Wall clock time and date at job start Mon Mar 30 2020 01:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36569 * 127.11502 * 2 1 4 4 N 1.30368 * 107.30755 * 180.23871 * 3 2 1 5 5 N 1.28530 * 110.03042 * 359.76459 * 4 3 2 6 6 C 1.31172 * 109.83190 * 359.97438 * 5 4 3 7 7 N 1.38890 * 126.46170 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00379 * 0.03114 * 7 6 5 9 9 O 1.21553 * 119.99614 * 359.97438 * 8 7 6 10 10 C 1.47837 * 120.00226 * 180.27411 * 8 7 6 11 11 C 1.39943 * 120.02475 * 359.44673 * 10 8 7 12 12 C 1.38323 * 120.35492 * 179.74155 * 11 10 8 13 13 C 1.37759 * 120.41160 * 0.55854 * 12 11 10 14 14 C 1.40751 * 120.04333 * 359.70035 * 13 12 11 15 15 C 1.41447 * 120.17445 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00031 * 150.17521 * 15 14 13 17 17 C 1.39931 * 119.99679 * 330.17208 * 15 14 13 18 18 N 1.30834 * 119.99732 * 161.73087 * 17 15 14 19 19 Si 1.86797 * 120.00533 * 341.73312 * 17 15 14 20 20 H 1.48496 * 109.47306 * 95.41354 * 19 17 15 21 21 H 1.48500 * 109.47397 * 215.41360 * 19 17 15 22 22 H 1.48504 * 109.46950 * 335.41192 * 19 17 15 23 23 C 1.39012 * 120.02785 * 179.72517 * 10 8 7 24 24 H 1.08995 * 109.47396 * 270.15544 * 1 2 3 25 25 H 1.08999 * 109.47841 * 30.16616 * 1 2 3 26 26 H 1.09007 * 109.46657 * 150.16401 * 1 2 3 27 27 H 1.07991 * 126.34872 * 359.97008 * 3 2 1 28 28 H 0.97002 * 119.99716 * 180.02562 * 7 6 5 29 29 H 1.07996 * 119.82172 * 0.02562 * 11 10 8 30 30 H 1.07993 * 119.79370 * 180.25667 * 12 11 10 31 31 H 1.08003 * 119.97486 * 179.71684 * 13 12 11 32 32 H 0.97003 * 119.99616 * 179.97438 * 18 17 15 33 33 H 1.07999 * 120.20343 * 359.95106 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2891 1.0890 0.0000 4 7 3.5157 0.6473 -0.0052 5 7 3.5207 -0.6380 -0.0035 6 6 2.2885 -1.0878 0.0035 7 7 1.8962 -2.4202 0.0068 8 6 2.8255 -3.3964 0.0034 9 8 4.0070 -3.1107 -0.0030 10 6 2.4079 -4.8145 0.0008 11 6 1.0478 -5.1440 0.0136 12 6 0.6494 -6.4686 0.0059 13 6 1.5862 -7.4786 -0.0028 14 6 2.9587 -7.1666 -0.0104 15 6 3.9230 -8.2014 -0.0199 16 1 4.8818 -8.0417 -0.4905 17 6 3.6345 -9.4320 0.5805 18 7 4.3435 -10.4893 0.2786 19 14 2.2373 -9.5653 1.8131 20 1 1.0079 -10.0270 1.1198 21 1 2.6032 -10.5391 2.8728 22 1 1.9899 -8.2357 2.4266 23 6 3.3659 -5.8218 -0.0084 24 1 -0.3634 0.0028 1.0276 25 1 -0.3635 0.8884 -0.5164 26 1 -0.3633 -0.8915 -0.5113 27 1 1.9817 2.1243 -0.0005 28 1 0.9534 -2.6481 0.0117 29 1 0.3053 -4.3599 0.0249 30 1 -0.4026 -6.7125 0.0117 31 1 1.2673 -8.5104 -0.0042 32 1 4.1438 -11.3423 0.6951 33 1 4.4166 -5.5722 -0.0146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188811993.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:35 Heat of formation + Delta-G solvation = 81.912095 kcal Electronic energy + Delta-G solvation = -19644.846153 eV Core-core repulsion = 16479.581062 eV Total energy + Delta-G solvation = -3165.265091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.97667 -39.64510 -37.46990 -35.46231 -34.43197 -33.76490 -31.00553 -30.22745 -29.29494 -27.84051 -25.41558 -24.07888 -22.61059 -21.62236 -20.79711 -19.89993 -18.49042 -17.67180 -16.60979 -16.47545 -16.21342 -15.69674 -14.81053 -14.77598 -14.55666 -14.15889 -13.76104 -13.62935 -13.27816 -12.90567 -12.84094 -12.15896 -11.77984 -11.48461 -11.15182 -11.08212 -10.85975 -10.63604 -10.28789 -10.26788 -10.10812 -9.83739 -9.59047 -9.28607 -8.43559 -7.99738 -7.88059 -7.08898 -4.64434 1.49829 1.91367 1.97510 2.40640 2.95150 2.99578 3.09261 3.12254 3.19753 3.55032 3.85771 4.20671 4.37557 4.49149 4.65820 4.86928 4.93919 5.18690 5.22165 5.50604 5.65684 5.72031 5.86634 6.25388 6.29114 6.52742 6.55408 6.81981 6.87810 7.05435 7.23438 7.34309 7.38833 7.65527 7.82678 8.19506 8.37193 8.42594 8.61547 8.86377 9.92830 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038400 B = 0.004154 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.993810 B = 6738.358128 C = 7249.605745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.504 5.504 3 C 0.140 3.860 4 N -0.284 5.284 5 N -0.277 5.277 6 C 0.413 3.587 7 N -0.638 5.638 8 C 0.563 3.437 9 O -0.475 6.475 10 C -0.103 4.103 11 C -0.223 4.223 12 C -0.079 4.079 13 C -0.221 4.221 14 C 0.082 3.918 15 C -0.438 4.438 16 H 0.096 0.904 17 C 0.083 3.917 18 N -0.798 5.798 19 Si 0.912 3.088 20 H -0.269 1.269 21 H -0.288 1.288 22 H -0.243 1.243 23 C -0.129 4.129 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.221 0.779 28 H 0.415 0.585 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.288 0.712 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.659 14.451 0.814 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.204 5.204 3 C -0.148 4.148 4 N -0.122 5.122 5 N -0.123 5.123 6 C 0.058 3.942 7 N -0.293 5.293 8 C 0.353 3.647 9 O -0.344 6.344 10 C -0.106 4.106 11 C -0.243 4.243 12 C -0.097 4.097 13 C -0.241 4.241 14 C 0.079 3.921 15 C -0.465 4.465 16 H 0.114 0.886 17 C -0.137 4.137 18 N -0.421 5.421 19 Si 0.738 3.262 20 H -0.195 1.195 21 H -0.215 1.215 22 H -0.166 1.166 23 C -0.149 4.149 24 H 0.100 0.900 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.238 0.762 28 H 0.253 0.747 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.109 14.276 0.800 18.107 hybrid contribution -2.816 -0.276 0.499 2.874 sum -13.926 13.999 1.299 19.789 Atomic orbital electron populations 1.22069 0.75565 1.05208 1.04123 1.46363 1.08615 1.06006 1.59406 1.26286 0.86929 0.93798 1.07758 1.74183 1.18083 1.03308 1.16654 1.75090 1.13025 1.01858 1.22306 1.21465 0.87288 0.83013 1.02441 1.42807 1.11897 0.99611 1.74985 1.19003 0.84947 0.85252 0.75509 1.90873 1.16350 1.82825 1.44303 1.19168 0.94780 0.89071 1.07611 1.20298 0.92912 0.95654 1.15462 1.20484 0.97749 0.92655 0.98808 1.21194 0.93452 0.97787 1.11645 1.17682 0.92186 0.92161 0.90048 1.19571 1.02172 0.94167 1.30633 0.88614 1.26198 0.96744 0.94373 0.96427 1.69691 1.36823 1.00561 1.35052 0.86294 0.80074 0.79932 0.79936 1.19474 1.21513 1.16631 1.21305 0.98091 0.91310 1.04243 0.89969 0.88590 0.89576 0.76235 0.74654 0.88899 0.88109 0.87722 0.90150 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 11.10 59.85 0.66 1.02 16 2 N -0.50 -5.38 3.20 -126.09 -0.40 -5.79 16 3 C 0.14 1.55 12.79 -89.07 -1.14 0.41 16 4 N -0.28 -4.75 12.18 29.87 0.36 -4.38 16 5 N -0.28 -5.43 10.45 30.37 0.32 -5.11 16 6 C 0.41 6.53 8.54 -318.50 -2.72 3.81 16 7 N -0.64 -9.73 5.35 -13.28 -0.07 -9.80 16 8 C 0.56 11.15 7.73 -12.33 -0.10 11.05 16 9 O -0.47 -11.23 15.06 5.32 0.08 -11.15 16 10 C -0.10 -2.10 5.87 -105.04 -0.62 -2.72 16 11 C -0.22 -3.98 9.55 -38.91 -0.37 -4.35 16 12 C -0.08 -1.49 10.01 -39.73 -0.40 -1.89 16 13 C -0.22 -4.91 7.17 -38.81 -0.28 -5.18 16 14 C 0.08 2.00 5.10 -106.87 -0.55 1.45 16 15 C -0.44 -11.44 9.57 -37.73 -0.36 -11.80 16 16 H 0.10 2.64 8.06 -52.49 -0.42 2.22 16 17 C 0.08 2.08 5.40 -17.34 -0.09 1.99 16 18 N -0.80 -20.52 13.93 55.55 0.77 -19.75 16 19 Si 0.91 19.64 24.52 -169.99 -4.17 15.48 16 20 H -0.27 -5.52 6.71 56.52 0.38 -5.14 16 21 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.24 -5.35 6.86 56.52 0.39 -4.97 16 23 C -0.13 -3.01 9.34 -38.44 -0.36 -3.37 16 24 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 0.34 7.66 -51.93 -0.40 -0.05 16 27 H 0.22 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.41 4.66 6.17 -40.82 -0.25 4.41 16 29 H 0.09 1.24 6.38 -52.49 -0.33 0.91 16 30 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.11 2.30 4.72 -52.48 -0.25 2.05 16 32 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 33 H 0.12 2.85 7.64 -52.49 -0.40 2.45 16 LS Contribution 288.85 15.07 4.35 4.35 Total: -1.00 -33.57 288.85 -7.99 -41.55 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -2.92 Total: 4.18 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -6.31 Total: -9.58 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.98 Total: -44.83 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.17 Total: 15.48 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.57 -7.99 -41.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188811993.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.465 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds