Wall clock time and date at job start Mon Mar 30 2020 01:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31137 * 127.11512 * 2 1 4 4 N 1.28515 * 109.06489 * 180.30031 * 3 2 1 5 5 H 0.96994 * 124.44240 * 179.74225 * 4 3 2 6 6 N 1.28596 * 111.11937 * 359.71325 * 4 3 2 7 7 C 1.32454 * 108.51856 * 0.02562 * 6 4 3 8 8 C 1.47764 * 127.23553 * 180.02562 * 7 6 4 9 9 O 1.21565 * 119.99471 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00134 * 0.02562 * 8 7 6 11 11 C 1.39135 * 120.00340 * 174.43026 * 10 8 7 12 12 C 1.39502 * 119.83697 * 145.27500 * 11 10 8 13 13 C 1.36371 * 120.16418 * 180.26136 * 12 11 10 14 14 C 1.40874 * 119.83034 * 359.49289 * 13 12 11 15 15 C 1.41141 * 120.16316 * 180.25728 * 14 13 12 16 16 H 1.07996 * 119.99594 * 34.64084 * 15 14 13 17 17 C 1.39911 * 119.99952 * 214.64194 * 15 14 13 18 18 N 1.30872 * 120.00219 * 5.43169 * 17 15 14 19 19 Si 1.86795 * 119.99796 * 185.42410 * 17 15 14 20 20 H 1.48504 * 109.47041 * 60.00737 * 19 17 15 21 21 H 1.48506 * 109.46955 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47480 * 300.00483 * 19 17 15 23 23 C 1.40887 * 119.67704 * 0.48234 * 14 13 12 24 24 C 1.36354 * 119.82877 * 359.77533 * 23 14 13 25 25 H 1.09000 * 109.46965 * 270.15753 * 1 2 3 26 26 H 1.09004 * 109.46728 * 30.15852 * 1 2 3 27 27 H 1.08992 * 109.46910 * 150.15609 * 1 2 3 28 28 H 0.97003 * 119.99770 * 354.43175 * 10 8 7 29 29 H 1.07998 * 119.91898 * 359.97438 * 12 11 10 30 30 H 1.07998 * 120.08042 * 179.74517 * 13 12 11 31 31 H 0.96992 * 120.00272 * 179.97438 * 18 17 15 32 32 H 1.08001 * 120.08121 * 179.75140 * 23 14 13 33 33 H 1.07999 * 119.92023 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2983 1.0457 0.0000 4 7 3.5202 0.6475 -0.0064 5 1 4.2896 1.2381 -0.0113 6 7 3.5891 -0.6366 -0.0047 7 6 2.3575 -1.1239 0.0026 8 6 1.9590 -2.5468 0.0074 9 8 0.7812 -2.8480 0.0136 10 7 2.9011 -3.5105 0.0050 11 6 2.5305 -4.8461 0.1265 12 6 3.2504 -5.8305 -0.5508 13 6 2.8897 -7.1410 -0.4407 14 6 1.7937 -7.5007 0.3680 15 6 1.4177 -8.8555 0.4913 16 1 2.1723 -9.6280 0.4840 17 6 0.0675 -9.1975 0.6229 18 7 -0.8542 -8.2735 0.5253 19 14 -0.4198 -10.9731 0.9378 20 1 0.1932 -11.4367 2.2086 21 1 -1.8983 -11.0706 1.0365 22 1 0.0583 -11.8236 -0.1816 23 6 1.0718 -6.5009 1.0494 24 6 1.4410 -5.1941 0.9255 25 1 -0.3633 0.0028 1.0277 26 1 -0.3633 0.8886 -0.5163 27 1 -0.3633 -0.8913 -0.5114 28 1 3.8376 -3.2730 -0.0814 29 1 4.0926 -5.5536 -1.1675 30 1 3.4455 -7.9016 -0.9689 31 1 -1.7903 -8.5107 0.6162 32 1 0.2280 -6.7689 1.6679 33 1 0.8884 -4.4265 1.4468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188458707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:10 Heat of formation + Delta-G solvation = 64.536925 kcal Electronic energy + Delta-G solvation = -19575.903341 eV Core-core repulsion = 16409.884806 eV Total energy + Delta-G solvation = -3166.018535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.84019 -41.12175 -39.03095 -36.25657 -34.85386 -34.56803 -33.69569 -31.44941 -30.84413 -29.35684 -27.28969 -25.50205 -23.29462 -22.86774 -22.32927 -21.16375 -19.78428 -19.19811 -18.63199 -17.80228 -17.72152 -17.01783 -16.00825 -15.70573 -15.59030 -15.05393 -14.82409 -14.47258 -14.00844 -13.97267 -13.85037 -13.65298 -13.35150 -12.79926 -12.70193 -12.60674 -12.30869 -12.20984 -11.75735 -11.70538 -11.49450 -11.26925 -10.96882 -10.59775 -10.51692 -9.45529 -8.76481 -8.51577 -6.29190 0.06990 0.71124 0.95651 1.14491 1.41779 1.50849 1.53943 1.58951 2.15637 2.18391 2.26580 2.81883 2.83838 3.58361 3.71292 3.92049 4.29448 4.43476 4.46260 4.56625 4.75614 4.91524 4.95683 5.11800 5.15076 5.28555 5.33244 5.41174 5.69608 5.84217 5.93802 6.03884 6.13208 6.34615 6.55925 6.69887 6.90119 6.97303 7.00102 7.23636 8.44961 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.040612 B = 0.003843 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.288545 B = 7284.431762 C = 7864.337039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.058 3.942 3 N -0.286 5.286 4 N -0.207 5.207 5 H 0.491 0.509 6 N -0.238 5.238 7 C -0.057 4.057 8 C 0.592 3.408 9 O -0.544 6.544 10 N -0.628 5.628 11 C 0.016 3.984 12 C -0.102 4.102 13 C -0.211 4.211 14 C 0.075 3.925 15 C -0.500 4.500 16 H 0.081 0.919 17 C 0.028 3.972 18 N -0.842 5.842 19 Si 0.987 3.013 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.259 1.259 23 C -0.162 4.162 24 C -0.100 4.100 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.418 0.582 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.284 0.716 32 H 0.098 0.902 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.004 14.517 -0.813 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 N -0.130 5.130 4 N -0.046 5.046 5 H 0.348 0.652 6 N -0.089 5.089 7 C -0.219 4.219 8 C 0.377 3.623 9 O -0.419 6.419 10 N -0.273 5.273 11 C -0.077 4.077 12 C -0.122 4.122 13 C -0.231 4.231 14 C 0.073 3.927 15 C -0.531 4.531 16 H 0.099 0.901 17 C -0.185 4.185 18 N -0.470 5.470 19 Si 0.808 3.192 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.183 1.183 23 C -0.182 4.182 24 C -0.120 4.120 25 H 0.108 0.892 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.256 0.744 29 H 0.151 0.849 30 H 0.131 0.869 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.901 15.107 -0.795 16.628 hybrid contribution -0.236 -0.820 0.114 0.861 sum 6.665 14.286 -0.681 15.779 Atomic orbital electron populations 1.20298 0.83517 1.04613 1.04469 1.23569 0.99656 0.86463 1.00831 1.73958 0.91513 1.26702 1.20801 1.45887 1.07314 1.02927 1.48492 0.65196 1.74316 1.22889 0.95770 1.15954 1.22663 0.90064 0.95732 1.13449 1.16945 0.85366 0.82852 0.77125 1.90815 1.18306 1.82221 1.50600 1.42673 1.10247 1.03769 1.70570 1.17257 1.01904 0.82657 1.05919 1.20428 1.00509 0.92202 0.99032 1.20938 1.02615 0.95551 1.03988 1.18021 0.91283 0.94100 0.89286 1.19758 0.93384 0.93188 1.46722 0.90122 1.26781 0.96032 1.03979 0.91688 1.69891 1.02363 1.36956 1.37760 0.85180 0.77558 0.76559 0.79920 1.18322 1.19747 1.18342 1.20900 1.02186 0.92263 1.02876 1.20480 0.97154 0.95765 0.98619 0.89177 0.88305 0.90206 0.74434 0.84855 0.86903 0.90543 0.88444 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 10.00 71.24 0.71 -0.89 16 2 C 0.06 1.51 7.39 43.33 0.32 1.83 16 3 N -0.29 -6.18 12.28 -46.57 -0.57 -6.75 16 4 N -0.21 -3.57 7.76 37.02 0.29 -3.28 16 5 H 0.49 3.63 8.96 -347.20 -3.11 0.52 16 6 N -0.24 -5.51 12.12 -48.17 -0.58 -6.10 16 7 C -0.06 -1.65 7.21 42.23 0.30 -1.35 16 8 C 0.59 21.53 7.54 86.76 0.65 22.18 16 9 O -0.54 -23.64 12.96 -3.92 -0.05 -23.69 16 10 N -0.63 -22.22 5.30 -305.77 -1.62 -23.84 16 11 C 0.02 0.69 6.26 38.60 0.24 0.93 16 12 C -0.10 -4.27 9.90 22.14 0.22 -4.05 16 13 C -0.21 -10.05 9.74 22.48 0.22 -9.83 16 14 C 0.08 4.11 5.50 -21.27 -0.12 4.00 16 15 C -0.50 -27.13 9.03 23.39 0.21 -26.92 16 16 H 0.08 4.13 7.85 -2.91 -0.02 4.10 16 17 C 0.03 1.43 5.31 85.24 0.45 1.89 16 18 N -0.84 -46.30 10.96 21.82 0.24 -46.06 16 19 Si 0.99 39.22 29.56 68.60 2.03 41.25 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 23 C -0.16 -8.94 8.57 22.48 0.19 -8.75 16 24 C -0.10 -5.02 8.57 22.14 0.19 -4.83 16 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 2.17 6.77 -2.39 -0.02 2.15 16 28 H 0.42 11.85 8.59 -92.71 -0.80 11.05 16 29 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 30 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 31 H 0.28 14.33 8.30 -92.71 -0.77 13.56 16 32 H 0.10 5.70 6.46 -2.91 -0.02 5.69 16 33 H 0.10 4.90 6.50 -2.91 -0.02 4.89 16 Total: -1.00 -68.15 293.10 0.61 -67.54 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -2.72 Total: 26.73 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 3.60 Total: -25.79 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -2.25 Total: -86.03 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -68.15 0.61 -67.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188458707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.077 kcal (2) G-P(sol) polarization free energy of solvation -68.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds