * 120.00042 * 162.58121 * 17 15 14 20 20 H 1.48503 * 109.47139 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47139 * 119.99646 * 19 17 15 22 22 H 1.48504 * 109.47250 * 239.99667 * 19 17 15 23 23 C 1.39022 * 120.02192 * 179.97438 * 10 8 7 24 24 H 1.08996 * 109.47385 * 270.31495 * 1 2 3 25 25 H 1.09010 * 109.46757 * 30.31256 * 1 2 3 26 26 H 1.08997 * 109.47142 * 150.31340 * 1 2 3 27 27 H 1.07999 * 125.44875 * 179.89189 * 4 3 2 28 28 H 0.96997 * 120.00535 * 179.97438 * 7 6 5 29 29 H 1.08005 * 119.82585 * 359.97438 * 11 10 8 30 30 H 1.08007 * 119.79592 * 180.26204 * 12 11 10 31 31 H 1.07999 * 119.97954 * 179.74100 * 13 12 11 32 32 H 0.96999 * 119.99334 * 180.02562 * 18 17 15 33 33 H 1.08001 * 120.20724 * 359.97438 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3069 1.1240 0.0000 4 6 3.5354 0.6800 -0.0023 5 7 3.5178 -0.6529 0.0045 6 6 2.2740 -1.0801 0.0060 7 7 1.8659 -2.4058 0.0130 8 6 2.7834 -3.3932 0.0185 9 8 3.9681 -3.1219 0.0169 10 6 2.3484 -4.8061 0.0255 11 6 0.9846 -5.1190 0.0321 12 6 0.5701 -6.4387 0.0327 13 6 1.4945 -7.4600 0.0384 14 6 2.8707 -7.1648 0.0377 15 6 3.8223 -8.2112 0.0430 16 1 3.5587 -9.1789 0.4437 17 6 5.1055 -7.9927 -0.4709 18 7 5.3315 -6.9677 -1.2519 19 14 6.4954 -9.1646 -0.0419 20 1 5.9830 -10.2343 0.8516 21 1 7.0318 -9.7728 -1.2860 22 1 7.5766 -8.4179 0.6501 23 6 3.2942 -5.8250 0.0307 24 1 -0.3634 0.0056 1.0276 25 1 -0.3633 0.8873 -0.5187 26 1 -0.3633 -0.8928 -0.5089 27 1 4.4235 1.2946 -0.0046 28 1 0.9204 -2.6223 0.0139 29 1 0.2515 -4.3259 0.0325 30 1 -0.4849 -6.6699 0.0335 31 1 1.1631 -8.4879 0.0430 32 1 6.2208 -6.8165 -1.6083 33 1 4.3480 -5.5883 0.0292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177686383.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:24 Heat of formation + Delta-G solvation = 72.351402 kcal Electronic energy + Delta-G solvation = -19763.888013 eV Core-core repulsion = 16598.208339 eV Total energy + Delta-G solvation = -3165.679674 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.22972 -40.98572 -38.88527 -36.39973 -35.56013 -34.85261 -32.40763 -31.34812 -31.01123 -28.23156 -27.23806 -25.31825 -23.35013 -22.90886 -22.29017 -21.03435 -19.76265 -19.03669 -17.63183 -17.39855 -17.22629 -16.74292 -16.40868 -15.80839 -15.77613 -15.30099 -15.10035 -14.56441 -14.30681 -14.10843 -14.02773 -13.50823 -12.99991 -12.86473 -12.80354 -12.58394 -12.30828 -12.18685 -11.95707 -11.51963 -11.13374 -11.08587 -10.79976 -10.76823 -9.89128 -9.50679 -9.40012 -8.67245 -6.38653 0.10052 0.65345 0.81568 1.00058 1.38117 1.47006 1.53844 1.80362 2.01166 2.18094 2.21523 2.77020 3.34043 3.50870 3.67758 3.94265 4.32258 4.36980 4.43083 4.53709 4.60097 4.67861 4.89216 5.06987 5.15460 5.20902 5.29736 5.42680 5.48257 5.73249 5.78509 5.88162 6.03354 6.12000 6.29830 6.58262 6.87376 6.92804 6.98302 7.19167 8.29722 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.004693 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.116067 B = 5965.329611 C = 6951.830357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.393 5.393 3 N -0.330 5.330 4 C 0.208 3.792 5 N -0.576 5.576 6 C 0.489 3.511 7 N -0.618 5.618 8 C 0.566 3.434 9 O -0.516 6.516 10 C -0.132 4.132 11 C -0.195 4.195 12 C -0.091 4.091 13 C -0.211 4.211 14 C 0.068 3.932 15 C -0.496 4.496 16 H 0.086 0.914 17 C 0.031 3.969 18 N -0.826 5.826 19 Si 0.980 3.020 20 H -0.250 1.250 21 H -0.265 1.265 22 H -0.272 1.272 23 C -0.126 4.126 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.249 0.751 28 H 0.436 0.564 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.111 0.889 32 H 0.286 0.714 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 9.037 1.858 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.189 5.189 3 N -0.160 5.160 4 C -0.095 4.095 5 N -0.312 5.312 6 C 0.124 3.876 7 N -0.275 5.275 8 C 0.355 3.645 9 O -0.388 6.388 10 C -0.136 4.136 11 C -0.214 4.214 12 C -0.109 4.109 13 C -0.231 4.231 14 C 0.066 3.934 15 C -0.525 4.525 16 H 0.104 0.896 17 C -0.184 4.184 18 N -0.451 5.451 19 Si 0.801 3.199 20 H -0.173 1.173 21 H -0.189 1.189 22 H -0.197 1.197 23 C -0.147 4.147 24 H 0.117 0.883 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.264 0.736 28 H 0.279 0.721 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.129 0.871 32 H 0.097 0.903 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.312 9.803 1.709 14.330 hybrid contribution 0.485 -0.664 -0.060 0.824 sum -9.827 9.139 1.649 13.521 Atomic orbital electron populations 1.22445 0.70872 1.06897 1.05751 1.50506 1.09063 1.01466 1.57913 1.77963 1.02173 1.06525 1.29335 1.26535 0.96956 0.89391 0.96605 1.71050 1.18226 1.12556 1.29318 1.20489 0.86925 0.83726 0.96445 1.42518 1.12219 0.99251 1.73557 1.18998 0.84951 0.85739 0.74762 1.90836 1.18184 1.83755 1.45991 1.19437 0.95857 0.89123 1.09152 1.20881 0.92191 0.97382 1.10966 1.20952 0.99424 0.92019 0.98526 1.21470 0.92545 0.98988 1.10097 1.17914 0.93370 0.92242 0.89863 1.19911 0.96683 0.98980 1.36900 0.89621 1.26822 1.02322 0.97342 0.91957 1.69876 1.24357 1.28106 1.22777 0.85185 0.76930 0.78505 0.79317 1.17302 1.18949 1.19744 1.21444 0.98381 0.92448 1.02410 0.88263 0.87084 0.87048 0.73560 0.72105 0.83851 0.83757 0.87132 0.90296 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 11.34 127.77 1.45 2.45 16 2 N -0.39 -9.98 4.05 -371.13 -1.50 -11.48 16 3 N -0.33 -9.30 12.68 -61.25 -0.78 -10.08 16 4 C 0.21 6.23 13.02 180.77 2.35 8.58 16 5 N -0.58 -22.22 9.40 -201.80 -1.90 -24.12 16 6 C 0.49 16.15 8.47 260.64 2.21 18.35 16 7 N -0.62 -19.46 5.34 -315.23 -1.68 -21.14 16 8 C 0.57 24.38 7.73 86.78 0.67 25.05 16 9 O -0.52 -27.25 15.02 -3.85 -0.06 -27.31 16 10 C -0.13 -5.85 5.87 -20.14 -0.12 -5.97 16 11 C -0.19 -6.74 9.55 22.70 0.22 -6.52 16 12 C -0.09 -3.23 10.01 22.18 0.22 -3.00 16 13 C -0.21 -9.19 9.78 22.77 0.22 -8.97 16 14 C 0.07 3.56 5.57 -21.32 -0.12 3.44 16 15 C -0.50 -26.21 9.05 23.47 0.21 -26.00 16 16 H 0.09 4.27 7.90 -2.91 -0.02 4.24 16 17 C 0.03 1.57 5.14 85.25 0.44 2.01 16 18 N -0.83 -45.56 10.97 21.83 0.24 -45.32 16 19 Si 0.98 39.17 29.59 68.60 2.03 41.20 16 20 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 C -0.13 -6.74 8.23 23.01 0.19 -6.55 16 24 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.11 0.83 7.55 -2.39 -0.02 0.81 16 27 H 0.25 5.21 8.06 -2.91 -0.02 5.19 16 28 H 0.44 9.33 6.02 -92.71 -0.56 8.77 16 29 H 0.14 3.32 6.38 -2.91 -0.02 3.30 16 30 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 32 H 0.29 14.63 8.30 -92.71 -0.77 13.87 16 33 H 0.10 5.95 5.76 -2.91 -0.02 5.94 16 Total: -1.00 -76.35 294.50 4.90 -71.44 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.61 Total: 23.92 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 7.95 Total: 2.88 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -5.62 Total: -112.13 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.06 Total: -27.31 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -76.35 4.90 -71.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177686383.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.793 kcal (2) G-P(sol) polarization free energy of solvation -76.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds