Wall clock time and date at job start Mon Mar 30 2020 01:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36569 * 127.11502 * 2 1 4 4 N 1.30368 * 107.30755 * 180.23871 * 3 2 1 5 5 N 1.28530 * 110.03042 * 359.76459 * 4 3 2 6 6 C 1.31172 * 109.83190 * 359.97438 * 5 4 3 7 7 N 1.38890 * 126.46170 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00379 * 0.03114 * 7 6 5 9 9 O 1.21553 * 119.99614 * 359.97438 * 8 7 6 10 10 C 1.47837 * 120.00226 * 180.27411 * 8 7 6 11 11 C 1.39943 * 120.02475 * 359.44673 * 10 8 7 12 12 C 1.38323 * 120.35492 * 179.74155 * 11 10 8 13 13 C 1.37759 * 120.41160 * 0.55854 * 12 11 10 14 14 C 1.40751 * 120.04333 * 359.70035 * 13 12 11 15 15 C 1.41447 * 120.17445 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00031 * 150.17521 * 15 14 13 17 17 C 1.39931 * 119.99679 * 330.17208 * 15 14 13 18 18 N 1.30834 * 119.99732 * 161.73087 * 17 15 14 19 19 Si 1.86797 * 120.00533 * 341.73312 * 17 15 14 20 20 H 1.48496 * 109.47306 * 95.41354 * 19 17 15 21 21 H 1.48500 * 109.47397 * 215.41360 * 19 17 15 22 22 H 1.48504 * 109.46950 * 335.41192 * 19 17 15 23 23 C 1.39012 * 120.02785 * 179.72517 * 10 8 7 24 24 H 1.08995 * 109.47396 * 270.15544 * 1 2 3 25 25 H 1.08999 * 109.47841 * 30.16616 * 1 2 3 26 26 H 1.09007 * 109.46657 * 150.16401 * 1 2 3 27 27 H 1.07991 * 126.34872 * 359.97008 * 3 2 1 28 28 H 0.97002 * 119.99716 * 180.02562 * 7 6 5 29 29 H 1.07996 * 119.82172 * 0.02562 * 11 10 8 30 30 H 1.07993 * 119.79370 * 180.25667 * 12 11 10 31 31 H 1.08003 * 119.97486 * 179.71684 * 13 12 11 32 32 H 0.97003 * 119.99616 * 179.97438 * 18 17 15 33 33 H 1.07999 * 120.20343 * 359.95106 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2891 1.0890 0.0000 4 7 3.5157 0.6473 -0.0052 5 7 3.5207 -0.6380 -0.0035 6 6 2.2885 -1.0878 0.0035 7 7 1.8962 -2.4202 0.0068 8 6 2.8255 -3.3964 0.0034 9 8 4.0070 -3.1107 -0.0030 10 6 2.4079 -4.8145 0.0008 11 6 1.0478 -5.1440 0.0136 12 6 0.6494 -6.4686 0.0059 13 6 1.5862 -7.4786 -0.0028 14 6 2.9587 -7.1666 -0.0104 15 6 3.9230 -8.2014 -0.0199 16 1 4.8818 -8.0417 -0.4905 17 6 3.6345 -9.4320 0.5805 18 7 4.3435 -10.4893 0.2786 19 14 2.2373 -9.5653 1.8131 20 1 1.0079 -10.0270 1.1198 21 1 2.6032 -10.5391 2.8728 22 1 1.9899 -8.2357 2.4266 23 6 3.3659 -5.8218 -0.0084 24 1 -0.3634 0.0028 1.0276 25 1 -0.3635 0.8884 -0.5164 26 1 -0.3633 -0.8915 -0.5113 27 1 1.9817 2.1243 -0.0005 28 1 0.9534 -2.6481 0.0117 29 1 0.3053 -4.3599 0.0249 30 1 -0.4026 -6.7125 0.0117 31 1 1.2673 -8.5104 -0.0042 32 1 4.1438 -11.3423 0.6951 33 1 4.4166 -5.5722 -0.0146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188811993.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:34 Heat of formation + Delta-G solvation = 60.443523 kcal Electronic energy + Delta-G solvation = -19645.777100 eV Core-core repulsion = 16479.581062 eV Total energy + Delta-G solvation = -3166.196038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.01654 -41.18508 -39.14787 -36.62202 -35.64735 -35.45881 -32.68228 -31.87658 -30.53349 -28.43612 -27.19674 -25.58395 -23.68470 -22.94045 -22.41894 -21.33567 -19.86619 -19.02403 -18.06813 -17.59681 -17.37780 -17.15429 -16.50423 -15.93722 -15.77995 -15.73891 -15.41517 -14.59313 -14.54151 -14.27469 -13.87718 -13.60443 -13.41269 -12.88207 -12.73723 -12.57442 -12.40018 -12.27537 -11.77619 -11.62625 -11.38828 -11.20259 -11.08788 -10.96629 -9.78976 -9.64940 -9.50515 -8.92184 -6.57339 -0.01419 0.72245 0.82673 0.89255 1.25967 1.43035 1.49661 1.75362 2.06643 2.12200 2.13721 2.62448 3.39387 3.43602 3.74080 3.90624 4.17512 4.26925 4.35303 4.39982 4.42774 4.58500 4.69975 4.82055 4.84260 4.89490 5.10912 5.24934 5.38028 5.58178 5.66233 5.82725 5.96413 5.99996 6.20027 6.30076 6.62855 6.71645 6.93439 7.80050 8.16999 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038400 B = 0.004154 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.993810 B = 6738.358128 C = 7249.605745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.487 5.487 3 C 0.177 3.823 4 N -0.345 5.345 5 N -0.343 5.343 6 C 0.391 3.609 7 N -0.613 5.613 8 C 0.566 3.434 9 O -0.526 6.526 10 C -0.106 4.106 11 C -0.179 4.179 12 C -0.077 4.077 13 C -0.221 4.221 14 C 0.067 3.933 15 C -0.490 4.490 16 H 0.048 0.952 17 C 0.044 3.956 18 N -0.849 5.849 19 Si 0.969 3.031 20 H -0.242 1.242 21 H -0.279 1.279 22 H -0.249 1.249 23 C -0.164 4.164 24 H 0.101 0.899 25 H 0.130 0.870 26 H 0.099 0.901 27 H 0.279 0.721 28 H 0.436 0.564 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.109 0.891 32 H 0.296 0.704 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.873 17.302 1.478 26.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.186 5.186 3 C -0.112 4.112 4 N -0.183 5.183 5 N -0.189 5.189 6 C 0.034 3.966 7 N -0.270 5.270 8 C 0.355 3.645 9 O -0.398 6.398 10 C -0.109 4.109 11 C -0.198 4.198 12 C -0.095 4.095 13 C -0.240 4.240 14 C 0.065 3.935 15 C -0.519 4.519 16 H 0.066 0.934 17 C -0.171 4.171 18 N -0.475 5.475 19 Si 0.791 3.209 20 H -0.166 1.166 21 H -0.206 1.206 22 H -0.172 1.172 23 C -0.184 4.184 24 H 0.120 0.880 25 H 0.149 0.851 26 H 0.118 0.882 27 H 0.294 0.706 28 H 0.279 0.721 29 H 0.174 0.826 30 H 0.173 0.827 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.407 17.161 1.449 24.487 hybrid contribution -1.087 -0.738 0.220 1.332 sum -18.494 16.423 1.669 24.790 Atomic orbital electron populations 1.22647 0.71529 1.07712 1.06210 1.46633 1.10615 1.03911 1.57404 1.27423 0.85462 0.95742 1.02569 1.74068 1.21487 1.02485 1.20252 1.74918 1.16269 1.03672 1.24005 1.21312 0.87745 0.83795 1.03757 1.42190 1.11977 0.99046 1.73771 1.18852 0.84820 0.85765 0.75067 1.90865 1.18743 1.83536 1.46658 1.19341 0.95720 0.88918 1.06950 1.21020 0.92412 0.97258 1.09159 1.21072 0.99749 0.91903 0.96747 1.21450 0.92723 0.99341 1.10515 1.17736 0.93294 0.91732 0.90754 1.19491 1.01572 0.96550 1.34278 0.93411 1.26964 0.99275 0.93409 0.97433 1.69734 1.39336 1.01302 1.37126 0.85445 0.78054 0.79638 0.77803 1.16627 1.20603 1.17227 1.21196 0.97725 0.92349 1.07176 0.88026 0.85129 0.88232 0.70603 0.72143 0.82609 0.82730 0.87318 0.89380 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.19 11.10 127.77 1.42 1.61 16 2 N -0.49 -8.30 3.20 -552.84 -1.77 -10.07 16 3 C 0.18 3.24 12.79 179.81 2.30 5.54 16 4 N -0.35 -11.27 12.18 -59.41 -0.72 -11.99 16 5 N -0.34 -13.56 10.45 -57.84 -0.60 -14.16 16 6 C 0.39 11.56 8.54 259.98 2.22 13.78 16 7 N -0.61 -16.91 5.35 -314.22 -1.68 -18.60 16 8 C 0.57 22.10 7.73 86.78 0.67 22.78 16 9 O -0.53 -26.11 15.06 -3.88 -0.06 -26.16 16 10 C -0.11 -4.19 5.87 -20.14 -0.12 -4.31 16 11 C -0.18 -5.38 9.55 22.70 0.22 -5.16 16 12 C -0.08 -2.48 10.01 22.18 0.22 -2.26 16 13 C -0.22 -9.33 7.17 22.77 0.16 -9.17 16 14 C 0.07 3.40 5.10 -21.32 -0.11 3.29 16 15 C -0.49 -27.95 9.57 23.47 0.22 -27.72 16 16 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 17 C 0.04 2.32 5.40 85.25 0.46 2.78 16 18 N -0.85 -46.65 13.93 21.82 0.30 -46.34 16 19 Si 0.97 40.44 24.52 68.60 1.68 42.12 16 20 H -0.24 -8.97 6.71 99.48 0.67 -8.31 16 21 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.25 -10.45 6.86 99.48 0.68 -9.77 16 23 C -0.16 -8.05 9.34 23.01 0.21 -7.83 16 24 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.13 -0.38 8.14 -2.39 -0.02 -0.40 16 26 H 0.10 0.12 7.66 -2.38 -0.02 0.10 16 27 H 0.28 1.34 8.06 -2.92 -0.02 1.31 16 28 H 0.44 7.35 6.17 -92.71 -0.57 6.78 16 29 H 0.16 2.78 6.38 -2.91 -0.02 2.76 16 30 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.11 4.50 4.72 -2.91 -0.01 4.49 16 32 H 0.30 14.43 8.30 -92.71 -0.77 13.66 16 33 H 0.09 4.73 7.64 -2.91 -0.02 4.70 16 Total: -1.00 -86.03 288.85 5.57 -80.47 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.53 Total: 11.42 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 7.88 Total: -6.67 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -4.48 Total: -101.16 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.06 Total: -26.16 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.68 Total: 42.12 kcal Total: -86.03 5.57 -80.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188811993.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.911 kcal (2) G-P(sol) polarization free energy of solvation -86.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds