Wall clock time and date at job start Mon Mar 30 2020 00:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47118 * 183.88755 * 3 2 1 5 5 N 1.46503 * 109.47193 * 175.34076 * 4 3 2 6 6 C 1.46494 * 120.00350 * 275.87141 * 5 4 3 7 7 C 1.50698 * 109.47187 * 270.00245 * 6 5 4 8 8 H 1.08000 * 120.00411 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00343 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99583 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00434 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47154 * 59.99292 * 11 9 7 13 13 H 1.48495 * 109.47286 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.46661 * 299.99462 * 11 9 7 15 15 C 1.34780 * 119.99473 * 95.87398 * 5 4 3 16 16 O 1.21617 * 119.99594 * 185.34163 * 15 5 4 17 17 C 1.47370 * 120.00230 * 5.33553 * 15 5 4 18 18 C 1.38129 * 126.46918 * 145.69754 * 17 15 5 19 19 N 1.34433 * 108.38974 * 180.02562 * 18 17 15 20 20 H 0.96998 * 125.38694 * 179.97438 * 19 18 17 21 21 C 1.37706 * 109.21835 * 359.76280 * 19 18 17 22 22 C 1.43196 * 125.83979 * 180.23589 * 21 19 18 23 23 N 5.59664 * 90.76967 * 105.90685 * 2 1 3 24 24 C 1.36354 * 108.31169 * 0.38202 * 21 19 18 25 25 H 1.08999 * 109.47130 * 63.89315 * 3 2 1 26 26 H 1.08998 * 109.47645 * 303.88968 * 3 2 1 27 27 H 1.09003 * 109.46976 * 55.34659 * 4 3 2 28 28 H 1.08999 * 109.47623 * 295.34616 * 4 3 2 29 29 H 1.09005 * 109.46908 * 29.99828 * 6 5 4 30 30 H 1.08992 * 109.47424 * 150.00022 * 6 5 4 31 31 H 0.97001 * 119.99701 * 180.02562 * 10 9 7 32 32 H 1.08005 * 125.80153 * 0.03046 * 18 17 15 33 33 H 1.08010 * 126.49040 * 179.89439 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4401 0.0978 5 7 4.5781 1.4347 0.2098 6 6 5.2118 1.2511 1.5178 7 6 5.4187 2.5944 2.1687 8 1 5.1095 3.4949 1.6590 9 6 6.0037 2.6739 3.4147 10 7 6.3807 1.5774 4.0353 11 14 6.2596 4.3389 4.2219 12 1 4.9469 5.0105 4.3983 13 1 6.9021 4.1528 5.5477 14 1 7.1328 5.1771 3.3615 15 6 5.3389 1.5987 -0.8906 16 8 6.5484 1.4975 -0.8141 17 6 4.7051 1.9005 -2.1863 18 6 5.2215 2.7016 -3.1861 19 7 4.3451 2.7261 -4.2051 20 1 4.4617 3.2151 -5.0347 21 6 3.2579 1.9431 -3.8869 22 6 2.1161 1.7150 -4.7205 23 7 1.2112 1.5338 -5.3818 24 6 3.4532 1.4249 -2.6409 25 1 2.9715 -0.4514 -0.9228 26 1 2.9717 -0.5722 0.8530 27 1 2.6873 1.9187 0.9777 28 1 2.8235 1.9911 -0.7956 29 1 4.5702 0.6363 2.1493 30 1 6.1750 0.7576 1.3888 31 1 6.7920 1.6333 4.9121 32 1 6.1684 3.2202 -3.1544 33 1 2.7812 0.7712 -2.1045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180879997.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:53 Heat of formation + Delta-G solvation = 79.446465 kcal Electronic energy + Delta-G solvation = -19765.483498 eV Core-core repulsion = 16600.111489 eV Total energy + Delta-G solvation = -3165.372009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.66301 -38.81215 -36.86625 -36.64933 -35.22606 -33.00560 -31.57379 -30.83117 -29.84920 -27.33888 -24.10922 -23.71929 -22.71795 -21.26350 -20.30317 -18.07557 -17.45144 -16.44717 -16.35090 -15.88464 -15.48160 -15.14260 -14.92503 -14.25814 -14.11858 -14.03152 -13.48233 -13.29383 -13.16265 -12.95154 -12.89437 -12.40685 -12.34888 -12.05738 -11.97865 -11.67388 -11.24864 -10.97138 -10.88848 -10.60551 -10.18443 -9.72635 -9.28900 -9.04952 -8.48358 -8.45092 -7.79763 -6.07449 -4.12103 1.18573 2.02519 2.07565 2.79398 2.85736 2.94601 3.20161 3.31159 3.36090 3.37594 3.60923 3.75474 3.85930 4.32096 4.43123 4.91967 4.99335 5.04909 5.09742 5.21870 5.27633 5.46626 5.52313 5.77737 5.89640 6.17885 6.32775 6.46632 6.96978 7.00561 7.21626 7.39367 7.46124 7.62129 7.88969 8.18882 8.30094 8.85262 9.01524 9.53400 11.00562 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.005422 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.354981 B = 5163.294789 C = 6115.492653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.215 3.785 3 C -0.058 4.058 4 C 0.106 3.894 5 N -0.588 5.588 6 C 0.244 3.756 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.581 3.419 16 O -0.535 6.535 17 C -0.210 4.210 18 C 0.102 3.898 19 N -0.524 5.524 20 H 0.424 0.576 21 C 0.040 3.960 22 C 0.281 3.719 23 N -0.411 5.411 24 C -0.091 4.091 25 H 0.110 0.890 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.264 0.736 32 H 0.191 0.809 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 0.747 -13.533 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.103 4.103 3 C -0.099 4.099 4 C -0.020 4.020 5 N -0.318 5.318 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.368 3.632 16 O -0.413 6.413 17 C -0.219 4.219 18 C -0.039 4.039 19 N -0.119 5.119 20 H 0.263 0.737 21 C -0.072 4.072 22 C -0.034 4.034 23 N -0.088 5.088 24 C -0.119 4.119 25 H 0.128 0.872 26 H 0.139 0.861 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.208 0.792 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.429 0.410 -14.451 15.442 hybrid contribution 0.930 1.216 0.470 1.601 sum -4.498 1.626 -13.981 14.777 Atomic orbital electron populations 1.81215 1.13020 1.08580 1.09175 1.29097 0.95100 0.93178 0.92968 1.20020 0.81400 1.02023 1.06447 1.21606 0.82647 0.93046 1.04736 1.48001 1.04470 1.70080 1.09282 1.19369 0.94420 0.97332 0.76322 1.21394 1.40472 0.92931 1.02041 0.92317 1.24906 0.95228 0.96703 0.97073 1.69911 1.41114 1.27188 1.14994 0.86590 0.78411 0.84124 0.78475 1.20284 1.21263 1.20189 1.17254 0.86282 0.77429 0.82265 1.90784 1.13742 1.51152 1.85626 1.19902 0.97025 1.07337 0.97652 1.22381 0.95219 1.00227 0.86117 1.41564 1.15034 1.38060 1.17224 0.73750 1.15173 0.88663 1.07907 0.95449 1.24347 0.92339 0.93874 0.92886 1.81296 1.10456 1.08984 1.08069 1.21616 0.96738 1.01059 0.92479 0.87221 0.86062 0.89090 0.89156 0.94648 0.93234 0.92626 0.79200 0.82258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.67 18.54 42.15 0.78 -5.89 16 2 C 0.21 2.65 15.40 -20.76 -0.32 2.33 16 3 C -0.06 -0.61 5.14 -29.52 -0.15 -0.76 16 4 C 0.11 1.40 4.87 -4.04 -0.02 1.38 16 5 N -0.59 -10.37 2.46 -176.35 -0.43 -10.80 16 6 C 0.24 5.58 5.22 -5.20 -0.03 5.55 16 7 C -0.53 -13.66 9.39 -34.44 -0.32 -13.99 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 11 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 15 C 0.58 10.21 7.59 -12.54 -0.10 10.12 16 16 O -0.54 -11.73 16.60 5.26 0.09 -11.64 16 17 C -0.21 -2.64 5.51 -105.01 -0.58 -3.22 16 18 C 0.10 0.96 11.86 -16.45 -0.20 0.76 16 19 N -0.52 -3.76 6.02 -10.29 -0.06 -3.82 16 20 H 0.42 1.59 8.96 -40.82 -0.37 1.23 16 21 C 0.04 0.37 6.90 -83.98 -0.58 -0.21 16 22 C 0.28 2.99 15.88 -22.49 -0.36 2.63 16 23 N -0.41 -5.26 18.53 41.81 0.77 -4.49 16 24 C -0.09 -0.94 8.18 -39.05 -0.32 -1.26 16 25 H 0.11 0.93 6.49 -51.93 -0.34 0.60 16 26 H 0.12 1.28 8.09 -51.93 -0.42 0.86 16 27 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 28 H 0.09 1.04 4.69 -51.93 -0.24 0.80 16 29 H 0.04 0.80 8.02 -51.93 -0.42 0.39 16 30 H 0.05 1.29 7.35 -51.93 -0.38 0.91 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.19 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.16 1.49 4.10 -52.48 -0.22 1.27 16 LS Contribution 307.70 15.07 4.64 4.64 Total: -1.00 -33.58 307.70 -4.33 -37.91 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -2.77 Total: -2.27 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -3.06 Total: 4.92 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 1.80 Total: -49.20 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.58 -4.33 -37.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180879997.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.360 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds