Wall clock time and date at job start Mon Mar 30 2020 01:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34575 * 126.73977 * 2 1 4 4 N 1.30644 * 108.30071 * 179.75484 * 3 2 1 5 5 C 1.34021 * 109.79129 * 0.44227 * 4 3 2 6 6 C 1.48270 * 125.65721 * 179.82142 * 5 4 3 7 7 C 1.39520 * 119.96982 * 359.68994 * 6 5 4 8 8 C 1.37635 * 120.03098 * 180.02562 * 7 6 5 9 9 C 1.39786 * 119.96798 * 0.02562 * 8 7 6 10 10 C 1.47581 * 120.02772 * 179.97438 * 9 8 7 11 11 O 1.21610 * 120.00346 * 359.73418 * 10 9 8 12 12 N 1.34784 * 119.99818 * 180.02562 * 10 9 8 13 13 C 1.36842 * 120.00080 * 179.72756 * 12 10 9 14 14 H 1.08005 * 120.00015 * 0.02562 * 13 12 10 15 15 C 1.39055 * 120.00162 * 179.97438 * 13 12 10 16 16 N 1.31364 * 119.99653 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00351 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47225 * 60.00054 * 17 15 13 19 19 H 1.48496 * 109.47337 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47356 * 300.00445 * 17 15 13 21 21 C 1.39787 * 119.93736 * 0.26259 * 9 8 7 22 22 C 1.37631 * 119.97082 * 359.45933 * 21 9 8 23 23 N 1.31563 * 108.68249 * 359.55349 * 5 4 3 24 24 H 1.09000 * 109.47214 * 269.99935 * 1 2 3 25 25 H 1.09009 * 109.46907 * 29.99577 * 1 2 3 26 26 H 1.09001 * 109.47483 * 149.99296 * 1 2 3 27 27 H 1.07996 * 125.85244 * 0.02562 * 3 2 1 28 28 H 1.08003 * 119.98619 * 0.02900 * 7 6 5 29 29 H 1.08002 * 120.01046 * 180.02562 * 8 7 6 30 30 H 0.97005 * 119.99846 * 359.72808 * 12 10 9 31 31 H 0.97000 * 119.99559 * 180.02562 * 16 15 13 32 32 H 1.08004 * 120.01252 * 179.74099 * 21 9 8 33 33 H 1.07992 * 119.99026 * 180.27950 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.0784 0.0000 4 7 3.5093 0.6652 0.0053 5 6 3.5410 -0.6746 -0.0009 6 6 4.7658 -1.5102 -0.0014 7 6 6.0227 -0.9046 -0.0017 8 6 7.1605 -1.6791 -0.0027 9 6 7.0563 -3.0730 -0.0041 10 6 8.2754 -3.9047 -0.0058 11 8 9.3713 -3.3775 -0.0109 12 7 8.1743 -5.2488 -0.0076 13 6 9.3046 -6.0200 -0.0148 14 1 10.2779 -5.5517 -0.0186 15 6 9.2003 -7.4066 -0.0161 16 7 8.0166 -7.9762 -0.0110 17 14 10.7433 -8.4594 -0.0267 18 1 11.5538 -8.1619 1.1815 19 1 10.3631 -9.8949 -0.0271 20 1 11.5397 -8.1584 -1.2434 21 6 5.7963 -3.6784 -0.0099 22 6 4.6602 -2.9016 -0.0031 23 7 2.3050 -1.1254 -0.0006 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.9469 2.1089 0.0004 28 1 6.1029 0.1724 -0.0010 29 1 8.1333 -1.2099 -0.0025 30 1 7.3002 -5.6694 -0.0038 31 1 7.9438 -8.9435 -0.0116 32 1 5.7144 -4.7553 -0.0152 33 1 3.6867 -3.3689 -0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184209707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:59 Heat of formation + Delta-G solvation = 80.159639 kcal Electronic energy + Delta-G solvation = -19040.866241 eV Core-core repulsion = 15875.525158 eV Total energy + Delta-G solvation = -3165.341083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.10883 -39.16896 -37.35624 -34.36154 -34.08340 -31.94923 -31.55941 -30.47000 -30.18714 -27.35947 -25.34895 -23.52772 -22.73970 -21.34387 -20.83028 -19.38870 -18.22353 -17.43595 -16.55434 -16.13561 -15.51596 -15.25392 -14.72756 -14.35585 -13.96919 -13.75902 -13.63784 -13.51573 -13.47972 -13.07314 -12.67613 -12.11058 -11.96091 -11.70434 -11.47470 -11.13633 -10.76269 -10.48717 -10.29043 -10.09474 -10.05860 -9.97613 -9.60524 -8.61098 -8.49327 -8.18644 -8.06245 -6.57978 -3.89064 0.87465 1.68217 1.81057 2.11587 2.88478 3.19073 3.20797 3.25325 3.85937 3.93033 4.08229 4.19530 4.53964 4.56309 4.74294 4.89827 4.95021 5.02594 5.28709 5.34254 5.34955 5.75150 5.84793 5.97312 6.08634 6.17482 6.28388 6.42433 6.57896 6.78683 6.80860 6.95942 7.25610 7.41190 7.94792 7.95826 8.49441 9.04631 9.40807 9.97616 10.58624 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042119 B = 0.003335 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.622500 B = 8393.720133 C = 9043.187392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.390 5.390 3 C 0.253 3.747 4 N -0.535 5.535 5 C 0.277 3.723 6 C -0.031 4.031 7 C -0.080 4.080 8 C -0.085 4.085 9 C -0.073 4.073 10 C 0.460 3.540 11 O -0.597 6.597 12 N -0.540 5.540 13 C -0.293 4.293 14 H 0.109 0.891 15 C 0.023 3.977 16 N -0.887 5.887 17 Si 0.937 3.063 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.271 1.271 21 C -0.111 4.111 22 C -0.084 4.084 23 N -0.311 5.311 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.219 0.781 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.394 0.606 31 H 0.277 0.723 32 H 0.132 0.868 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.701 13.678 -0.046 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.181 5.181 3 C -0.044 4.044 4 N -0.261 5.261 5 C -0.001 4.001 6 C -0.035 4.035 7 C -0.100 4.100 8 C -0.105 4.105 9 C -0.078 4.078 10 C 0.249 3.751 11 O -0.484 6.484 12 N -0.173 5.173 13 C -0.423 4.423 14 H 0.126 0.874 15 C -0.180 4.180 16 N -0.526 5.526 17 Si 0.763 3.237 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.196 1.196 21 C -0.131 4.131 22 C -0.104 4.104 23 N -0.139 5.139 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.236 0.764 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.230 0.770 31 H 0.087 0.913 32 H 0.150 0.850 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.079 13.244 -0.044 20.832 hybrid contribution -0.350 -0.569 0.012 0.668 sum -16.429 12.675 -0.033 20.750 Atomic orbital electron populations 1.21926 0.73779 1.04900 1.03788 1.50401 1.08061 1.04439 1.55242 1.26013 0.85794 0.95444 0.97164 1.70513 1.20254 1.10891 1.24451 1.22392 0.91638 0.88680 0.97421 1.17466 0.88292 0.91309 1.06393 1.21048 0.90489 1.00303 0.98184 1.21150 0.98794 0.92411 0.98131 1.20526 0.93919 0.94590 0.98768 1.17712 0.88170 0.82639 0.86589 1.90602 1.27626 1.72532 1.57668 1.41930 1.09905 1.04462 1.61030 1.19830 0.88130 0.87842 1.46486 0.87357 1.25413 0.98636 0.97253 0.96737 1.69584 1.23104 1.12022 1.47939 0.85815 0.80571 0.77979 0.79356 1.19590 1.20763 1.19594 1.21320 0.91409 1.00281 1.00080 1.20985 0.98894 0.91898 0.98666 1.78313 1.01193 1.07126 1.27251 0.90270 0.88969 0.89001 0.76442 0.84875 0.84468 0.77044 0.91298 0.85003 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 11.52 59.85 0.69 1.15 16 2 N -0.39 -3.95 4.04 -69.45 -0.28 -4.23 16 3 C 0.25 2.42 12.64 -90.68 -1.15 1.27 16 4 N -0.53 -7.45 10.81 -12.40 -0.13 -7.58 16 5 C 0.28 4.33 7.77 -156.59 -1.22 3.12 16 6 C -0.03 -0.51 5.88 -104.81 -0.62 -1.13 16 7 C -0.08 -1.32 9.67 -39.32 -0.38 -1.70 16 8 C -0.09 -1.59 9.58 -39.22 -0.38 -1.96 16 9 C -0.07 -1.52 5.88 -104.93 -0.62 -2.14 16 10 C 0.46 11.63 7.71 -12.45 -0.10 11.53 16 11 O -0.60 -16.92 15.91 5.27 0.08 -16.84 16 12 N -0.54 -14.03 5.23 -11.91 -0.06 -14.09 16 13 C -0.29 -8.15 9.68 -15.01 -0.15 -8.29 16 14 H 0.11 3.12 7.15 -52.48 -0.38 2.75 16 15 C 0.02 0.61 5.50 -17.45 -0.10 0.52 16 16 N -0.89 -23.59 13.05 55.50 0.72 -22.87 16 17 Si 0.94 20.58 29.55 -169.99 -5.02 15.55 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 C -0.11 -2.03 9.53 -39.22 -0.37 -2.41 16 22 C -0.08 -1.39 9.66 -39.32 -0.38 -1.77 16 23 N -0.31 -4.51 12.32 32.09 0.40 -4.12 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.13 8.14 -51.92 -0.42 -0.29 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.22 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.13 1.97 7.82 -52.48 -0.41 1.56 16 29 H 0.14 2.54 7.64 -52.49 -0.40 2.14 16 30 H 0.39 9.69 5.91 -40.82 -0.24 9.45 16 31 H 0.28 6.92 8.31 -40.82 -0.34 6.59 16 32 H 0.13 2.33 6.39 -52.48 -0.34 2.00 16 33 H 0.13 1.92 7.82 -52.49 -0.41 1.51 16 LS Contribution 300.75 15.07 4.53 4.53 Total: -1.00 -34.58 300.75 -7.52 -42.10 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.00 Total: 9.36 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -4.75 Total: -1.82 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.64 Total: -52.89 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.08 Total: -16.84 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.58 -7.52 -42.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184209707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.258 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds