Wall clock time and date at job start Mon Mar 30 2020 01:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34575 * 126.73977 * 2 1 4 4 N 1.30644 * 108.30071 * 179.75484 * 3 2 1 5 5 C 1.34021 * 109.79129 * 0.44227 * 4 3 2 6 6 C 1.48270 * 125.65721 * 179.82142 * 5 4 3 7 7 C 1.39520 * 119.96982 * 359.68994 * 6 5 4 8 8 C 1.37635 * 120.03098 * 180.02562 * 7 6 5 9 9 C 1.39786 * 119.96798 * 0.02562 * 8 7 6 10 10 C 1.47581 * 120.02772 * 179.97438 * 9 8 7 11 11 O 1.21610 * 120.00346 * 359.73418 * 10 9 8 12 12 N 1.34784 * 119.99818 * 180.02562 * 10 9 8 13 13 C 1.36842 * 120.00080 * 179.72756 * 12 10 9 14 14 H 1.08005 * 120.00015 * 0.02562 * 13 12 10 15 15 C 1.39055 * 120.00162 * 179.97438 * 13 12 10 16 16 N 1.31364 * 119.99653 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00351 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47225 * 60.00054 * 17 15 13 19 19 H 1.48496 * 109.47337 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47356 * 300.00445 * 17 15 13 21 21 C 1.39787 * 119.93736 * 0.26259 * 9 8 7 22 22 C 1.37631 * 119.97082 * 359.45933 * 21 9 8 23 23 N 1.31563 * 108.68249 * 359.55349 * 5 4 3 24 24 H 1.09000 * 109.47214 * 269.99935 * 1 2 3 25 25 H 1.09009 * 109.46907 * 29.99577 * 1 2 3 26 26 H 1.09001 * 109.47483 * 149.99296 * 1 2 3 27 27 H 1.07996 * 125.85244 * 0.02562 * 3 2 1 28 28 H 1.08003 * 119.98619 * 0.02900 * 7 6 5 29 29 H 1.08002 * 120.01046 * 180.02562 * 8 7 6 30 30 H 0.97005 * 119.99846 * 359.72808 * 12 10 9 31 31 H 0.97000 * 119.99559 * 180.02562 * 16 15 13 32 32 H 1.08004 * 120.01252 * 179.74099 * 21 9 8 33 33 H 1.07992 * 119.99026 * 180.27950 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.0784 0.0000 4 7 3.5093 0.6652 0.0053 5 6 3.5410 -0.6746 -0.0009 6 6 4.7658 -1.5102 -0.0014 7 6 6.0227 -0.9046 -0.0017 8 6 7.1605 -1.6791 -0.0027 9 6 7.0563 -3.0730 -0.0041 10 6 8.2754 -3.9047 -0.0058 11 8 9.3713 -3.3775 -0.0109 12 7 8.1743 -5.2488 -0.0076 13 6 9.3046 -6.0200 -0.0148 14 1 10.2779 -5.5517 -0.0186 15 6 9.2003 -7.4066 -0.0161 16 7 8.0166 -7.9762 -0.0110 17 14 10.7433 -8.4594 -0.0267 18 1 11.5538 -8.1619 1.1815 19 1 10.3631 -9.8949 -0.0271 20 1 11.5397 -8.1584 -1.2434 21 6 5.7963 -3.6784 -0.0099 22 6 4.6602 -2.9016 -0.0031 23 7 2.3050 -1.1254 -0.0006 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.9469 2.1089 0.0004 28 1 6.1029 0.1724 -0.0010 29 1 8.1333 -1.2099 -0.0025 30 1 7.3002 -5.6694 -0.0038 31 1 7.9438 -8.9435 -0.0116 32 1 5.7144 -4.7553 -0.0152 33 1 3.6867 -3.3689 -0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184209707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:59 Heat of formation + Delta-G solvation = 57.684088 kcal Electronic energy + Delta-G solvation = -19041.840854 eV Core-core repulsion = 15875.525158 eV Total energy + Delta-G solvation = -3166.315696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.01421 -40.85369 -39.08712 -36.14378 -35.18178 -33.58757 -32.95497 -31.97578 -31.41304 -28.24224 -27.08964 -24.99582 -23.87954 -22.40006 -22.16472 -21.02597 -20.20166 -18.56254 -18.05965 -16.99009 -16.93046 -16.54955 -16.25958 -15.81790 -15.57037 -15.55757 -15.04343 -14.61055 -14.32678 -14.31010 -14.00702 -13.56709 -13.44866 -13.01143 -12.94401 -12.71082 -12.52024 -12.13780 -12.05291 -11.60950 -11.08701 -11.08291 -10.85151 -10.54679 -10.14519 -10.01665 -9.49164 -8.57253 -6.01461 -0.48006 0.39582 0.74163 1.40608 1.41480 1.43897 1.53297 1.73298 2.26086 2.26862 2.88598 2.97071 3.07899 3.28774 3.46051 3.90191 3.96145 3.98374 4.18700 4.36461 4.37853 4.46860 4.64200 4.72089 4.74330 4.98720 5.04141 5.23553 5.32520 5.36916 5.44650 5.45242 5.81096 5.92155 5.95916 6.47920 7.00174 7.03234 7.40486 7.97509 8.59671 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042119 B = 0.003335 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.622500 B = 8393.720133 C = 9043.187392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.384 5.384 3 C 0.267 3.733 4 N -0.568 5.568 5 C 0.250 3.750 6 C -0.016 4.016 7 C -0.073 4.073 8 C -0.082 4.082 9 C -0.105 4.105 10 C 0.460 3.540 11 O -0.636 6.636 12 N -0.548 5.548 13 C -0.338 4.338 14 H 0.086 0.914 15 C -0.009 4.009 16 N -0.909 5.909 17 Si 1.001 2.999 18 H -0.269 1.269 19 H -0.266 1.266 20 H -0.269 1.269 21 C -0.102 4.102 22 C -0.082 4.082 23 N -0.335 5.335 24 H 0.094 0.906 25 H 0.133 0.867 26 H 0.088 0.912 27 H 0.274 0.726 28 H 0.154 0.846 29 H 0.133 0.867 30 H 0.399 0.601 31 H 0.284 0.716 32 H 0.133 0.867 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.440 15.239 -0.067 24.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.175 5.175 3 C -0.029 4.029 4 N -0.295 5.295 5 C -0.029 4.029 6 C -0.019 4.019 7 C -0.093 4.093 8 C -0.102 4.102 9 C -0.109 4.109 10 C 0.250 3.750 11 O -0.525 6.525 12 N -0.182 5.182 13 C -0.468 4.468 14 H 0.104 0.896 15 C -0.210 4.210 16 N -0.548 5.548 17 Si 0.823 3.177 18 H -0.194 1.194 19 H -0.190 1.190 20 H -0.194 1.194 21 C -0.121 4.121 22 C -0.102 4.102 23 N -0.165 5.165 24 H 0.112 0.888 25 H 0.151 0.849 26 H 0.107 0.893 27 H 0.290 0.710 28 H 0.171 0.829 29 H 0.151 0.849 30 H 0.234 0.766 31 H 0.094 0.906 32 H 0.151 0.849 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.888 14.812 -0.064 24.003 hybrid contribution 0.163 -0.785 0.021 0.802 sum -18.725 14.026 -0.043 23.396 Atomic orbital electron populations 1.22410 0.70585 1.06831 1.05400 1.50733 1.09674 1.03418 1.53697 1.27016 0.84380 0.97176 0.94320 1.70446 1.22995 1.10061 1.25993 1.22150 0.91431 0.89554 0.99727 1.17728 0.89237 0.91603 1.03352 1.21149 0.89675 1.01014 0.97441 1.21171 0.99554 0.91676 0.97785 1.20234 0.92873 0.94925 1.02861 1.18420 0.89164 0.82705 0.84707 1.90547 1.29694 1.73293 1.59015 1.41910 1.09693 1.04723 1.61914 1.19805 0.87943 0.88993 1.50044 0.89610 1.26229 1.01854 0.97570 0.95386 1.69639 1.24561 1.12648 1.47919 0.84876 0.76817 0.76761 0.79235 1.19382 1.19044 1.19391 1.21305 0.91012 1.00529 0.99303 1.21105 0.98858 0.92011 0.98197 1.78179 1.01348 1.09793 1.27137 0.88768 0.84855 0.89329 0.71021 0.82870 0.84914 0.76571 0.90647 0.84899 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 11.52 127.77 1.47 1.92 16 2 N -0.38 -6.36 4.04 -373.64 -1.51 -7.87 16 3 C 0.27 3.97 12.64 180.37 2.28 6.25 16 4 N -0.57 -14.24 10.81 -193.13 -2.09 -16.32 16 5 C 0.25 7.34 7.77 137.39 1.07 8.41 16 6 C -0.02 -0.51 5.88 -19.99 -0.12 -0.63 16 7 C -0.07 -2.34 9.67 22.44 0.22 -2.13 16 8 C -0.08 -3.12 9.58 22.50 0.22 -2.90 16 9 C -0.10 -4.49 5.88 -20.06 -0.12 -4.61 16 10 C 0.46 24.45 7.71 86.71 0.67 25.11 16 11 O -0.64 -38.00 15.91 -4.06 -0.06 -38.06 16 12 N -0.55 -29.93 5.23 -309.85 -1.62 -31.55 16 13 C -0.34 -19.70 9.68 84.11 0.81 -18.89 16 14 H 0.09 5.26 7.15 -2.91 -0.02 5.24 16 15 C -0.01 -0.47 5.50 84.96 0.47 0.00 16 16 N -0.91 -48.95 13.05 21.68 0.28 -48.67 16 17 Si 1.00 42.65 29.55 68.60 2.03 44.68 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 C -0.10 -3.78 9.53 22.50 0.21 -3.57 16 22 C -0.08 -2.64 9.66 22.44 0.22 -2.43 16 23 N -0.33 -8.95 12.32 -52.40 -0.65 -9.60 16 24 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 25 H 0.13 -0.37 8.14 -2.38 -0.02 -0.39 16 26 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 27 H 0.27 0.51 8.06 -2.91 -0.02 0.49 16 28 H 0.15 4.30 7.82 -2.91 -0.02 4.28 16 29 H 0.13 5.08 7.64 -2.91 -0.02 5.06 16 30 H 0.40 20.49 5.91 -92.70 -0.55 19.94 16 31 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.13 4.83 6.39 -2.91 -0.02 4.81 16 33 H 0.15 4.19 7.82 -2.91 -0.02 4.17 16 Total: -1.00 -78.53 300.75 4.40 -74.13 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.61 Total: 26.72 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 7.40 Total: 6.55 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -5.58 Total: -114.01 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.06 Total: -38.06 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -78.53 4.40 -74.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184209707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.811 kcal (2) G-P(sol) polarization free energy of solvation -78.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds