Wall clock time and date at job start Mon Mar 30 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47021 * 147.85122 * 3 2 1 5 5 N 1.46500 * 109.46865 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99887 * 262.50287 * 5 4 3 7 7 C 1.50706 * 109.47480 * 270.00188 * 6 5 4 8 8 H 1.07997 * 119.99432 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00029 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00202 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99748 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46965 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47158 * 120.00201 * 11 9 7 14 14 H 1.48496 * 109.47154 * 240.00179 * 11 9 7 15 15 C 1.34777 * 120.00052 * 82.50698 * 5 4 3 16 16 O 1.21680 * 119.99755 * 182.44344 * 15 5 4 17 17 C 1.46789 * 120.00095 * 2.44444 * 15 5 4 18 18 C 1.36405 * 125.85212 * 169.20760 * 17 15 5 19 19 C 1.41273 * 107.03622 * 180.13155 * 18 17 15 20 20 C 1.43204 * 126.45359 * 179.83372 * 19 18 17 21 21 N 7.86428 * 113.03662 * 66.42567 * 2 1 3 22 22 C 1.38181 * 107.08992 * 359.56834 * 19 18 17 23 23 N 1.34430 * 108.38252 * 0.26823 * 22 19 18 24 24 H 0.97005 * 125.40053 * 180.02562 * 23 22 19 25 25 H 1.09004 * 109.46741 * 27.84984 * 3 2 1 26 26 H 1.08996 * 109.46827 * 267.85753 * 3 2 1 27 27 H 1.09001 * 109.46849 * 59.99933 * 4 3 2 28 28 H 1.08997 * 109.47126 * 300.00240 * 4 3 2 29 29 H 1.08999 * 109.47309 * 30.00164 * 6 5 4 30 30 H 1.09002 * 109.47270 * 150.00435 * 6 5 4 31 31 H 0.97001 * 119.99526 * 179.97438 * 10 9 7 32 32 H 1.08004 * 126.48376 * 359.96080 * 18 17 15 33 33 H 1.07998 * 125.80816 * 180.28595 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2222 -0.7676 5 7 4.5824 1.2225 -0.7681 6 6 5.3151 2.0320 0.2087 7 6 5.5658 3.4038 -0.3626 8 1 5.2141 3.6483 -1.3541 9 6 6.2431 4.3469 0.3807 10 7 6.6709 4.0493 1.5882 11 14 6.5532 6.0476 -0.3273 12 1 5.9758 6.1279 -1.6931 13 1 5.9152 7.0693 0.5413 14 1 8.0155 6.2972 -0.3932 15 6 5.2561 0.4781 -1.6672 16 8 6.4721 0.4435 -1.6393 17 6 4.5230 -0.2908 -2.6801 18 6 5.0717 -0.9114 -3.7639 19 6 4.0129 -1.5260 -4.4689 20 6 4.1238 -2.2879 -5.6764 21 7 4.2134 -2.8944 -6.6331 22 6 2.8509 -1.2586 -3.7706 23 7 3.1640 -0.5150 -2.6954 24 1 2.5331 -0.1886 -2.0348 25 1 2.9717 -0.9079 -0.4801 26 1 2.9712 0.0392 1.0269 27 1 2.7536 2.1306 -0.2874 28 1 2.7541 1.1835 -1.7945 29 1 4.7263 2.1208 1.1217 30 1 6.2677 1.5534 0.4358 31 1 7.1477 4.7128 2.1110 32 1 6.1174 -0.9273 -4.0337 33 1 1.8598 -1.5907 -4.0423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177754489.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:54 Heat of formation + Delta-G solvation = 74.365304 kcal Electronic energy + Delta-G solvation = -19797.999853 eV Core-core repulsion = 16632.407509 eV Total energy + Delta-G solvation = -3165.592344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.86766 -40.16126 -38.34054 -37.38665 -36.86226 -34.95116 -32.98205 -31.91747 -30.96824 -28.96854 -25.59660 -25.46351 -23.81824 -22.53360 -21.25258 -19.24088 -18.72088 -18.43612 -18.04507 -16.98758 -16.78180 -16.26649 -16.02638 -15.77780 -15.29272 -14.90217 -14.70332 -14.45405 -14.31162 -14.28094 -13.97490 -13.81585 -13.68024 -13.56230 -13.23011 -13.04741 -12.90598 -12.75158 -12.54910 -12.21083 -12.08998 -11.65527 -10.94184 -10.56968 -10.13737 -9.66883 -9.30055 -8.16815 -6.28517 0.49025 0.79606 1.42028 1.46009 1.54060 1.57148 1.67180 1.73737 1.99475 2.10631 2.35384 2.45952 2.70875 2.90024 3.15860 3.21252 3.58047 3.73180 3.81738 4.12162 4.18346 4.24854 4.59697 4.64109 4.86473 4.93901 5.09032 5.34381 5.41609 5.52550 5.64523 5.84914 6.12435 6.19878 6.45046 6.61301 6.67756 6.80900 7.26495 7.44139 8.90130 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.005447 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.586929 B = 5139.049681 C = 6337.962274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.231 3.769 3 C -0.060 4.060 4 C 0.091 3.909 5 N -0.593 5.593 6 C 0.258 3.742 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.015 3.985 10 N -0.923 5.923 11 Si 0.955 3.045 12 H -0.268 1.268 13 H -0.274 1.274 14 H -0.287 1.287 15 C 0.576 3.424 16 O -0.570 6.570 17 C -0.052 4.052 18 C -0.062 4.062 19 C -0.152 4.152 20 C 0.318 3.682 21 N -0.486 5.486 22 C 0.129 3.871 23 N -0.524 5.524 24 H 0.436 0.564 25 H 0.130 0.870 26 H 0.143 0.857 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.012 0.988 31 H 0.265 0.735 32 H 0.149 0.851 33 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 -8.671 -4.681 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.087 4.087 3 C -0.101 4.101 4 C -0.034 4.034 5 N -0.322 5.322 6 C 0.138 3.862 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.185 4.185 10 N -0.563 5.563 11 Si 0.781 3.219 12 H -0.192 1.192 13 H -0.200 1.200 14 H -0.213 1.213 15 C 0.366 3.634 16 O -0.449 6.449 17 C -0.163 4.163 18 C -0.089 4.089 19 C -0.162 4.162 20 C 0.004 3.996 21 N -0.163 5.163 22 C -0.016 4.016 23 N -0.130 5.130 24 H 0.288 0.712 25 H 0.148 0.852 26 H 0.161 0.839 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -12.366 -9.410 -5.759 16.573 hybrid contribution 0.942 1.465 0.601 1.842 sum -11.425 -7.946 -5.159 14.841 Atomic orbital electron populations 1.81333 1.13716 1.09240 1.09312 1.28831 0.94541 0.92509 0.92776 1.20117 0.81076 1.01090 1.07816 1.21942 0.80045 0.99793 1.01619 1.47971 1.06316 1.44454 1.33490 1.18952 0.91893 0.88375 0.87014 1.21772 1.36532 0.97948 1.01757 0.92632 1.25659 0.95196 1.02437 0.95170 1.70017 1.39006 1.36143 1.11169 0.85545 0.77655 0.79954 0.78720 1.19237 1.19977 1.21289 1.17479 0.86513 0.78908 0.80533 1.90828 1.14944 1.66137 1.73016 1.19715 0.83643 1.11028 1.01873 1.21072 0.99462 0.95868 0.92541 1.15332 0.94952 1.10826 0.95082 1.24777 0.92207 0.91214 0.91406 1.81297 1.08854 1.13103 1.13085 1.23032 1.00029 0.92604 0.85936 1.43325 1.07137 1.39881 1.22647 0.71209 0.85215 0.83937 0.87170 0.88436 0.93874 0.97034 0.92554 0.83309 0.74937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.46 18.54 20.01 0.37 -9.09 16 2 C 0.23 3.46 14.89 89.44 1.33 4.79 16 3 C -0.06 -0.78 5.00 28.79 0.14 -0.63 16 4 C 0.09 1.83 4.90 86.38 0.42 2.25 16 5 N -0.59 -19.32 2.48 -830.75 -2.06 -21.38 16 6 C 0.26 11.53 5.15 85.63 0.44 11.97 16 7 C -0.54 -27.55 9.39 25.60 0.24 -27.31 16 8 H 0.06 2.82 7.81 -2.91 -0.02 2.79 16 9 C 0.01 0.79 5.46 84.65 0.46 1.25 16 10 N -0.92 -51.21 13.29 21.44 0.28 -50.93 16 11 Si 0.96 41.90 29.54 68.60 2.03 43.92 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 14 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 15 C 0.58 19.88 7.58 86.48 0.66 20.54 16 16 O -0.57 -25.87 16.44 -4.28 -0.07 -25.94 16 17 C -0.05 -1.25 6.42 40.02 0.26 -0.99 16 18 C -0.06 -1.45 10.55 22.59 0.24 -1.21 16 19 C -0.15 -2.73 5.97 -21.30 -0.13 -2.86 16 20 C 0.32 6.98 15.83 88.33 1.40 8.38 16 21 N -0.49 -13.14 18.54 19.01 0.35 -12.79 16 22 C 0.13 1.38 11.90 84.28 1.00 2.39 16 23 N -0.52 -7.36 4.11 -183.26 -0.75 -8.12 16 24 H 0.44 4.71 2.99 -92.70 -0.28 4.43 16 25 H 0.13 1.27 6.46 -2.38 -0.02 1.25 16 26 H 0.14 1.76 8.14 -2.39 -0.02 1.75 16 27 H 0.11 2.32 8.02 -2.39 -0.02 2.30 16 28 H 0.10 1.53 5.11 -2.39 -0.01 1.52 16 29 H 0.04 1.87 8.07 -2.39 -0.02 1.85 16 30 H 0.01 0.61 7.39 -2.39 -0.02 0.59 16 31 H 0.27 13.98 8.31 -92.71 -0.77 13.20 16 32 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.23 0.26 8.06 -2.91 -0.02 0.24 16 Total: -1.00 -73.19 305.70 7.52 -65.67 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: 0.90 Total: 0.08 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 6.47 Total: 18.57 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -1.80 Total: -102.30 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.07 Total: -25.94 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -73.19 7.52 -65.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177754489.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.032 kcal (2) G-P(sol) polarization free energy of solvation -73.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds